mRNA_H-elongata_contig77797.15456.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA) HSP 1 Score: 263 bits (673), Expect = 2.180e-83 Identity = 165/300 (55.00%), Postives = 205/300 (68.33%), Query Frame = 1
Query: 1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQS----KRKEVFTPMPDHVIEGARNESAVTLGSVTPGTS--------TANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
GAP+NYV GLGRGAVGFTTRSDIGPARAP+ + G +D F P AGRGRG+ ++ AGRG+G G G D SE+N+DEFSGY R LF DTPYD DD+EAD IYE +DE +D RRKRRRE+ Q+E +KK R+E PKISDQFADLK L ++S EWE IPD+GDYSLKYK + KR E+F P+PD V+ GA S ++ G++TP + T++++ L+ ARG L KLDKMSDS++GQT V+PKGYLTDLNSLK+ SDAE+GDI+K
Sbjct: 15 GAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGT------QDAPFLPP-----AGRGRGV-EIPGRPGPSAGRGSGTAGMGGFGREKDENEDFGDYSETNYDEFSGYSSRGLFQDTPYDQDDKEADDIYEQVDERMDARRKRRRELKQLEELKKARKEMPKISDQFADLKSSLQNMSDAEWEMIPDIGDYSLKYKINTALQKRNEMFAPVPDSVL-GANAGSTIS-GTITPAGNGIETPSGMTSSVTGLAGARGAQLSHKLDKMSDSISGQTVVDPKGYLTDLNSLKLTSDAEIGDIKK 300
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA) HSP 1 Score: 277 bits (709), Expect = 4.550e-83 Identity = 163/290 (56.21%), Postives = 199/290 (68.62%), Query Frame = 1
Query: 1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGA-GRGAGRGSTGAVGGTDLSESNFDEFSGYRERLFG-DTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVTLGSVTPGTS---------TANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
GAP Y AG GRGA+GFTTRSDIGPAR+ +PE +FG P GY+AGRGRGMGDLA++ EG R G G D SESN+D+FSGY LFG D+PY+ DD EAD+IY+AID+ +D+RRKRRRE +E++KK R ERPK DQF DLK L +VS EW IPDVGD SLK+KQ KR+EVFTP PDH+IE R + P T +++++ LS AR TVL +KLDKMSDSV+GQT V+PKGYLTDLNS+KIN+D EVGDI++
Sbjct: 15 GAPQGYQAGFGRGAIGFTTRSDIGPARSSVPE-----------VNFGQPPPGYVAGRGRGMGDLARSQAEGGLPREEGDRDKG-----DYSESNYDDFSGYGGALFGGDSPYEDDDREADKIYQAIDDRMDSRRKRRREEQLLESLKKARAERPKAGDQFTDLKADLKNVSMEEWMGIPDVGDQSLKFKQRKRQEVFTPAPDHLIESQRAALVDAAAPIDPRTGLQTPMSAGGSSSIAGLSQARETVLSIKLDKMSDSVSGQTVVDPKGYLTDLNSIKINTDTEVGDIKR 288
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI) HSP 1 Score: 268 bits (685), Expect = 1.760e-80 Identity = 142/163 (87.12%), Postives = 148/163 (90.80%), Query Frame = 1
Query: 367 AIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVT------LGSVTPGTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
AIDEHVDTRRKRRRE AQ+EAMKKEREERPKISDQFADLKGHLA VSQ EWEAIPDVGDYSLKYKQSKR+E+FTPMPDHVIEGARN+ AV LG TPGTST N+SSL HARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKI+SDAEVGDIEK
Sbjct: 3 AIDEHVDTRRKRRREEAQVEAMKKEREERPKISDQFADLKGHLAGVSQSEWEAIPDVGDYSLKYKQSKRREIFTPMPDHVIEGARNDGAVVGTMDPALGGATPGTSTTNISSLGHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKISSDAEVGDIEK 165
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA) HSP 1 Score: 268 bits (686), Expect = 1.050e-79 Identity = 170/309 (55.02%), Postives = 206/309 (66.67%), Query Frame = 1
Query: 1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPL-PEGGAGPPGAAK------DPDFGPAPKGYIAGRGRGMG-DLAKA-----------NHEGAGRGA-GRGSTGAVGGTDLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQS----KRKEVFTPMPDHVIEG-----ARNESAVTLGSVTPGTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
GAP+NYV GLGRGAVGFTTRSDIGPAR+PL PEG A GA + P PAP ++ G GRG G D A AG G GR + D SE+N+DEFSGY LF DTPYD DD EAD IY+++DE +DTRRKRRREV +E +KK R+ERPKISDQFADLK L +S EW+ IPD+GDYSLK+K + KR E+F P+PDH++ G A N + G++TP T+ ++ L+ ARG VL KLDKMSDS+TGQT V+PKGYLTDLNSLK+ SDAE+GDI+K
Sbjct: 15 GAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGPPAP--FLPGAGRGRGSDFAGGAXXXXXXXXXXXXXXAGLGGFGRATDENEDFGDYSETNYDEFSGYSSGGLFQDTPYDQDDREADDIYDSVDERMDTRRKRRREVRMLEELKKARQERPKISDQFADLKAGLRGMSDAEWDQIPDIGDYSLKFKTNTALQKRNELFAPLPDHLLAGNAGAVAANGAGALNGTITPSGMTSTITGLAEARGAVLSHKLDKMSDSITGQTVVDPKGYLTDLNSLKLTSDAEIGDIKK 321
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD) HSP 1 Score: 265 bits (677), Expect = 2.070e-78 Identity = 169/310 (54.52%), Postives = 203/310 (65.48%), Query Frame = 1
Query: 1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPL-PEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMG-DLAKANHE-----------GAGRGAGRGSTGAVGGTDLSESNFDEFSGYRE-RLFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQS----KRKEVFTPMPDHVIEG-----ARNESAVTLGSVTPGTS--------TANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
GAP+NYV GLGRGAVGFTTRSDIGPARAP+ P+G P G A P Y+ G GRG G DL G G G GR D SE+N+D+FSGY LF DTPYD DD EAD IYE+IDE +D+RRKRRREV +E +KK R+ERPKISDQFADLK L ++S EWE IPD+GDYSLKYK + KR E+F P+PDH++ G A N ++ G++TP T+ ++ L+ ARG VL KLDKMSDS+TGQT V+PKGYLTDLNSLK+ SDAE+GDI+K
Sbjct: 15 GAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXAPP----YLPGAGRGRGVDLPXXXXXXXXXXXXXXXXGMG-GFGRDVDENEDYGDYSETNYDQFSGYSSVGLFQDTPYDQDDREADDIYESIDERMDSRRKRRREVKMLEELKKARQERPKISDQFADLKAGLQNMSDAEWEMIPDIGDYSLKYKTNTALQKRNEMFAPVPDHLLAGNASGVAANGASALNGTITPAGGMETPGNGMTSTITGLAEARGAVLSHKLDKMSDSITGQTVVDPKGYLTDLNSLKLTSDAEIGDIKK 319
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A1V9ZC51_9STRA (Pre-mRNA-processing factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC51_9STRA) HSP 1 Score: 265 bits (677), Expect = 7.250e-78 Identity = 161/296 (54.39%), Postives = 198/296 (66.89%), Query Frame = 1
Query: 4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRG--MGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVTLGSVTP-------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
AP+NYVAG+GRGA+GFTTRSDIGPAR+ P G GRGRG MG + G GRG+G G G D SE+N+DEFSGY LF D PYD DD EAD IY IDE +D++RKRRRE+ Q+E MKK R ERPKISDQFADLK L++VS EWEAIPD+GD+SL+YKQ +R E++TP+PD++++ S +G+ TP G T++++ L+ ARG VL LKLDKMSDS++GQT V+PKGYLTDLNSLKI SDAEVGDI+K
Sbjct: 175 APANYVAGVGRGAIGFTTRSDIGPARSDDPVDLIG------------------MGRGRGLTMGGI-PIGMPGGGRGSGTAGVGGFGRETDESGDRGDYSETNYDEFSGYTGAGLFNDMPYDQDDAEADDIYAKIDERMDSKRKRRRELKQLEDMKKARRERPKISDQFADLKTSLSEVSDAEWEAIPDIGDHSLRYKQQRRAEIYTPVPDNLLDPRTQTSTTVVGTDTPSGLASTIGGMTSSLTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYLTDLNSLKITSDAEVGDIKK 451
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A067CRR5_SAPPC (PRP1_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRR5_SAPPC) HSP 1 Score: 262 bits (670), Expect = 1.540e-77 Identity = 161/294 (54.76%), Postives = 196/294 (66.67%), Query Frame = 1
Query: 4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVTLGSVTP-------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
AP+NYVAGLGRGA+GFTTRSDIGPAR P G G + G AP G MG + G GRG+G G G D SE+N+DEFSGY LF DTPYD DD EAD IY IDE +D++RKRRRE+ Q+E +KK R ERPKISDQFADLK L+ VS EWEAIPD+GD+SL+YKQ +R E++TP+PD +++ + +G+ TP G T++ + L+ ARG VL LKLDKMSDS++GQT V+PKGYLTDLNSLKI SDAEVGDI+K
Sbjct: 12 APANYVAGLGRGAIGFTTRSDIGPARPDDPVDMLGAMGRGR----GTAPXXXXGGLM--MGGI-PIGMPGGGRGSGTAGVGGFGRETDESGDRGDYSETNYDEFSGYTGAGLFNDTPYDQDDAEADDIYAKIDERMDSKRKRRREMKQLEDIKKARRERPKISDQFADLKTTLSTVSDAEWEAIPDIGDHSLRYKQQRRAEIYTPVPDSLLDARAQTTNTVVGTDTPSGLASTVGGMTSSFTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYLTDLNSLKITSDAEVGDIKK 298
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A1V9ZAY2_9STRA (Pre-mRNA-processing factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAY2_9STRA) HSP 1 Score: 261 bits (668), Expect = 2.940e-77 Identity = 161/295 (54.58%), Postives = 197/295 (66.78%), Query Frame = 1
Query: 4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEG-ARNESAVTLGSVTP-------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
AP+NYVAGLGRGA+GFTTRSDIGPAR P G G + P P G MG + G GRG+G G G D SE+N+DEFSGY LF D PYD DD EAD IY +DE +D++RKRRRE+ Q+E MKK R ERPKISDQFADLK LA VS EWEAIPD+GD+SL+YKQ++R E++TP+PD++++ + + V G TP G T++++ L+ ARG VL LKLDKMSDS++GQT V+PKGYLTDLNSLKI SDAEVGDI+K
Sbjct: 12 APANYVAGLGRGAIGFTTRSDIGPARPDDPVDMLGAMGRGRG--MAPPPGGLT------MGGI-PIGLPGGGRGSGTAGVGGFGRETDDSGDRGDYSETNYDEFSGYTGTGLFNDMPYDQDDAEADDIYAKVDERMDSKRKRRRELKQLEDMKKARRERPKISDQFADLKTTLATVSDAEWEAIPDIGDHSLRYKQARRAEIYTPVPDNLLDPRTQTSTTVVSGLDTPSGMASTVGGMTSSLTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYLTDLNSLKITSDAEVGDIKK 297
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A6A5AMU0_9STRA (PRP1_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AMU0_9STRA) HSP 1 Score: 240 bits (613), Expect = 8.970e-75 Identity = 156/294 (53.06%), Postives = 188/294 (63.95%), Query Frame = 1
Query: 4 APSNYVAGLGRGAVGFTTRSDIGPARA--PLPEGGAGPPGAAKDPDFG----PAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGTDLSESNFDEFSGYRERLFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRK-EVFTPMPDHVIEGARNESA--VTLGSVTP---GTSTANMSS----LSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
AP+NYVAGLGRGA+GFTTRSDIGPAR+ P G PG + PAP I G + + G GR A G LF DTPYD DD EAD IY +DEH+D RRKRRRE+ Q+E MKK R ERPKISDQFADLK L VS EWEAIPD+GD+SL+YK S++K ++FTP+PDH+++ + +A V LG TP GTS + M+S L+ ARG VL LKLDKMSDS++GQT V+PKGY+T+LNSLKI SDAEVGDI+K
Sbjct: 12 APANYVAGLGRGAIGFTTRSDIGPARSDDPTDIAATGIPGMGRGRGVPLPQQPAPAMMIPPGGXXXXXXXRGSGTAGVGGFGR-EVDASGDRGXXXXXXXXXXXXGAGLFNDTPYDKDDAEADDIYAQVDEHMDNRRKRRRELKQLEDMKKARRERPKISDQFADLKSSLKGVSDAEWEAIPDIGDHSLRYKASQKKSDIFTPVPDHILDTRASTTASNVVLGGDTPLQTGTSISGMTSSLTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYMTELNSLKITSDAEVGDIKK 304
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: F0VZ29_9STRA (Uncharacterized protein AlNc14C1G170 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZ29_9STRA) HSP 1 Score: 253 bits (647), Expect = 5.080e-74 Identity = 163/307 (53.09%), Postives = 197/307 (64.17%), Query Frame = 1
Query: 4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHE----GAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSK----RKEVFTPMPDHVIE---GARNESAVTLGSVTP---------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
AP NYV GLGRGAVGFTTRSDIGPAR PL G GA P + GRGRG G N AGRG+G G G D SESN+DEFSGY LF DTPYD DD+EAD IYE IDE +D+RRKRRRE+ ++ +KK R+ERPKI+DQFADLK L VS +W IP++GD SLK+K + R ++F P+PDH+I G +++ + GS+TP GTST+ ++ L+ ARG VL LKLDKMSDS+ GQT V+PKGYLTDLNSLKI SD E+GDI+K
Sbjct: 38 APENYVPGLGRGAVGFTTRSDIGPARNPLAPEGLAVAGAGPFPPI-------MMGRGRGRGTDVVPNEMLLPISAGRGSGTAGMGGFGRETDENEDFGDYSESNYDEFSGYTGAGLFQDTPYDKDDQEADTIYEMIDERMDSRRKRRRELKILQEVKKARQERPKIADQFADLKESLKTVSDEQWAQIPEIGDRSLKHKTNTALQIRNQMFVPVPDHLIASSTGLQSDKNASSGSITPSILGGNETPGTSTS-VTGLAEARGAVLSLKLDKMSDSIMGQTVVDPKGYLTDLNSLKITSDVEIGDIKK 336 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77797.15456.1 >prot_H-elongata_contig77797.15456.1 ID=prot_H-elongata_contig77797.15456.1|Name=mRNA_H-elongata_contig77797.15456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=279bp GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPback to top mRNA from alignment at H-elongata_contig77797:925..2818+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77797.15456.1 ID=mRNA_H-elongata_contig77797.15456.1|Name=mRNA_H-elongata_contig77797.15456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at H-elongata_contig77797:925..2818+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77797:925..2818+ >mRNA_H-elongata_contig77797.15456.1 ID=mRNA_H-elongata_contig77797.15456.1|Name=mRNA_H-elongata_contig77797.15456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1674bp|location=Sequence derived from alignment at H-elongata_contig77797:925..2818+ (Himanthalia elongata Himel1 dioecious)back to top |