mRNA_H-elongata_contig77689.15447.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77689.15447.1
Unique NamemRNA_H-elongata_contig77689.15447.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A6H5KD48_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD48_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 8.730e-109
Identity = 177/201 (88.06%), Postives = 188/201 (93.53%), Query Frame = 1
Query:    1 QACTDLDTLTQQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQVSTFS 603
            +ACTDLDTLTQQATLTS+AT EAD+K +INT I  TNNRVAHAKGLLQAMREETEAMK +  RAKPSEVRVRENLQNTLTRKFVD+AKDYQNRQN +KT+VKKKAERQILAVKP+ATEEELT VFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTY DVRRLEASI+ELHKMFMDLALLVDRQGEMLDQIEYQV + S
Sbjct:   64 KACTDLDTLTQQATLTSSATVEADAKSQINTTIANTNNRVAHAKGLLQAMREETEAMKKDPSRAKPSEVRVRENLQNTLTRKFVDLAKDYQNRQNKYKTSVKKKAERQILAVKPSATEEELTTVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYHDVRRLEASILELHKMFMDLALLVDRQGEMLDQIEYQVKSAS 264          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A836CD59_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD59_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.470e-62
Identity = 115/197 (58.38%), Postives = 150/197 (76.14%), Query Frame = 1
Query:    4 ACTDLDTLTQQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQ-GDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQV 591
            AC  LD+LT+ A           +K +I  V+ +TN  V+HAK LL  +R ET A+K + +R+  + +RVR NL+ T TRKFVDVAK+YQN+QN +K+ VK KAER + AVKPT TE+E+ AVF+Q+DGV+RV+EAA++QQ GDPVEV +VL EV+D Y DVRRLEASI+ELH+MFMDLALLV++QGE LD IE+QV
Sbjct:   57 ACKQLDSLTEAAIFAPMDKGGETAKDKITEVLAKTNKHVSHAKTLLHDLRTETAALKRDPKRSTNANIRVRANLETTFTRKFVDVAKEYQNKQNRYKSQVKGKAERAVKAVKPTVTEDEMAAVFQQDDGVKRVLEAAVMQQSGDPVEVANVLAEVQDQYEDVRRLEASILELHRMFMDLALLVEQQGETLDVIEFQV 253          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A836CCH9_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH9_9STRA)

HSP 1 Score: 170 bits (430), Expect = 7.270e-49
Identity = 101/196 (51.53%), Postives = 137/196 (69.90%), Query Frame = 1
Query:    4 ACTDLDTLTQQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQV 591
            AC +LD L   A         A +K+ ++ ++T+TN   +H+K LL A+R ET  +K + +    + +RVR NL+ +   KFVD AK+Y+N+Q+ ++  VK+KAER I AVKP  TEEE+TAVF  EDGV RV++AA+LQ    ++   VL EV+DTY+DVRRLEASIMELH+MFMDLALLV++QGE LD IE QV
Sbjct:   51 ACKELDKLASAALFAPLEQDGASAKEAMSALLTKTNRITSHSKTLLNAIRAETTELKRDRKGITDANLRVRVNLERSTLTKFVDAAKEYENKQSRYRLQVKRKAERVIRAVKPLVTEEEMTAVFNHEDGVARVLQAAVLQSRTGID--DVLTEVQDTYKDVRRLEASIMELHRMFMDLALLVEQQGETLDNIELQV 244          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A4D9D821_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D821_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.040e-43
Identity = 94/187 (50.27%), Postives = 127/187 (67.91%), Query Frame = 1
Query:   31 QQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQV 591
            Q+A L +    EA   + +N VI  TN + A AK +L  M++ET  ++ +S R  PS++R+R+NL NTLTRKFVDV KDYQN Q  +K  +K K +RQ+  VKP A+ EE+ AVF+   G  +V+  AIL+ G    + +V + V D Y+DV  LEASI ELH+MF+D ALLV++QGEMLDQIEYQV
Sbjct:   80 QEAFLATTGPREAKLSQELNAVIQETNPKAARAKKMLSKMKDETTKLRQDS-RCTPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKDKVQRQVQIVKPDASTEEIEAVFKSGGGGDQVITQAILK-GANESIRNVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGEMLDQIEYQV 264          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A7S2FD15_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FD15_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.230e-39
Identity = 86/200 (43.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query:    4 ACTDLDTLTQQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQVSTFS 603
            AC ++  + QQ  L +  T+E +  ++++ +I +TN      K +L  M+EET+ +   + +AK +E R+RENL NTLTRKF++V K+YQ RQ  +K  VKKK  RQ+  VK  AT EE+  V +   G   + ++AIL+  +  EV     +  D Y+DV RLE S+ ELH+MF+D ALL ++QGE+LDQIEYQV   S
Sbjct:   52 ACKEIQNINQQMLLAT--TSETEISQKLSPIIDKTNKIAQRCKTILNTMKEETDTLARENDKAKANEQRIRENLVNTLTRKFMEVVKEYQKRQQDYKDDVKKKVTRQVKIVKEDATPEEIDQVMKSAGGTGAMFKSAILKSANN-EVVEAYSQAADQYQDVLRLEESMQELHQMFVDFALLTEQQGELLDQIEYQVHAAS 248          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A812WGN8_SYMMI (Stx3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WGN8_SYMMI)

HSP 1 Score: 135 bits (341), Expect = 7.310e-37
Identity = 81/167 (48.50%), Postives = 111/167 (66.47%), Query Frame = 1
Query:   94 VITRTNNRVAHAKGLLQAMREETEAMKTN--SQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQ 588
            +IT TN R A AK LLQ +RE+ + +K++  + + + +E+R+RENL NTLTRKFVDV K YQN Q  FK  +KKK +RQI  VKP AT EE+  V     G   + +  IL+      V +    V+D Y+DV RLEAS+ +LH+MF+D A L ++QGE+LDQIE+Q
Sbjct:   20 IITDTNKRAALAKQLLQRLREDCDGIKSSPSTSQKEANELRIRENLINTLTRKFVDVMKSYQNAQQKFKLDIKKKMKRQIQIVKPDATPEEIDEVIISGGGAGEIFKNVILKGTPSDSVRNATRNVQDKYQDVMRLEASVAQLHEMFVDFAQLTEQQGELLDQIEFQ 186          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: K0SR65_THAOC (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SR65_THAOC)

HSP 1 Score: 140 bits (353), Expect = 1.020e-36
Identity = 84/192 (43.75%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   16 LDTLTQQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQV 591
            ++ L  +A L ++ T EA   + I T++  TN R    K LL  ++EE   +K   ++AKP+++RVRENL NTL RKF+D  K YQN Q  +KT VKKK  RQ+  +KP AT++E+  +   E G + + +  IL  G   ++      V   Y+D+  LEAS+ ELH+MF+D ALL D+QGE+LDQIEYQV
Sbjct:  100 INALKDKAVLATSETEEAQISEMIRTLVEGTNGRAKTCKNLLGLLKEENSNLK-KEEKAKPTDLRVRENLVNTLLRKFIDEMKRYQNAQQQYKTDVKKKVTRQVQIIKPDATDQEVDDIMRSEGGREALYQQQILSGGVNDQIKTQYRAVAGKYQDILTLEASVAELHQMFLDFALLTDQQGELLDQIEYQV 290          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A7S2LQF4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQF4_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.780e-36
Identity = 77/167 (46.11%), Postives = 105/167 (62.87%), Query Frame = 1
Query:   97 ITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQVST 597
            +T TN R    K +L  ++EE   +K     AKP+++RVRENL NTL RKF+D  K YQN Q  +KT VKKK  RQ+  V+P AT++E+  +   E G + + +  IL  G   ++      V   Y+DV  LEAS+ ELH+MF+D ALL ++QGE+LDQIEYQV T
Sbjct:    1 VTDTNGRAKKCKNMLGLLKEENANLKKTEGAAKPTDLRVRENLVNTLLRKFIDEMKRYQNSQQQYKTDVKKKVTRQVQMVRPNATDQEVDEIMRSEGGREALYQQQILSGGVNDQIKTQYRAVAGKYQDVLTLEASVAELHQMFLDFALLTEQQGELLDQIEYQVKT 167          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A7S2RH32_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RH32_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.540e-35
Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 1
Query:   64 EADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQV 591
            EAD    +  +I  TN R    K +L  ++EE E +K  +   KPS++R+R+NL NTLTRKFVD  K YQN Q  +KT ++KKA RQI  +KP ATEEE+  + + + G + + +  IL  G    +      V   Y+DV  LE S+ ELH++F D ALL D+QGE+LDQIE+ V
Sbjct:   11 EADLSNEMRPLIDETNKRAKRTKNILSLLKEENEKLKKKN--VKPSDLRIRQNLCNTLTRKFVDEIKQYQNAQQKYKTDLRKKAARQIKVIKPDATEEEVDVIMKTDGGREALYKETILSGGVNDNIKTAYANVAGKYQDVLALEQSVAELHQLFQDFALLTDQQGELLDQIEFNV 184          
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Match: A0A7S2K4X5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K4X5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.130e-35
Identity = 83/192 (43.23%), Postives = 120/192 (62.50%), Query Frame = 1
Query:   25 LTQQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAMREETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTAVKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQ-GDPVEVTHVLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQVST 597
            + ++A L  +   E D   R+  ++  TN +  HAK LL+ ++++ E  K      K S++R+RENL NTLTRKFVD  K+YQN Q  +K+ +KKK +RQ+  VKP AT EE+ AV + E G   + +  IL    DP++  +    V   Y+DV  LEAS+ ELH+MF D ALL ++QGE+L+QIE+QV T
Sbjct:   67 INEEAVLAISTDKERDLSNRLRPLVDSTNKKAKHAKALLELIKKQNEQEKGKGN-IKNSDMRIRENLNNTLTRKFVDEMKEYQNAQQKYKSDIKKKVKRQVQIVKPDATNEEIDAVMKSEGGRDALYKDKILTGVADPIKNAYA--NVAGKYQDVLALEASVTELHQMFQDFALLTEQQGELLNQIEFQVET 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77689.15447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD48_9PHAE8.730e-10988.06t-SNARE coiled-coil homology domain-containing pro... [more]
A0A836CD59_9STRA2.470e-6258.38Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A836CCH9_9STRA7.270e-4951.53Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A4D9D821_9STRA2.040e-4350.27t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2FD15_9STRA9.230e-3943.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812WGN8_SYMMI7.310e-3748.50Stx3 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
K0SR65_THAOC1.020e-3643.75t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2LQF4_9STRA4.780e-3646.11Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2RH32_9STRA1.540e-3544.32Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2K4X5_9STRA2.130e-3543.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77689contigH-elongata_contig77689:300..2595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.0
Seed ortholog evalue6.1e-87
Seed eggNOG ortholog2880.D7G5P2
Preferred nameSYP111
KEGG rclassRC00002
KEGG koko:K02201,ko:K03321,ko:K04560,ko:K08486,ko:K14411
KEGG TC2.A.53.3
KEGG ReactionR03035
KEGG Pathwayko00770,ko01100,ko03015,ko04130,ko04721,ko04911,ko05031,map00770,map01100,map03015,map04130,map04721,map04911,map05031
KEGG ModuleM00120
GOsGO:0000003,GO:0000149,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0003006,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005802,GO:0005886,GO:0005911,GO:0006605,GO:0006612,GO:0006810,GO:0006833,GO:0006836,GO:0006886,GO:0006887,GO:0006904,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0008104,GO:0008150,GO:0009266,GO:0009409,GO:0009504,GO:0009506,GO:0009524,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010033,GO:0010119,GO:0010148,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0017156,GO:0022406,GO:0022414,GO:0023052,GO:0023061,GO:0030054,GO:0030133,GO:0030154,GO:0031201,GO:0031224,GO:0031347,GO:0031348,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032507,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0040007,GO:0042044,GO:0042221,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045055,GO:0045184,GO:0045185,GO:0046903,GO:0046907,GO:0048278,GO:0048284,GO:0048468,GO:0048489,GO:0048519,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050832,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051704,GO:0051707,GO:0055044,GO:0060560,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0080134,GO:0090150,GO:0090174,GO:0097305,GO:0097479,GO:0097480,GO:0097708,GO:0098542,GO:0098791,GO:0098796,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056,GO:1901700,GO:1990778
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5074@1,KOG0810@2759
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-12_008590.1
EC2.7.7.3
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size603
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77689.15447.1prot_H-elongata_contig77689.15447.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77689 300..2595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931182.7170217-CDS-H-elongata_contig77689:299..4511622931182.7170217-CDS-H-elongata_contig77689:299..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 300..451 -
1691679731.9153116-CDS-H-elongata_contig77689:299..4511691679731.9153116-CDS-H-elongata_contig77689:299..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 300..451 -
1622931182.731016-CDS-H-elongata_contig77689:1141..12081622931182.731016-CDS-H-elongata_contig77689:1141..1208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 1142..1208 -
1691679731.9317787-CDS-H-elongata_contig77689:1141..12081691679731.9317787-CDS-H-elongata_contig77689:1141..1208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 1142..1208 -
1622931182.7480512-CDS-H-elongata_contig77689:1514..16161622931182.7480512-CDS-H-elongata_contig77689:1514..1616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 1515..1616 -
1691679731.9420347-CDS-H-elongata_contig77689:1514..16161691679731.9420347-CDS-H-elongata_contig77689:1514..1616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 1515..1616 -
1622931182.7659585-CDS-H-elongata_contig77689:1883..20611622931182.7659585-CDS-H-elongata_contig77689:1883..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 1884..2061 -
1691679731.9516106-CDS-H-elongata_contig77689:1883..20611691679731.9516106-CDS-H-elongata_contig77689:1883..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 1884..2061 -
1622931182.7791705-CDS-H-elongata_contig77689:2491..25951622931182.7791705-CDS-H-elongata_contig77689:2491..2595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 2492..2595 -
1691679731.9636846-CDS-H-elongata_contig77689:2491..25951691679731.9636846-CDS-H-elongata_contig77689:2491..2595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77689 2492..2595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77689.15447.1

>prot_H-elongata_contig77689.15447.1 ID=prot_H-elongata_contig77689.15447.1|Name=mRNA_H-elongata_contig77689.15447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
QACTDLDTLTQQATLTSNATAEADSKKRINTVITRTNNRVAHAKGLLQAM
REETEAMKTNSQRAKPSEVRVRENLQNTLTRKFVDVAKDYQNRQNTFKTA
VKKKAERQILAVKPTATEEELTAVFEQEDGVQRVMEAAILQQGDPVEVTH
VLEEVKDTYRDVRRLEASIMELHKMFMDLALLVDRQGEMLDQIEYQVSTF
S
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mRNA from alignment at H-elongata_contig77689:300..2595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77689.15447.1 ID=mRNA_H-elongata_contig77689.15447.1|Name=mRNA_H-elongata_contig77689.15447.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2296bp|location=Sequence derived from alignment at H-elongata_contig77689:300..2595- (Himanthalia elongata Himel1 dioecious)
CAGGCGTGTACAGACCTGGACACCCTCACGCAGCAGGCGACGTTGACGTC GAACGCAACGGCGGAAGCAGACTCGAAAAAGCGGATCAACACCGTCATCA CCAGGTGGGAGTGTGGGCGTGATCGTACCCATGATTGACAGCGAAGATAT CACCAACCAACCAACCCTCTCCCCCCTTCATACCTAGCTCGTATTAGATG GCTCTAGATGGTGTCTGTCCCTGTACGCTCTGTGAGCATTAGCGAAAAAA GTGGGTGCCTATGACACCCCGTTTTGGGGGGCTAAAGGATGCCCAGCGTT CTTGCCCGGGCGACTCCTGCCCTCGTGCCACACGCCTCTATCTTTTCGAA GGCTTGATCTTGGATAGGAGGGATTCTGACGCGCGGGCGAGACGCTCGCT TCGGAAGAATTGTAAACTGTTTCAATGCACTGTCCCACACGACACTCGTC GGAGCTGGCGGAGAGTATCGATCCCCAGCCTTACCATAACTTCGCTGGTT CACATGCGTCGCTTTTATCATCCCACCGTGGCAGGACGAATAATCGCGTA GCCCACGCTAAGGGACTGCTCCAGGCCATGCGCGAGGAGACGGAGGCGAT GAAAACCAACTCCCAGAGGGCAAAGCCTTCCGAAGTGCGCGTGCGGGAAA ACCTTCAGAACACGCTCACACGGAAGTTCGTTGACGTCGCGAAAGACTAC CAAAATCGACAGGTCGGCCTCGGCGGAAACCGACCGACCGGCGAACATTT TGATTGCTGTTTGTCGTTTGCCCTAGGGGGGTAGTCTTCTGGGGGTGCAT ATGACGGGGGGCGGTGAGTAGGAGTAAAAATGTTGAATCAACTGGGCCGA AGAAGCTCTGTGTCTACGAAGTTGATCTTGTCTCGAGTCTCCGTGGCGCT AGAATCAAAACGCCTATATAATCTTCTCAAGGAAGGGAATAACCCCGCTG ACTTGACTTCGCCGAATCCGCCATTCCAGAATACATTCAAGACTGCGGTC AAAAAGAAGGCAGAGCGGCAGATCTTGGCGGTGAAGCCTACGGCGACCGA AGAAGAGCTCACGGCCGTTTTCGAACAGGAGGTAAAGCAGTGGAGGGGAA AAGATGCATGGAAAAAAACACAAACTGATCGTTGGATGCAGTTACTGCTG CACTCTGCGCGGTTCGAATCCCGCACACTTTTTTTCTTAATTTATCACAT CTGAAGACGATTTTAACCCATTCGAGGTTTCCGTGCGCCGAGCGAAGCGT CTCGTTTAAAAATCTGACCGCTGTTGTTGAAAGTGCGCCGACTAGCAGAA CCTAATACACAAGGACTCTCCCCATTGCTCCGCGACACCTCTCGCCAATG TCGCGCTCCTCCGCCCCACCCCCACTCCGCAAGACAGGACGGCGTACAGC GGGTGATGGAAGCGGCCATCCTGCAACAAGGAGACCCTGTGGAAGTGACA CATGGTTAGTCTTCTTAACGCGCCTCGCGAATAAAAAATCGTGCGCGCCT GGTCGTGCCTACATCTAAAACACTCTCCTGATCCTACCGTACGTCGGGAA ATGTCTTGTCCGGAAGGTATCTTTGCTCTCCTAGCTCCCACGGCATTCTG AGTGGAAGGCTCCCCTGTCCCCAGCCCAGGCGGGCGATACGGTCATAATC CGTGACTTTTCACTCTCCCATGGAGAACAGCAACGGAATTAATGTCGGTC GCTTGGTACCAGCAGTGCTGCGTATACCACGATTATGATATATAATTGCT GACCCTTTTCTCTTGCCGCGGTGATGCACTCTCTCCGATCTCGGTCGGAG GGCGCACTCTCGCCGGTCACTGCCGCGGTCTATCGTAGACGACGTTGGTG TGTTTAACGCCCCCATACCCGCAGAAAGGGGATGTACCATTGGTGTCCCC GAACGATTGTTATACCTACCCATACACAACGGATAAGAAAATATATCGTG CAATAGGTTTTCCAAATCCTAGTGTGCGATGTCTTGGCCTGTCGGTATTG GCGAGAAAGGGGAGAAGGAGATGAGAGGGGGGAGGGGCGTCCTACCATCC CCGGGGTATGTAACACTCCTTACAGTTATGGAGCGGAAGTCAGTCGAGAT CTTCTGTTTCCGTTTGTTGAACCGCCTCCCCGATGCCCCGGCAGTCTTGG AGGAGGTGAAGGACACTTACCGCGACGTACGACGGCTTGAAGCGTCTATT ATGGAGCTGCACAAGATGTTTATGGACCTCGCGCTTCTGGTAGATAGACA AGGGGAGATGCTAGACCAGATAGAGTACCAGGTAAGTACGTTCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig77689:300..2595-

>mRNA_H-elongata_contig77689.15447.1 ID=mRNA_H-elongata_contig77689.15447.1|Name=mRNA_H-elongata_contig77689.15447.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig77689:300..2595- (Himanthalia elongata Himel1 dioecious)
CAGGCGTGTACAGACCTGGACACCCTCACGCAGCAGGCGACGTTGACGTC
GAACGCAACGGCGGAAGCAGACTCGAAAAAGCGGATCAACACCGTCATCA
CCAGCAGGCGTGTACAGACCTGGACACCCTCACGCAGCAGGCGACGTTGA
CGTCGAACGCAACGGCGGAAGCAGACTCGAAAAAGCGGATCAACACCGTC
ATCACCAGGACGAATAATCGCGTAGCCCACGCTAAGGGACTGCTCCAGGC
CATGCGCGAGGAGACGGAGGCGATGAAAACCAACTCCCAGAGGGCAAAGC
CTTCCGAAGTGCGCGTGCGGGAAAACCTTCAGAACACGCTCACACGGAAG
TTCGTTGACGTCGCGAAAGACTACCAAAATCGACAGGACGAATAATCGCG
TAGCCCACGCTAAGGGACTGCTCCAGGCCATGCGCGAGGAGACGGAGGCG
ATGAAAACCAACTCCCAGAGGGCAAAGCCTTCCGAAGTGCGCGTGCGGGA
AAACCTTCAGAACACGCTCACACGGAAGTTCGTTGACGTCGCGAAAGACT
ACCAAAATCGACAGAATACATTCAAGACTGCGGTCAAAAAGAAGGCAGAG
CGGCAGATCTTGGCGGTGAAGCCTACGGCGACCGAAGAAGAGCTCACGGC
CGTTTTCGAACAGGAGAATACATTCAAGACTGCGGTCAAAAAGAAGGCAG
AGCGGCAGATCTTGGCGGTGAAGCCTACGGCGACCGAAGAAGAGCTCACG
GCCGTTTTCGAACAGGAGGACGGCGTACAGCGGGTGATGGAAGCGGCCAT
CCTGCAACAAGGAGACCCTGTGGAAGTGACACATGGACGGCGTACAGCGG
GTGATGGAAGCGGCCATCCTGCAACAAGGAGACCCTGTGGAAGTGACACA
TGTCTTGGAGGAGGTGAAGGACACTTACCGCGACGTACGACGGCTTGAAG
CGTCTATTATGGAGCTGCACAAGATGTTTATGGACCTCGCGCTTCTGGTA
GATAGACAAGGGGAGATGCTAGACCAGATAGAGTACCAGGTAAGTACGTT
CAGCTCTTGGAGGAGGTGAAGGACACTTACCGCGACGTACGACGGCTTGA
AGCGTCTATTATGGAGCTGCACAAGATGTTTATGGACCTCGCGCTTCTGG
TAGATAGACAAGGGGAGATGCTAGACCAGATAGAGTACCAGGTAAGTACG
TTCAGC
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