mRNA_H-elongata_contig77538.15435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77538.15435.1
Unique NamemRNA_H-elongata_contig77538.15435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77538.15435.1 vs. uniprot
Match: A0A6H5JIG0_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG0_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 5.340e-49
Identity = 110/228 (48.25%), Postives = 129/228 (56.58%), Query Frame = 1 
Query:    1 QVWSICRRQHDFQKLHACLQRQFPAITLPRLPRPPSGGG--LLDPATLERTRAGLQSYAAGLVADVPAAWGLEEFVMFLDSDEKGRRLFGKKRKKDARKVMGRSSASEEQRSKLSRGTRERCFESEGDCSRGPGEEE-------HKVGTLPSFRIRPVC-LPRVEL--QTLLDVKVEEKKQAMAALEGAAQNHFEGVGAVVNNEVSFSDDEDFG----FDDDGEFIDG 636
            QVWS+CRR  DFQ LH+CLQ  FPA+ LPRLPRPP+GGG   L+PATLER RAGLQ+YAA +V  VPAAWGLEE VMFLDS+EKGRRLF                                                        K    P   + P    P V    ++LLD+KVEEKK A+AALEGAA NHF+GVGAV+N  VSFS+D D G    F ++ +FIDG
Sbjct:   40 QVWSVCRRYKDFQSLHSCLQATFPALVLPRLPRPPTGGGGMALEPATLERARAGLQAYAAAVVGSVPAAWGLEELVMFLDSEEKGRRLFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKPVARKGAAFPPDLVSPKTGTPGVGFGQKSLLDLKVEEKKLALAALEGAAANHFDGVGAVMNAAVSFSEDSDDGASQEFGEESDFIDG 267
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BLAST of mRNA_H-elongata_contig77538.15435.1 vs. uniprot
Match: D7FV50_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV50_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.310e-45
Identity = 109/227 (48.02%), Postives = 128/227 (56.39%), Query Frame = 1 
Query:    1 QVWSICRRQHDFQKLHACLQRQFPAITLPRLPRPPSGGG--LLDPATLERTRAGLQSYAAGLVADVPAAWGLEEFVMFLDSDEKGRRLFGKKRKKDARKVMGRSSASEEQRSKLSRGTRERCFESEGDCSRGPGEEE------HKVGTLPSFRIRPVC-LPRVEL--QTLLDVKVEEKKQAMAALEGAAQNHFEGVGAVVNNEVSFSDDEDFG----FDDDGEFIDG 636
            QVWS+CRR  DFQ LH+CLQ  FPA+ LPRLPRPP+GGG   L+PATLER RAGLQ+YAA +V  VPAAWGLEE VMFLDS+EKGRRLF                                                       K    P   + P    P V    ++LLD+KVEEKK A+AALEGAA NHF+GVGAV+N  VSFS+D D      F ++ +FIDG
Sbjct:  508 QVWSVCRRYKDFQSLHSCLQATFPALVLPRLPRPPTGGGGMALEPATLERARAGLQAYAAAVVGSVPAAWGLEELVMFLDSEEKGRRLFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKPVARKAAAFPPDLVSPKAGTPGVGFGQKSLLDLKVEEKKLALAALEGAAANHFDGVGAVMNAAVSFSEDSDDDASQEFGEESDFIDG 734
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77538.15435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIG0_9PHAE5.340e-4948.25PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FV50_ECTSI1.310e-4548.02PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77538contigH-elongata_contig77538:258..1340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-12_005160.1
Hectar predicted targeting categoryother localisation
Exons3
Model size645
Cds size645
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77538.15435.1prot_H-elongata_contig77538.15435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77538 258..1340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.1928601-CDS-H-elongata_contig77538:257..5471622931181.1928601-CDS-H-elongata_contig77538:257..547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77538 258..547 +
1691679731.4902513-CDS-H-elongata_contig77538:257..5471691679731.4902513-CDS-H-elongata_contig77538:257..547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77538 258..547 +
1622931181.205381-CDS-H-elongata_contig77538:806..9471622931181.205381-CDS-H-elongata_contig77538:806..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77538 807..947 +
1691679731.5096097-CDS-H-elongata_contig77538:806..9471691679731.5096097-CDS-H-elongata_contig77538:806..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77538 807..947 +
1622931181.2243917-CDS-H-elongata_contig77538:1126..13401622931181.2243917-CDS-H-elongata_contig77538:1126..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77538 1127..1340 +
1691679731.5202408-CDS-H-elongata_contig77538:1126..13401691679731.5202408-CDS-H-elongata_contig77538:1126..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77538 1127..1340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77538.15435.1

>prot_H-elongata_contig77538.15435.1 ID=prot_H-elongata_contig77538.15435.1|Name=mRNA_H-elongata_contig77538.15435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
QVWSICRRQHDFQKLHACLQRQFPAITLPRLPRPPSGGGLLDPATLERTR
AGLQSYAAGLVADVPAAWGLEEFVMFLDSDEKGRRLFGKKRKKDARKVMG
RSSASEEQRSKLSRGTRERCFESEGDCSRGPGEEEHKVGTLPSFRIRPVC
LPRVELQTLLDVKVEEKKQAMAALEGAAQNHFEGVGAVVNNEVSFSDDED
FGFDDDGEFIDGGK*
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mRNA from alignment at H-elongata_contig77538:258..1340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77538.15435.1 ID=mRNA_H-elongata_contig77538.15435.1|Name=mRNA_H-elongata_contig77538.15435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig77538:258..1340+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTGGTCGATTTGCCGACGTCAGCACGACTTTCAAAAGCTCCATGC
GTGCCTCCAAAGGCAGTTTCCGGCCATCACTTTACCGCGACTTCCCCGGC
CCCCGTCTGGAGGTGGCTTACTGGATCCCGCAACGCTGGAGAGAACGAGA
GCGGGCCTTCAGTCTTACGCGGCGGGCCTCGTCGCGGACGTGCCCGCCGC
TTGGGGCCTGGAGGAGTTCGTAATGTTTTTGGATTCTGATGAGAAGGGGA
GGAGACTGTTTGGCAAGAAGAGAAAGAAAGATGCTCGCAAGTGAGTGATT
GTAAGGAAATCCGACGCTTGATTCGATTGGAGTCGTGAGTGCTTAGTCGT
GGAAATGTTTATAGACCCGTGGTGCAGCTCTCTCCCTAAGCAATCAATCG
TCGCATATTAGTTCCACGAAACGAGCAACGACAAACATCGGCGGTTCGGC
CATTAAATCAGTCGCCAAACAAAATACCAACTGCCGGAAGGGACTTCCTT
ATCTTTTCAAAAAAGCTGAACTATTGAACGTTCTCTGTAACCCTTCCAGG
GTTATGGGACGGTCATCCGCGTCGGAGGAGCAGCGATCGAAGTTGAGCCG
TGGCACAAGGGAGAGGTGTTTCGAGTCGGAGGGGGATTGTTCGCGTGGCC
CGGGGGAAGAAGAGCACAAGGTGGGGACGTTACCTAGTTTGTTCTTCTGG
CAGTGTTCGGTAAGGTTGTCGTGCCGCAGGAGTCGATGCTTTTTATTTGG
CGGGATTACAAACGACGGTTGTTACGTTTGACCCCGGTGATGGCGCCAGG
GGTTTACTATCCTCACCGCTGGCGCAGGCGGTATGCTGTACAAGGTGACG
GTCTTTCTCAACTTATGAGTCGCATCCGCCCGGTGTGCTTGCCCCGCGTT
GAACTTCAGACATTGTTGGACGTGAAGGTTGAGGAGAAAAAGCAGGCCAT
GGCCGCGCTGGAGGGAGCCGCCCAAAATCATTTCGAAGGCGTCGGCGCAG
TAGTCAACAATGAGGTTTCCTTTTCCGACGATGAAGACTTCGGCTTCGAC
GATGACGGAGAGTTTATCGACGGAGGCAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig77538:258..1340+

>mRNA_H-elongata_contig77538.15435.1 ID=mRNA_H-elongata_contig77538.15435.1|Name=mRNA_H-elongata_contig77538.15435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig77538:258..1340+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTGGTCGATTTGCCGACGTCAGCACGACTTTCAAAAGCTCCATGC
GTGCCTCCAAAGGCAGTTTCCGGCCATCACTTTACCGCGACTTCCCCGGC
CCCCGTCTGGAGGTGGCTTACTGGATCCCGCAACGCTGGAGAGAACGAGA
GCGGGCCTTCAGTCTTACGCGGCGGGCCTCGTCGCGGACGTGCCCGCCGC
TTGGGGCCTGGAGGAGTTCGTAATGTTTTTGGATTCTGATGAGAAGGGGA
GGAGACTGTTTGGCAAGAAGAGAAAGAAAGATGCTCGCAACAGGTGTGGT
CGATTTGCCGACGTCAGCACGACTTTCAAAAGCTCCATGCGTGCCTCCAA
AGGCAGTTTCCGGCCATCACTTTACCGCGACTTCCCCGGCCCCCGTCTGG
AGGTGGCTTACTGGATCCCGCAACGCTGGAGAGAACGAGAGCGGGCCTTC
AGTCTTACGCGGCGGGCCTCGTCGCGGACGTGCCCGCCGCTTGGGGCCTG
GAGGAGTTCGTAATGTTTTTGGATTCTGATGAGAAGGGGAGGAGACTGTT
TGGCAAGAAGAGAAAGAAAGATGCTCGCAAGGTTATGGGACGGTCATCCG
CGTCGGAGGAGCAGCGATCGAAGTTGAGCCGTGGCACAAGGGAGAGGTGT
TTCGAGTCGGAGGGGGATTGTTCGCGTGGCCCGGGGGAAGAAGAGCACAA
GGTGGGGACGTTACCTAGTTTGGTTATGGGACGGTCATCCGCGTCGGAGG
AGCAGCGATCGAAGTTGAGCCGTGGCACAAGGGAGAGGTGTTTCGAGTCG
GAGGGGGATTGTTCGCGTGGCCCGGGGGAAGAAGAGCACAAGGTGGGGAC
GTTACCTAGTTTTCGCATCCGCCCGGTGTGCTTGCCCCGCGTTGAACTTC
AGACATTGTTGGACGTGAAGGTTGAGGAGAAAAAGCAGGCCATGGCCGCG
CTGGAGGGAGCCGCCCAAAATCATTTCGAAGGCGTCGGCGCAGTAGTCAA
CAATGAGGTTTCCTTTTCCGACGATGAAGACTTCGGCTTCGACGATGACG
GAGAGTTTATCGACGGAGGCAAGTAATCGCATCCGCCCGGTGTGCTTGCC
CCGCGTTGAACTTCAGACATTGTTGGACGTGAAGGTTGAGGAGAAAAAGC
AGGCCATGGCCGCGCTGGAGGGAGCCGCCCAAAATCATTTCGAAGGCGTC
GGCGCAGTAGTCAACAATGAGGTTTCCTTTTCCGACGATGAAGACTTCGG
CTTCGACGATGACGGAGAGTTTATCGACGGAGGCAAGTAA
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