prot_H-elongata_contig77580.15438.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig77580.15438.1
Unique Name	prot_H-elongata_contig77580.15438.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	161

Homology

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: A0A1L2F1Q1_9PHAE (Cytochrome b6-f complex subunit 4 n=58 Tax=Stramenopiles TaxID=33634 RepID=A0A1L2F1Q1_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 3.310e-112
Identity = 154/160 (96.25%), Postives = 159/160 (99.38%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFV+VIGLAVMEPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVP GLITVPFIENVNKFQNPFRRPVASTVFLIGTF+AIWLGIGACLPI+KA+TLGLF
Sbjct:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPAGLITVPFIENVNKFQNPFRRPVASTVFLIGTFIAIWLGIGACLPINKALTLGLF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: B2XTC2_HETAK (Cytochrome b6-f complex subunit 4 n=4 Tax=Ochrophyta TaxID=2696291 RepID=B2XTC2_HETAK)

HSP 1 Score: 299 bits (766), Expect = 1.900e-102
Identity = 138/160 (86.25%), Postives = 153/160 (95.62%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MS++KKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGTF +V GLAV+EPSALGE ANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVL+MA+VP+GLITVPFIEN+NKFQNPFRRP+ASTVFL GT VAIWLGIGACLPI++A+TLGLF
Sbjct:    1 MSVIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTFSIVTGLAVLEPSALGEPANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLSMAAVPLGLITVPFIENINKFQNPFRRPIASTVFLFGTVVAIWLGIGACLPINQAVTLGLF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: A0A7U0KT28_OLILU (Cytochrome b6-f complex subunit 4 n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KT28_OLILU)

HSP 1 Score: 297 bits (761), Expect = 1.100e-101
Identity = 136/160 (85.00%), Postives = 153/160 (95.62%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MSI+KKPDL+DPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+CILGTF ++IGLA++EPSALGEKA+PFATPLEILPEWYFFPTFN+LRVLPNKLLGVLAMA+VP GLITVPFIENVNKFQNPFRRP+AS VFL+GT +AIWLGIGA +PI KA+TLGLF
Sbjct:    1 MSIIKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVCILGTFSILIGLAILEPSALGEKADPFATPLEILPEWYFFPTFNILRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPIASIVFLLGTVIAIWLGIGATMPIDKALTLGLF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: A0A516ZA44_9STRA (Cytochrome b6-f complex subunit 4 n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA44_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.500e-99
Identity = 135/160 (84.38%), Postives = 148/160 (92.50%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MS++KKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGTF ++IGLAV+EPSALGEKA+PFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMA+VP GLITVPFIENVNKFQNPFRRP+A  VFL GT  AIW GIGACLPI  A+TLGLF
Sbjct:    1 MSVIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTFAILIGLAVLEPSALGEKADPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLITVPFIENVNKFQNPFRRPLAMAVFLFGTAFAIWFGIGACLPIKDAVTLGLF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: A0A0D3M5D2_9STRA (Cytochrome b6-f complex subunit 4 n=17 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A0D3M5D2_9STRA)

HSP 1 Score: 290 bits (742), Expect = 8.690e-99
Identity = 132/160 (82.50%), Postives = 149/160 (93.12%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MS++KKPDLT+P LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGTF LVIGL+ +EPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMA+VP GL+TVPFIEN+N FQNPFRRP+AS +FLIGT  AIW GIGAC+PISKA+TLGLF
Sbjct:    1 MSVIKKPDLTNPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTFALVIGLSTLEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLLTVPFIENINTFQNPFRRPIASFMFLIGTVFAIWFGIGACMPISKAVTLGLF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: A0A1X9PVG8_9RHOD (Cytochrome b6-f complex subunit 4 n=1 Tax=Bulboplastis apyrenoidosa TaxID=1070855 RepID=A0A1X9PVG8_9RHOD)

HSP 1 Score: 289 bits (740), Expect = 1.750e-98
Identity = 133/160 (83.12%), Postives = 147/160 (91.88%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MS+LKKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ YMFP+CILGT    +GLAVMEPSALGE +NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GLITVPF+ENVNKFQNPFRRP+A  V+L GT  +IWLGIGA LPI+KA+TLGLF
Sbjct:    1 MSVLKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYMFPVCILGTIACCVGLAVMEPSALGEPSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLITVPFLENVNKFQNPFRRPLAMAVYLTGTVTSIWLGIGATLPINKALTLGLF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: M5DER2_CHOCR (Cytochrome b6-f complex subunit 4 n=2 Tax=Gigartinaceae TaxID=29217 RepID=M5DER2_CHOCR)

HSP 1 Score: 288 bits (736), Expect = 7.140e-98
Identity = 129/160 (80.62%), Postives = 151/160 (94.38%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MSI+KKPDLTDPKLRAKLAKGMGH+YYGEPAWPNDIFYMFP+ IL T    +GL+++EPS LGEKANPFATPLEILPEWYFFPTFNLLRV+PNKL+GVL+MASVP GLIT+PF+E++NKFQNPFRRP+A++VFLIGTFV+IWLGIGA +P+SKA+TLG+F
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDIFYMFPVVILATIACDVGLSILEPSVLGEKANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPFGLITIPFVESINKFQNPFRRPIATSVFLIGTFVSIWLGIGATMPLSKALTLGVF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: A0A1C9C7T5_RHOPU (Cytochrome b6-f complex subunit 4 n=54 Tax=Florideophyceae TaxID=2806 RepID=A0A1C9C7T5_RHOPU)

HSP 1 Score: 287 bits (735), Expect = 1.010e-97
Identity = 130/160 (81.25%), Postives = 150/160 (93.75%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MSI+KKPDLTDPKLRAKLAKGMGH+YYGEPAWPND+ YMFP+ ILGT    +GL+++EPS +GE ANPFATPLEILPEWYFFPTFNLLRV+PNKL+GVL+MASVP GLITVPFIE++NKFQNPFRRP+A+TVFLIGTF++IWLGIGA +P+SKAITLGLF
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPVVILGTIACDVGLSILEPSVIGEIANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPAGLITVPFIESINKFQNPFRRPIATTVFLIGTFISIWLGIGATMPLSKAITLGLF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: PETD_EMIHU (Cytochrome b6-f complex subunit 4 n=13 Tax=cellular organisms TaxID=131567 RepID=PETD_EMIHU)

HSP 1 Score: 287 bits (734), Expect = 1.440e-97
Identity = 132/160 (82.50%), Postives = 146/160 (91.25%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MSILKKPDL DPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+CILGT    IGL V+EP+ LGEKA+PFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP+GLITVPFIENVNKFQNPFRRPVAS VFL GTF A WLGIGA +PI++A+TLG F
Sbjct:    1 MSILKKPDLADPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVCILGTIACCIGLGVLEPTPLGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPIGLITVPFIENVNKFQNPFRRPVASLVFLFGTFTAFWLGIGATMPITQALTLGFF 160

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BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Match: PETD_PORPU (Cytochrome b6-f complex subunit 4 n=14 Tax=Bangiaceae TaxID=31345 RepID=PETD_PORPU)

HSP 1 Score: 286 bits (733), Expect = 2.050e-97
Identity = 131/160 (81.88%), Postives = 148/160 (92.50%), Query Frame = 0

Query:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVLVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLPISKAITLGLF 160
            MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    IGLA++EPS+LGEK+NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GL+TVPFIENVNKFQNPFRRP+A+T+FLI T + IWLGIGA +PI+ AITLGLF
Sbjct:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYVFPVVILGTIACSIGLAILEPSSLGEKSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLLTVPFIENVNKFQNPFRRPIATTIFLISTVITIWLGIGATMPINNAITLGLF 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot

BLAST of mRNA_H-elongata_contig77580.15438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1Q1_9PHAE	3.310e-112	96.25	Cytochrome b6-f complex subunit 4 n=58 Tax=Stramen...	[more]
B2XTC2_HETAK	1.900e-102	86.25	Cytochrome b6-f complex subunit 4 n=4 Tax=Ochrophy...	[more]
A0A7U0KT28_OLILU	1.100e-101	85.00	Cytochrome b6-f complex subunit 4 n=1 Tax=Olisthod...	[more]
A0A516ZA44_9STRA	1.500e-99	84.38	Cytochrome b6-f complex subunit 4 n=2 Tax=Dictyoch...	[more]
A0A0D3M5D2_9STRA	8.690e-99	82.50	Cytochrome b6-f complex subunit 4 n=17 Tax=Eustigm...	[more]
A0A1X9PVG8_9RHOD	1.750e-98	83.13	Cytochrome b6-f complex subunit 4 n=1 Tax=Bulbopla...	[more]
M5DER2_CHOCR	7.140e-98	80.63	Cytochrome b6-f complex subunit 4 n=2 Tax=Gigartin...	[more]
A0A1C9C7T5_RHOPU	1.010e-97	81.25	Cytochrome b6-f complex subunit 4 n=54 Tax=Floride...	[more]
PETD_EMIHU	1.440e-97	82.50	Cytochrome b6-f complex subunit 4 n=13 Tax=cellula...	[more]
PETD_PORPU	2.050e-97	81.88	Cytochrome b6-f complex subunit 4 n=14 Tax=Bangiac...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005870	Cytochrome b6/f complex, subunit IV	TIGRFAM	TIGR01156	TIGR01156	coord: 1..160 e-value: 1.6E-91 score: 302.3
IPR005870	Cytochrome b6/f complex, subunit IV	PIRSF	PIRSF000033	Cytochrome_b6f_IV	coord: 1..160 e-value: 4.8E-95 score: 313.6
IPR005870	Cytochrome b6/f complex, subunit IV	HAMAP	MF_01344	Cytb6_f_subIV	coord: 1..160 score: 44.426
IPR005798	Cytochrome b/b6, C-terminal	PFAM	PF00032	Cytochrom_B_C	coord: 65..154 e-value: 2.7E-18 score: 66.1
IPR005798	Cytochrome b/b6, C-terminal	PROSITE	PS51003	CYTB_CTER	coord: 66..160 score: 15.284
None	No IPR available	GENE3D	1.10.287.980		coord: 67..160 e-value: 1.2E-35 score: 123.6
None	No IPR available	GENE3D	1.20.5.510		coord: 9..66 e-value: 3.7E-33 score: 115.0
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 45..160
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 4..36
None	No IPR available	PANTHER	PTHR19271:SF16		coord: 4..36
None	No IPR available	PANTHER	PTHR19271:SF16		coord: 45..160
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..94
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 152..160
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 95..114
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 36..57
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 129..151
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 115..128
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..35
None	No IPR available	TMHMM	TMhelix		coord: 129..151
None	No IPR available	TMHMM	TMhelix		coord: 35..57
None	No IPR available	TMHMM	TMhelix		coord: 95..114
IPR036150	Cytochrome b/b6, C-terminal domain superfamily	SUPERFAMILY	81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 2..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig77580	contig	H-elongata_contig77580:2208..2690 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig77580.15438.1	mRNA_H-elongata_contig77580.15438.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig77580 2208..2690 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig77580.15438.1 ID=prot_H-elongata_contig77580.15438.1|Name=mRNA_H-elongata_contig77580.15438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVL
VIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLA
MASVPVGLITVPFIENVNKFQNPFRRPVASTVFLIGTFVAIWLGIGACLP
ISKAITLGLF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005870	Cyt_b6/f_cplx_suIV
IPR005798	Cyt_b/b6_C
IPR036150	Cyt_b/b6_C_sf