mRNA_H-elongata_contig77595.15441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77595.15441.1
Unique NamemRNA_H-elongata_contig77595.15441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 9.870e-28
Identity = 61/89 (68.54%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRL 267
            RRYGASMY+ +F  FSE YHRQE+VGAL+TH GAGS  ETDSAL  LSALA S SD   GLRPFAAFIR L+DY  G+TH QVR+  R+
Sbjct:  371 RRYGASMYREIFSGFSEAYHRQEVVGALITHCGAGSELETDSALSALSALA-SPSDGGSGLRPFAAFIRALMDYMQGYTHYQVRKVFRI 458          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A7M7MYJ9_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7MYJ9_STRPU)

HSP 1 Score: 72.8 bits (177), Expect = 5.350e-13
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    7 YGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRR 255
            +G+ +YQ  F  F ++Y +QE+VGAL+TH G+G  AE DSAL +LS+LA S +     L PFA FI+G+LDY +  T  QV++
Sbjct:  456 FGSKVYQTAFAAF-DVYSKQEVVGALVTHIGSGLSAEMDSALDILSSLASSHTK---DLAPFAVFIKGVLDYLDNLTMTQVKK 534          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A4V1J5W5_9FUNG (Fanconi anaemia protein FANCD2 (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J5W5_9FUNG)

HSP 1 Score: 68.2 bits (165), Expect = 1.770e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   19 MYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVR 252
            MYQA F  F + Y RQE+VGAL+TH G+G   E D++L  L A+ + S  A   +RP+A FIRG+LDY +    +QVR
Sbjct:  266 MYQACFTIF-DAYFRQEVVGALVTHIGSGDSCEIDTSLAALQAITLRSPAA---MRPYAIFIRGILDYIDNLNFDQVR 339          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A835UL84_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UL84_VANPL)

HSP 1 Score: 66.6 bits (161), Expect = 7.680e-11
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
            R +G  +Y+++F+E  ++Y RQE++GALLTH G+G   E +SAL  L+ LAV  S+    L PFA+++ G++D+   F    + +   +F
Sbjct:  453 RYFGIHLYKSLFEELKDIYSRQEVLGALLTHIGSGHDQEVNSALETLNLLAVRLSE---DLIPFASYLTGVMDHMENFDDANLHKIYEVF 539          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A6P8ICE2_ACTTE (Fanconi anemia group D2 protein-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8ICE2_ACTTE)

HSP 1 Score: 65.5 bits (158), Expect = 2.000e-10
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    7 YGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRR 255
            Y  ++Y+  F  F +LY +QEIVGAL+TH G+G   E DS+L VLS L  +       + PFA FI+G+LDY +  T +Q+R+
Sbjct:  438 YACAIYRLAFASF-DLYCKQEIVGALVTHIGSGFATEADSSLDVLSDLVETHPKI---MAPFAVFIKGILDYLDNLTLSQIRK 516          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A2K2DS13_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DS13_BRADI)

HSP 1 Score: 65.5 bits (158), Expect = 2.000e-10
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
            R +   ++ A+F+EFS+ + RQE+VG+L+TH G+G   E  SAL ++ +L  ++SD    L P A+ I G+LDY   F  + +R+   +F
Sbjct:  399 REFATYLFTALFEEFSDTFSRQELVGSLITHIGSGVSYEVSSALDIMISLTTNNSDE---LIPVASHITGILDYLESFHEDNLRKVYEIF 485          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A833QU46_9POAL (Fanconi anemia group D2 protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QU46_9POAL)

HSP 1 Score: 65.1 bits (157), Expect = 2.730e-10
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
            R +   ++ A+F+EF ++Y RQEI+G L+TH G+G   E  SAL VL  L  + SD    L P ++ I G++DY  GF  + +R+   +F
Sbjct:  424 RDFAMHLFMALFEEFCDIYSRQEILGILVTHIGSGVSHEVSSALDVLVLLTSNHSDE---LIPLSSHINGIMDYLEGFNEDNLRKVYEIF 510          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A8J4VII3_9ROSI (Uncharacterized protein n=7 Tax=Fagaceae TaxID=3503 RepID=A0A8J4VII3_9ROSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.740e-10
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
            R +G  +Y  +F+EF ++Y RQE++GAL+TH G+G  +E  SAL  ++ LA   +     L P ++ I G+LDY +GF+   + +    F
Sbjct:  437 REFGIHIYTCLFEEFVDIYSRQEVLGALITHVGSGVTSEVQSALETMTLLASKFAQ---DLIPLSSHITGILDYLDGFSVENLHKVYEAF 523          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: UPI001C531A74 (Fanconi anemia group D2 protein homolog isoform X1 n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C531A74)

HSP 1 Score: 64.3 bits (155), Expect = 5.110e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
            R+YG  MY ++F+EF++ Y RQEI+GAL+TH G+    E  SAL  +  LA   ++    L P +++I G+LDY  GF   ++ +   +F
Sbjct:  451 RQYGIHMYTSLFEEFTDNYSRQEILGALVTHVGSAVGYEVSSALDTMVLLASKYAEE---LIPLSSYINGMLDYLEGFNIEKLHKVYEVF 537          
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A3L6FVM5_MAIZE (Fanconi anemia group D2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6FVM5_MAIZE)

HSP 1 Score: 64.3 bits (155), Expect = 5.120e-10
Identity = 33/90 (36.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
            R + A ++ A+F+EF++ Y RQE+VG+L+TH G+G   E  SAL ++ +L  ++S+    L P ++ I G+LDY   F+ + +R+   +F
Sbjct:  624 REFAAYLFTALFEEFTDTYSRQELVGSLVTHIGSGVSYEVSSALDIMISLTSNNSEE---LIPISSHITGILDYLESFSEDNLRKVYDIF 710          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI9.870e-2868.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7M7MYJ9_STRPU5.350e-1348.19Uncharacterized protein n=2 Tax=Echinacea TaxID=76... [more]
A0A4V1J5W5_9FUNG1.770e-1148.72Fanconi anaemia protein FANCD2 (Fragment) n=1 Tax=... [more]
A0A835UL84_VANPL7.680e-1137.78Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A6P8ICE2_ACTTE2.000e-1044.58Fanconi anemia group D2 protein-like n=1 Tax=Actin... [more]
A0A2K2DS13_BRADI2.000e-1037.78Uncharacterized protein n=2 Tax=Brachypodium dista... [more]
A0A833QU46_9POAL2.730e-1038.89Fanconi anemia group D2 protein n=1 Tax=Carex litt... [more]
A0A8J4VII3_9ROSI3.740e-1036.67Uncharacterized protein n=7 Tax=Fagaceae TaxID=350... [more]
UPI001C531A745.110e-1038.89Fanconi anemia group D2 protein homolog isoform X1... [more]
A0A3L6FVM5_MAIZE5.120e-1036.67Fanconi anemia group D2 n=1 Tax=Zea mays TaxID=457... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77595contigH-elongata_contig77595:150..1076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
KEGG koko:K10891
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77595.15441.1prot_H-elongata_contig77595.15441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77595 168..1076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.5504255-UTR-H-elongata_contig77595:149..1671622931181.5504255-UTR-H-elongata_contig77595:149..167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77595 150..167 +
1691679731.6442602-UTR-H-elongata_contig77595:149..1671691679731.6442602-UTR-H-elongata_contig77595:149..167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77595 150..167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.5695748-CDS-H-elongata_contig77595:167..3221622931181.5695748-CDS-H-elongata_contig77595:167..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77595 168..322 +
1691679731.6564975-CDS-H-elongata_contig77595:167..3221691679731.6564975-CDS-H-elongata_contig77595:167..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77595 168..322 +
1622931182.1098342-CDS-H-elongata_contig77595:979..10761622931182.1098342-CDS-H-elongata_contig77595:979..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77595 980..1076 +
1691679731.6667082-CDS-H-elongata_contig77595:979..10761691679731.6667082-CDS-H-elongata_contig77595:979..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77595 980..1076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77595.15441.1

>prot_H-elongata_contig77595.15441.1 ID=prot_H-elongata_contig77595.15441.1|Name=mRNA_H-elongata_contig77595.15441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSD
ARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF
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mRNA from alignment at H-elongata_contig77595:150..1076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77595.15441.1 ID=mRNA_H-elongata_contig77595.15441.1|Name=mRNA_H-elongata_contig77595.15441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at H-elongata_contig77595:150..1076+ (Himanthalia elongata Himel1 dioecious)
AGGCGATATGGAGCCAGCATGTACCAAGCGATGTTCCAGGAATTTTCTGA ACTCTACCACCGGCAGGAGATTGTGGGCGCCCTCCTGACCCACGCAGGAG CCGGCTCCGTGGCCGAAACCGACTCTGCTTTGGTAGTGTTGTCGGCGCTA GCTGTCTCCTCCTCGGACGCCAGGTATTATAAACGCATACATACAACGTA TCGGTACACAGCATGGAAAGAAAATGTCTGGAAATTTCTTGGGAAGTGCG TGCCATGTTTTGTAACCGTAGGTAGGCTTTCTGGAGAAGGGTGGGGGAAG AGCGGGGGGAGGGGTGAAATAATTGGTTGGTTCGCTGGCTCCAGGCGCAA GAAAGGAAATGCCATTCGGTTCTTTTTCTAAGGGATAACAAGTACAGTAT GCGGGGGGAGCGGAGTGAAGGAGGATTCCTTGCGTTAGTTTGGCGGCTCT TTTCCGCTCTATAACCCCTTTTTTTTTTACAGGGGGGGGGGGGGTAAGGA AGGTTTGGGGGGGGTGTTATCTGGAGAGGCTTTGTAAACNNNNNNNNNNT CTCCGTTTTTTTTTTGTGGGGGGGGGGGGGGGGGGTAATGAATGTTAGAG GGGTGTTGTATCCTGAAGAGCATTGTAAACCACGCATCCCCAGCGATGCC AGGACGAAGCAGCATGCCGGACGTTCGCTAGGCAGGCTGCAGTTCTCGCT TTACATATTTTACGGCCACGCTTTGTTTTTGTTTTGTACTGTGATGTTTT GCCGAAGTTTTCTTTGATAAATAATGAAGTGATGATTTGTTTTTGTTCAC AACTGTTTTTTTTTAATCTTTTCGAAGGAGGGGAGGACTACGGCCGTTCG CCGCCTTCATCCGAGGCCTACTCGACTACACGAACGGCTTTACCCATAAT CAGGTGCGACGGTTTCCTAGGCTGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig77595:150..1076+

>mRNA_H-elongata_contig77595.15441.1 ID=mRNA_H-elongata_contig77595.15441.1|Name=mRNA_H-elongata_contig77595.15441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig77595:150..1076+ (Himanthalia elongata Himel1 dioecious)
ATGTACCAAGCGATGTTCCAGGAATTTTCTGAACTCTACCACCGGCAGGA
GATTGTGGGCGCCCTCCTGACCCACGCAGGAGCCGGCTCCGTGGCCGAAA
CCGACTCTGCTTTGGTAGTGTTGTCGGCGCTAGCTGTCTCCTCCTCGGAC
GCCAGATGTACCAAGCGATGTTCCAGGAATTTTCTGAACTCTACCACCGG
CAGGAGATTGTGGGCGCCCTCCTGACCCACGCAGGAGCCGGCTCCGTGGC
CGAAACCGACTCTGCTTTGGTAGTGTTGTCGGCGCTAGCTGTCTCCTCCT
CGGACGCCAGGGGAGGACTACGGCCGTTCGCCGCCTTCATCCGAGGCCTA
CTCGACTACACGAACGGCTTTACCCATAATCAGGTGCGACGGTTTCCTAG
GCTGTTTGGGAGGACTACGGCCGTTCGCCGCCTTCATCCGAGGCCTACTC
GACTACACGAACGGCTTTACCCATAATCAGGTGCGACGGTTTCCTAGGCT
GTTT
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