mRNA_H-elongata_contig77614.15445.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77614.15445.1
Unique NamemRNA_H-elongata_contig77614.15445.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.180e-23
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   16 PPCRLSS--TVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            P  R+S+  T MSAES   ASRGDFLKSAA  AA+ GLAA P +AEVDNPVVPFLGGG+KIDVNNANVRAYIKL GM
Sbjct:   24 PAARMSARTTTMSAESP--ASRGDFLKSAAGAAALLGLAA-PALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGM 97          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.360e-18
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   10 IAPPCRLSSTVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            +AP   + ST +S  + P   R  FLKSAA+ A V    AAP +AE+DNPVVPFLGGG+K+D+NNANVRAYIK+PGM
Sbjct:   19 VAPSAGVRSTQLSMTAQPV-DRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGM 94          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: L1JVD9_GUITC (PS II complex 12 kDa extrinsic protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVD9_GUITC)

HSP 1 Score: 65.1 bits (157), Expect = 1.060e-11
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   70 SRGDFLKSAASVAAVFGLAAAPVIA--EVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            SR D +K+ A+    FG+AAAPV+A  E+D   VPFLGG +KID+NNANVR Y KLPGM
Sbjct:    7 SRRDLIKNVAA----FGVAAAPVLANAEIDYANVPFLGGSDKIDINNANVRVYTKLPGM 61          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A1X6NM48_PORUM (PS II complex 12 kDa extrinsic protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM48_PORUM)

HSP 1 Score: 64.7 bits (156), Expect = 2.710e-11
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   10 IAPPCRLSSTVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            +A P   SS  MSAE  PA SR   L  AA+ A      + P +AE +   VPFLGG + ID+NNANVRAY K PGM
Sbjct:   12 VAAPAARSSICMSAEDKPAVSRRAALTGAAAAALAAMAGSLPAMAETEYANVPFLGGSDIIDINNANVRAYAKYPGM 88          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A7S2TDD2_PROMC (PS II complex 12 kDa extrinsic protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TDD2_PROMC)

HSP 1 Score: 57.0 bits (136), Expect = 1.830e-8
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   34 STVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            ST ++AE   A  R  F K+AA+ AAV G AAAP  A +D   + +LGG   +D+NNANVRAY+K+PGM
Sbjct:    6 STALNAE---AGRREFFSKAAAATAAVVG-AAAPANAVIDYENIGYLGGSSIVDLNNANVRAYLKMPGM 70          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A7S1Z9N8_TRICV (PS II complex 12 kDa extrinsic protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9N8_TRICV)

HSP 1 Score: 57.4 bits (137), Expect = 1.870e-8
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   31 SSTVMSAESSPAASRGDFLKSA--ASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            SST ++AE    ASR DFL  A  A VAAV G A A  + + +N  + FLGG   +D+NNANVR Y+K+PGM
Sbjct:   24 SSTALNAE----ASRKDFLAGAMAAGVAAVAGAAPANAVRDYEN--IGFLGGSSTVDINNANVRVYLKMPGM 89          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: L1JC51_GUITC (PS II complex 12 kDa extrinsic protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JC51_GUITC)

HSP 1 Score: 56.2 bits (134), Expect = 3.100e-8
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   70 SRGDFLKSAASVAAVFGLAAAPVIA--EVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            SR D LK+  + AA+    AAP +A  E+D   +P+LGG +KIDVNNAN+R Y KLPGM
Sbjct:    8 SRRDMLKTFVAGAAI----AAPALANAEIDYANLPYLGGSDKIDVNNANIRVYTKLPGM 62          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.700e-8
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   67 ASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            A R +F   AA  AAV   AAAP  A VD   + +LGG   +D+NNANVR Y+K+PGM
Sbjct:   32 AGRREFFGKAAGAAAVAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGM 89          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A7S2SQF2_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQF2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.760e-8
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   16 PPCRLSST--VMSAESSPAASRGDFL-KSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            P  R++ T  VMSAE   A  R +FL K+AA+ AA+  LAA    A++D   + +LGGG++ID+NNANVRAY++LPGM
Sbjct:   21 PSARMARTRVVMSAE---AEGRRNFLAKTAAAAAALAPLAAN---ADIDYEGIKYLGGGDQIDLNNANVRAYLRLPGM 92          
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: K0TEZ3_THAOC (PS II complex 12 kDa extrinsic protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEZ3_THAOC)

HSP 1 Score: 55.8 bits (133), Expect = 7.190e-8
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   37 TVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAE--VDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
            T ++AE   AA R  FL      AA FG AA P  A   VD   V +LGGG  +DVNNANVRAY++LPGM
Sbjct:   26 TALNAE---AADRRSFL----GAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGM 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E0_ECTSI2.180e-2375.32PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A836CCI8_9STRA1.360e-1859.74PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
L1JVD9_GUITC1.060e-1161.02PS II complex 12 kDa extrinsic protein n=1 Tax=Gui... [more]
A0A1X6NM48_PORUM2.710e-1150.65PS II complex 12 kDa extrinsic protein n=1 Tax=Por... [more]
A0A7S2TDD2_PROMC1.830e-852.17PS II complex 12 kDa extrinsic protein n=1 Tax=Pro... [more]
A0A7S1Z9N8_TRICV1.870e-851.39PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
L1JC51_GUITC3.100e-854.24PS II complex 12 kDa extrinsic protein n=1 Tax=Gui... [more]
A0A6U4G1G5_9STRA3.700e-851.72PS II complex 12 kDa extrinsic protein n=1 Tax=Min... [more]
A0A7S2SQF2_9STRA5.760e-851.28PS II complex 12 kDa extrinsic protein n=1 Tax=Rhi... [more]
K0TEZ3_THAOC7.190e-852.86PS II complex 12 kDa extrinsic protein n=1 Tax=Tha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77614contigH-elongata_contig77614:1465..1707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1e-08
Seed eggNOG ortholog55529.EKX52337
KEGG koko:K02719
KEGG Pathwayko00195,ko01100,map00195,map01100
EggNOG free text desc.Photosystem II 12 kDa extrinsic protein (PsbU)
EggNOG OGs2D3K6@1,2S50I@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionphotosystem II 12 kDa extrinsic protein
Ec32 orthologEc-28_000560.1
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931182.4912963-CDS-H-elongata_contig77614:1464..17071622931182.4912963-CDS-H-elongata_contig77614:1464..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77614 1465..1707 +
1691679731.849535-CDS-H-elongata_contig77614:1464..17071691679731.849535-CDS-H-elongata_contig77614:1464..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77614 1465..1707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77614.15445.1prot_H-elongata_contig77614.15445.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77614 1465..1707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77614.15445.1

>prot_H-elongata_contig77614.15445.1 ID=prot_H-elongata_contig77614.15445.1|Name=mRNA_H-elongata_contig77614.15445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
PSIIAPPCRLSSTVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEV
DNPVVPFLGGGEKIDVNNANVRAYIKLPGM*
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mRNA from alignment at H-elongata_contig77614:1465..1707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77614.15445.1 ID=mRNA_H-elongata_contig77614.15445.1|Name=mRNA_H-elongata_contig77614.15445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig77614:1465..1707+ (Himanthalia elongata Himel1 dioecious)
CCTTCGATTATTGCACCTCCGTGCCGATTAAGCTCCACGGTCATGTCCGC CGAGAGCTCGCCAGCGGCGAGTCGGGGTGACTTCCTCAAGTCCGCGGCGT CTGTGGCGGCGGTCTTTGGTCTCGCGGCGGCTCCCGTGATTGCCGAGGTC GACAACCCCGTGGTGCCATTCTTGGGAGGAGGCGAAAAGATCGATGTCAA CAACGCGAACGTCCGTGCATACATCAAGCTGCCGGGAATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig77614:1465..1707+

>mRNA_H-elongata_contig77614.15445.1 ID=mRNA_H-elongata_contig77614.15445.1|Name=mRNA_H-elongata_contig77614.15445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig77614:1465..1707+ (Himanthalia elongata Himel1 dioecious)
CCTTCGATTATTGCACCTCCGTGCCGATTAAGCTCCACGGTCATGTCCGC
CGAGAGCTCGCCAGCGGCGAGTCGGGGTGACTTCCTCAAGTCCGCGGCGT
CTGTGGCGGCGGTCTTTGGTCTCGCGGCGGCTCCCGTGATTGCCGAGGTC
GACAACCCCGTGGTGCCATTCTTGGGAGGAGGCGAAAAGATCGATGTCAA
CAACGCGAACGTCCGTGCATACATCAAGCTGCCGGGAATGTGACCTTCGA
TTATTGCACCTCCGTGCCGATTAAGCTCCACGGTCATGTCCGCCGAGAGC
TCGCCAGCGGCGAGTCGGGGTGACTTCCTCAAGTCCGCGGCGTCTGTGGC
GGCGGTCTTTGGTCTCGCGGCGGCTCCCGTGATTGCCGAGGTCGACAACC
CCGTGGTGCCATTCTTGGGAGGAGGCGAAAAGATCGATGTCAACAACGCG
AACGTCCGTGCATACATCAAGCTGCCGGGAATGTGA
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