mRNA_H-elongata_contig77868.15459.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: A0A6H5L1F1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F1_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 4.330e-13 Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 46 LREHTARTAELTRQRDQTGLYQHIKSLE-LEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPE------HAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
L + AR + RD GLY+H+KSL L+G++ +K+ +G++LR K +L RW +F LLNA+SPTL+ SI+++++Q P+ + + P+LEE + A + N KA G D++ E+L
Sbjct: 8 LERYVARMESILDDRDMRGLYKHLKSLVGLDGRQTGGQQPVKDENGVMLRSKGGVLRRWARFFGTLLNAESPTLNPSIIEEVKQRPKVPTNDGSQHVGSAPTLEETQRAARGMKNWKAPGHDSLPLEIL 136
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E) HSP 1 Score: 61.6 bits (148), Expect = 2.160e-8 Identity = 39/86 (45.35%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 154 STYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
S IK+ +G LL K +L RW E F LLN D L + +LP+ L PSL+EV EA+ N KAVGVDN+ GELL
Sbjct: 452 SVPIKSTNGTLLVSKEDVLNRWSEHFNNLLNVDR-LADFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELL 536
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5F87EB (uncharacterized protein LOC124805420 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F87EB) HSP 1 Score: 57.0 bits (136), Expect = 5.570e-7 Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
R K+ + N+ + AE R D G ++ I + G +I + G LL ++ I RWKE+F ELLNA PT+ S DD E L P EPSL E+KE++ KL KA G D +
Sbjct: 104 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5F24CA (uncharacterized protein LOC124777988 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F24CA) HSP 1 Score: 57.0 bits (136), Expect = 6.500e-7 Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
R K+ + N+ + AE R D G ++ I + G +I + G LL ++ I RWKE+F ELLNA PT+ S DD E L P EPSL E+KE++ KL KA G D +
Sbjct: 104 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: A0A3B3HUN9_ORYLA (Reverse transcriptase domain-containing protein n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3B3HUN9_ORYLA) HSP 1 Score: 57.4 bits (137), Expect = 6.680e-7 Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 151 KSTY-IKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
K+T+ +++ SG LL PSI RW E F ELLN + T+DAS++DDIEQLP L + EE+ A+ GK+ G D V E+L
Sbjct: 196 KTTHPVRSKSGALLTSTPSIKGRWVEHFSELLNQPT-TVDASLIDDIEQLPTDVSLDLPITEEELDIALKNTKLGKSPGPDGVLPEVL 282
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5FE6C3 (uncharacterized protein LOC124795698 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5FE6C3) HSP 1 Score: 57.0 bits (136), Expect = 7.610e-7 Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
R K+ + N+ + AE R D G ++ I + G +I + G LL ++ I RWKE+F ELLNA PT+ S DD E L P EPSL E+KE++ KL KA G D +
Sbjct: 153 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 271
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: A0A8M1KV33_CLUHA (zinc finger protein 883-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KV33_CLUHA) HSP 1 Score: 57.0 bits (136), Expect = 8.430e-7 Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 91 DQTGLYQHIKSLELEGKRGCKSTYIKNASGM-LLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
D Y +KS++ G T +K A G+ +L+D+ S+L RW E F LLN S D +ILD + +LP L P+ EV AV L N K+ G+DN+ ELL
Sbjct: 21 DMHNFYNAVKSID--GPTNHCITPLKTADGLRVLKDQSSVLERWAEHFNTLLNRDSEA-DHTILDQLPELPPIDILNQPPTFLEVLSAVRSLKNNKSPGMDNIPAELL 125
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5F0EE2 (uncharacterized protein LOC124719631 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F0EE2) HSP 1 Score: 57.0 bits (136), Expect = 9.270e-7 Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
R K+ + N+ + AE R D G ++ I + G +I + G LL ++ I RWKE+F ELLNA PT+ S DD E L P EPSL E+KE++ KL KA G D +
Sbjct: 788 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 906
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5E8EE8 (uncharacterized protein LOC124719790 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E8EE8) HSP 1 Score: 56.2 bits (134), Expect = 1.120e-6 Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 160 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
+I + G LL ++ I RWKE+F ELLNA PT+ S DD E L P EPSL E+KE++ KL KA G D +
Sbjct: 147 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5E4078 (uncharacterized protein LOC124718771 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E4078) HSP 1 Score: 56.6 bits (135), Expect = 1.190e-6 Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
R K+ + N+ + AE R D G ++ I + G +I + G LL ++ I RWKE+F ELLNA PT+ S DD E L P EPSL E+KE++ KL KA G D +
Sbjct: 429 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISISQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 547 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77868.15459.1 >prot_H-elongata_contig77868.15459.1 ID=prot_H-elongata_contig77868.15459.1|Name=mRNA_H-elongata_contig77868.15459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp NKAFKRAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCback to top mRNA from alignment at H-elongata_contig77868:3..413- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77868.15459.1 ID=mRNA_H-elongata_contig77868.15459.1|Name=mRNA_H-elongata_contig77868.15459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig77868:3..413- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77868:3..413- >mRNA_H-elongata_contig77868.15459.1 ID=mRNA_H-elongata_contig77868.15459.1|Name=mRNA_H-elongata_contig77868.15459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig77868:3..413- (Himanthalia elongata Himel1 dioecious)back to top |