mRNA_H-elongata_contig77582.15439.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77582.15439.1
Unique NamemRNA_H-elongata_contig77582.15439.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: D8LI30_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI30_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.560e-36
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            +EISKR EDTIHK+FLDPTGNHLLACLHGGETYYLHS + RPKRLLKWSGVVVEAVAFDSQRCTE S
Sbjct:   23 IEISKRQEDTIHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGS 89
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.000e-33
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            +EISKR EDTIHK+FLDPTGNHLLACLHGGETYYLHS + RPKRLLKWSGVVVEAVAFDSQRCTE S
Sbjct:  237 IEISKRQEDTIHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGS 303
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: A0A6P8H1B0_ACTTE (Vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H1B0_ACTTE)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-12
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            +E+S+R +DTI+KIFLDP+  HL+ C++  E+YYL   S +PK L K  G ++ AVA++  + TE S
Sbjct:   92 VELSRRMDDTIYKIFLDPSARHLIICMNSQESYYLARNSKKPKLLTKLRGHLISAVAWNKSKLTETS 158
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: D3BPC0_POLPP (7-fold repeat in clathrin and VPS proteins repeat-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BPC0_POLPP)

HSP 1 Score: 69.3 bits (168), Expect = 4.610e-12
Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCT 192
            +E ++RPE+ I+KIFLDPTG+HL+  +   E YY+HST  +PK   KW   ++E++A+D+   T
Sbjct:  104 IEFTRRPEERIYKIFLDPTGHHLIISMETEEVYYIHSTWKKPKLQAKWRVNLIESIAWDAADVT 167
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: UPI0009E26102 (vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E26102)

HSP 1 Score: 68.2 bits (165), Expect = 1.170e-11
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            ++I+KR +D+IH+IF+DPT  HL+ C+   E++YL   S +PK L K  G ++ A+A++  + TE S
Sbjct:   91 VDITKRVDDSIHRIFMDPTARHLIVCMKSQESFYLARNSKKPKPLAKMKGHLINAIAWNKSKLTESS 157
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: A0A6S7HQQ7_PARCT (Vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HQQ7_PARCT)

HSP 1 Score: 68.2 bits (165), Expect = 1.170e-11
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            +E+SK+PEDT++KIF DPT  H + CL   E+ YL   S +PK + K  G ++EAVA++  R  E +
Sbjct:   90 IEVSKKPEDTVYKIFQDPTARHAIICLRSYESLYLARNSKKPKPIPKLKGHLIEAVAWNKTRLNETT 156
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: A7RKZ9_NEMVE (Vacuolar protein sorting-associated protein 18 homolog n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RKZ9_NEMVE)

HSP 1 Score: 68.2 bits (165), Expect = 1.170e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            +E+ KR +D IH+IF+DPT  HL+ C+   E+YYL   S +PK + K  G ++ AVA++  + TE S
Sbjct:   65 VEVCKRLDDAIHRIFIDPTARHLIVCMKSQESYYLARNSKKPKPMTKMRGHLISAVAWNKSKLTESS 131
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: UPI000A2A96A1 (vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A96A1)

HSP 1 Score: 68.2 bits (165), Expect = 1.170e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            +EIS+R +DTI+K+FLDP   HLL C++  E YYL   S +PK L K  G ++ AV ++  + TE S
Sbjct:   93 VEISRRMDDTIYKLFLDPAARHLLICMNSQELYYLARNSKKPKPLTKLRGHLINAVGWNKTKLTEAS 159
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: A0A3M6T9G8_POCDA (Vacuolar protein sorting-associated protein 18 homolog n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T9G8_POCDA)

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-11
Identity = 27/67 (40.30%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTEVS 201
            ++I+KR +D++H+IF+DPT  HL+ C+   E++YL   S +PK L K  G ++ A+A++  + TE S
Sbjct:   91 VDITKRMDDSVHRIFMDPTARHLIVCMKSQESFYLARNSKKPKPLAKMKGHLINAIAWNKSKLTESS 157
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BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Match: A0A7S3GZI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZI2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.050e-11
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   25 DTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSGVVVEAVAFDSQRCTE 195
            D+I ++F+DPT NH++  +   + YYLHS S RPK+L +  GV+ E +AFD   CTE
Sbjct:   24 DSIERVFIDPTANHVIIAMKSTDNYYLHSRSQRPKKLSRLQGVI-ECIAFDRHNCTE 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77582.15439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI30_ECTSI1.560e-3689.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH0_9PHAE2.000e-3389.55Pep3_Vps18 domain-containing protein n=1 Tax=Ectoc... [more]
A0A6P8H1B0_ACTTE1.810e-1246.27Vacuolar protein sorting-associated protein 18 hom... [more]
D3BPC0_POLPP4.610e-1245.317-fold repeat in clathrin and VPS proteins repeat-... [more]
UPI0009E261021.170e-1141.79vacuolar protein sorting-associated protein 18 hom... [more]
A0A6S7HQQ7_PARCT1.170e-1144.78Vacuolar protein sorting-associated protein 18 hom... [more]
A7RKZ9_NEMVE1.170e-1143.28Vacuolar protein sorting-associated protein 18 hom... [more]
UPI000A2A96A11.170e-1146.27vacuolar protein sorting-associated protein 18 hom... [more]
A0A3M6T9G8_POCDA1.600e-1140.30Vacuolar protein sorting-associated protein 18 hom... [more]
A0A7S3GZI2_9STRA3.050e-1147.37Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77582contigH-elongata_contig77582:2543..2764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.1e-28
Seed eggNOG ortholog2880.D8LI30
Preferred nameVPS18
KEGG koko:K11303,ko:K20181
KEGG Pathwayko04138,ko05034,map04138,map05034
GOsGO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0001845,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006906,GO:0006909,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043277,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048284,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051036,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061024,GO:0061025,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090174,GO:0090382,GO:0090385,GO:0090386,GO:0090387,GO:0090389,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.notochord cell vacuolation
EggNOG OGsKOG2034@1,KOG2034@2759
EC2.3.1.48
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.44533-CDS-H-elongata_contig77582:2542..27641622931181.44533-CDS-H-elongata_contig77582:2542..2764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77582 2543..2764 +
1691679731.602921-CDS-H-elongata_contig77582:2542..27641691679731.602921-CDS-H-elongata_contig77582:2542..2764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77582 2543..2764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77582.15439.1prot_H-elongata_contig77582.15439.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77582 2543..2764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77582.15439.1

>prot_H-elongata_contig77582.15439.1 ID=prot_H-elongata_contig77582.15439.1|Name=mRNA_H-elongata_contig77582.15439.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
LEISKRPEDTIHKIFLDPTGNHLLACLHGGETYYLHSTSARPKRLLKWSG
VVVEAVAFDSQRCTEVSGGDGLY*
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mRNA from alignment at H-elongata_contig77582:2543..2764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77582.15439.1 ID=mRNA_H-elongata_contig77582.15439.1|Name=mRNA_H-elongata_contig77582.15439.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig77582:2543..2764+ (Himanthalia elongata Himel1 dioecious)
TTGGAGATATCTAAGCGGCCGGAGGACACGATCCACAAGATTTTCCTAGA
CCCGACAGGAAATCACCTCCTGGCTTGCCTGCACGGCGGGGAGACATACT
ACCTCCACTCAACCTCCGCTAGGCCCAAGCGGCTGCTGAAGTGGTCAGGA
GTCGTGGTCGAGGCGGTGGCGTTCGACTCGCAGCGGTGCACCGAGGTCAG
CGGGGGTGACGGTTTATACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig77582:2543..2764+

>mRNA_H-elongata_contig77582.15439.1 ID=mRNA_H-elongata_contig77582.15439.1|Name=mRNA_H-elongata_contig77582.15439.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig77582:2543..2764+ (Himanthalia elongata Himel1 dioecious)
TTGGAGATATCTAAGCGGCCGGAGGACACGATCCACAAGATTTTCCTAGA
CCCGACAGGAAATCACCTCCTGGCTTGCCTGCACGGCGGGGAGACATACT
ACCTCCACTCAACCTCCGCTAGGCCCAAGCGGCTGCTGAAGTGGTCAGGA
GTCGTGGTCGAGGCGGTGGCGTTCGACTCGCAGCGGTGCACCGAGGTCAG
CGGGGGTGACGGTTTATACTGATTGGAGATATCTAAGCGGCCGGAGGACA
CGATCCACAAGATTTTCCTAGACCCGACAGGAAATCACCTCCTGGCTTGC
CTGCACGGCGGGGAGACATACTACCTCCACTCAACCTCCGCTAGGCCCAA
GCGGCTGCTGAAGTGGTCAGGAGTCGTGGTCGAGGCGGTGGCGTTCGACT
CGCAGCGGTGCACCGAGGTCAGCGGGGGTGACGGTTTATACTGA
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