mRNA_H-elongata_contig77529.15434.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77529.15434.1
Unique NamemRNA_H-elongata_contig77529.15434.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.720e-26
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 2 
Query:  224 GWWRATPVIQQLDRTINKEFKRGIRGEFTVWVRDEF-ESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQ 535
            GW   TP++Q LDR +NK+ KR +RG++T +      ++   ++K P R +V+ W K  WE IT  T+++CFK+C LTL LDGSEDHAWC   FG++ R++L EQ
Sbjct:   72 GW---TPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQ 173
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5JAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.300e-26
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 2 
Query:  143 GA*RVQMPQGRGVPGQVKATCKAGHGDGWWRATPVIQQLDRTINKEFKRGIRGEFTVWVRDEF-ESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQ 535
            G  RV  P  R  P    ++ +AG        T ++Q LDR +NK+ KR +RG++T +      ++   ++K P RE+V+ W K  WE IT  T+++CFK+C LTL LDGSEDHAWC   FG++ R++L EQ
Sbjct:  316 GGTRVSSPPSRETPTPSSSSSQAG-------LTFLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPEREVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQ 440
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5K0T0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 7.200e-26
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:  239 TPVIQQLDRTINKEFKRGIRGEFTVWVRDEF-ESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQ 535
            TP++Q LDR +NK+ KR +RG++T +      ++   ++K P R +V+ W K  WE IT  T+++CFK+C LTL LDG EDHAWC   FG+N R++L EQ
Sbjct:   30 TPLLQALDRMLNKQMKRLLRGKYTAYSASAVADALSGKLKPPERGVVSTWCKEAWESITPKTVKTCFKICGLTLALDGREDHAWCEHNFGENCRDLLDEQ 129
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.940e-25
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 2 
Query:  239 TPVIQQLDRTINKEFKRGIRGEFTVWVRDEFESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQ 535
            TP++Q LDR +NK+ KR +R ++T +     ++   ++K P R +V+ W K  WE IT  T+++CFK+C LTL LDGSEDHAWC   FG++ R++L EQ
Sbjct:  224 TPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQ 322
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.400e-25
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 2 
Query:  239 TPVIQQLDRTINKEFKRGIRGEFTVWVRDEF-ESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQ 535
            TP++Q LDR +NK+ KR +RG++T +      ++   ++K P R +V+ W K  WE IT  T++SCFK+C LTL LDGSEDHAWC   FG+++ ++L EQ
Sbjct:  171 TPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFGEDSHDLLEEQ 270
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5JTI5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.130e-24
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 2 
Query:  239 TPVIQQLDRTINKEFKRGIRGEFTVWVRDE-FESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVE 532
            TP++Q LDR +NK+ KR + G++T +      ++   ++K P R +V+ W K  WE I   T+++CFK+C LTL LDG EDHAWC   FG+++R++L E
Sbjct:   74 TPLVQPLDRMLNKQMKRLLWGKYTAYSASAVIDARSGKLKPPERGVVSTWCKEAWESINPETVKTCFKICGLTLALDGGEDHAWCQHNFGEDHRDLLEE 172
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.720e-23
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  239 TPVIQQLDRTINKEFKRGIRGEFTVWVRDEF-ESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQ 535
            TP+   LDR +NK+ KR +RG++T +      ++   ++K P R +V+ W K  WE IT  T+++CFK+C LTL LDGSEDHAWC   FG++ R++L EQ
Sbjct:  464 TPLFHPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQ 563
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.140e-23
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  239 TPVIQQLDRTINKEFKRGIRGEFTVWVRDEF-ESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQ 535
            T ++Q LDR +NK+ KR +RG++T +      ++   ++K P R +V+ W K  WE IT  T+++CF +C LTL LDGSEDHAWC   FG++ R++L EQ
Sbjct:  151 TLLLQPLDRLLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCFMICRLTLALDGSEDHAWCEHNFGEDYRDLLGEQ 250
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.090e-22
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 2 
Query:  239 TPVIQQLDRTINKEFKRGIRGEFTVWV-RDEFESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQQ 538
            TP++Q LDR +NK+ KR +RG +T    +   + +  ++  P R  VA W KN W  IT  T+++CFK+C LTL LDGSEDHAWC   FGD  RE+L +Q+
Sbjct:  403 TPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQR 503
[Close]
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.650e-22
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 2 
Query:  233 RATPVIQQLDRTINKEFKRGIRGEFTVWVRDEF-ESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLNLDGSEDHAWCTRTFGDNNREVLVEQQ 538
            R TP++Q LDR +NK+ KR +R ++T +      ++   ++K P R +V+ W K  WE  T  T+++CF +C LTL LDGSEDHAWC   FG++ R++L EQ+
Sbjct:  288 RLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQR 390
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77529.15434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBJ7_9PHAE2.720e-2646.67DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JAU0_9PHAE4.300e-2641.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T0_9PHAE7.200e-2647.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE2.940e-2546.46DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE3.400e-2547.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTI5_9PHAE2.130e-2443.43DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JN68_9PHAE2.720e-2346.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE4.140e-2345.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.090e-2247.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.650e-2243.69DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77529contigH-elongata_contig77529:1453..2448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.9
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog588596.U9UU98
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs38I47@33154,3P9QG@4751,KOG3105@1,KOG3105@2759
COG Functional cat.BD
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size860
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77529.15434.1prot_H-elongata_contig77529.15434.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77529 1613..2294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.0874665-UTR-H-elongata_contig77529:1452..16121622931181.0874665-UTR-H-elongata_contig77529:1452..1612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77529 1453..1612 +
1691679731.4508212-UTR-H-elongata_contig77529:1452..16121691679731.4508212-UTR-H-elongata_contig77529:1452..1612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77529 1453..1612 +
1622931181.1373312-UTR-H-elongata_contig77529:2294..24481622931181.1373312-UTR-H-elongata_contig77529:2294..2448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77529 2295..2448 +
1691679731.4803767-UTR-H-elongata_contig77529:2294..24481691679731.4803767-UTR-H-elongata_contig77529:2294..2448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77529 2295..2448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.1033947-CDS-H-elongata_contig77529:1612..19881622931181.1033947-CDS-H-elongata_contig77529:1612..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77529 1613..1988 +
1691679731.4612103-CDS-H-elongata_contig77529:1612..19881691679731.4612103-CDS-H-elongata_contig77529:1612..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77529 1613..1988 +
1622931181.1215446-CDS-H-elongata_contig77529:2124..22941622931181.1215446-CDS-H-elongata_contig77529:2124..2294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77529 2125..2294 +
1691679731.4706838-CDS-H-elongata_contig77529:2124..22941691679731.4706838-CDS-H-elongata_contig77529:2124..2294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77529 2125..2294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77529.15434.1

>prot_H-elongata_contig77529.15434.1 ID=prot_H-elongata_contig77529.15434.1|Name=mRNA_H-elongata_contig77529.15434.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MPQGRGVPGQVKATCKAGHGDGWWRATPVIQQLDRTINKEFKRGIRGEFT
VWVRDEFESEGNRIKAPSREIVAKWVKNIWEGITAMTIRSCFKVCDLTLN
LDGSEDHAWCTRTFGDNNREVLVEQQHLCPRTLSTTQTRKKASRMISLTW
NRRRKWVQRTNCRLGERKRQRARLERTLTQL*
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mRNA from alignment at H-elongata_contig77529:1453..2448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77529.15434.1 ID=mRNA_H-elongata_contig77529.15434.1|Name=mRNA_H-elongata_contig77529.15434.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at H-elongata_contig77529:1453..2448+ (Himanthalia elongata Himel1 dioecious)
GTTTCGGCTACCCAGTGGGCGGCATCAGCCTCGGGATGCAAAACGCTTCG
TGGTGTGGCATCGTCCAAAGTGATCGGTGGGTAACGGAGGACTTCATGCG
CCGCCTACGTACTACCACTTTCAGCCAGACTCGCAGCATTTTGGTGCTTG
ACGAGTTCAAATGCCTCAAGGACGCGGCGTTCCGGGACAAGTTAAAGCAA
CATGCAAAGCAGGACACGGTGATGGTTGGTGGAGGGCCACGCCGGTAATC
CAGCAGCTGGACCGGACCATCAACAAGGAGTTCAAGCGCGGGATACGGGG
AGAATTCACCGTCTGGGTTCGGGACGAGTTCGAGAGTGAGGGGAACCGCA
TCAAAGCACCGAGCAGGGAGATCGTGGCAAAATGGGTGAAGAACATTTGG
GAGGGCATCACGGCGATGACCATCCGCTCGTGCTTCAAGGTCTGCGACCT
CACTCTCAACCTCGATGGCAGCGAGGACCACGCGTGGTGCACCCGCACGT
TCGGTGACAACAACCGCGAGGTATTGGTCGAGCAGCGCGAGGCAAGGGAG
ACGGTGCATGGGATCGAACTGGAACCCCTCCAGCTGCCGGTTATCCCTAA
GGAGCACGGCGCCCAGGGGAACGCCGCGGATCCAATCGACAGGGTAGCAC
AGGGAGCTAAGCACCTCGAAAGAACACTTATGCCCAAGGACCCTATCTAC
GACTCAGACGAGGAAGAAGGCATCCCGGATGATATCATTGACTTGGAATC
GGAGGAGGAAGTGGGTGCAGAGGACGAACTGTAGGTTAGGGGAGAGGAAG
AGGCAACGGGCGAGATTAGAACGGACGTTGACCCAGTTGTGATTCGTTTT
GTTTTTTCGTGGCGTGGATGATTAATTGTTCTTTTGTTGTAGGACAAGCT
GGTCGATGATTGCTGTCATTCATTTGGGCGTACTGCTTTTCCGCGTGTAT
TTGTGTGCGTCATTAGTGTGGAACTTCCTGTTTATTTTTCTTTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig77529:1453..2448+

>mRNA_H-elongata_contig77529.15434.1 ID=mRNA_H-elongata_contig77529.15434.1|Name=mRNA_H-elongata_contig77529.15434.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig77529:1453..2448+ (Himanthalia elongata Himel1 dioecious)
ATGCCTCAAGGACGCGGCGTTCCGGGACAAGTTAAAGCAACATGCAAAGC
AGGACACGGTGATGGTTGGTGGAGGGCCACGCCGGTAATCCAGCAGCTGG
ACCGGACCATCAACAAGGAGTTCAAGCGCGGGATACGGGGAGAATTCACC
GTCTGGGTTCGGGACGAGTTCGAGAGTGAGGGGAACCGCATCAAAGCACC
GAGCAGGGAGATCGTGGCAAAATGGGTGAAGAACATTTGGGAGGGCATCA
CGGCGATGACCATCCGCTCGTGCTTCAAGGTCTGCGACCTCACTCTCAAC
CTCGATGGCAGCGAGGACCACGCGTGGTGCACCCGCACGTTCGGTGACAA
CAACCGCGAGGTATTGGTCGAGCAGCATGCCTCAAGGACGCGGCGTTCCG
GGACAAGTTAAAGCAACATGCAAAGCAGGACACGGTGATGGTTGGTGGAG
GGCCACGCCGGTAATCCAGCAGCTGGACCGGACCATCAACAAGGAGTTCA
AGCGCGGGATACGGGGAGAATTCACCGTCTGGGTTCGGGACGAGTTCGAG
AGTGAGGGGAACCGCATCAAAGCACCGAGCAGGGAGATCGTGGCAAAATG
GGTGAAGAACATTTGGGAGGGCATCACGGCGATGACCATCCGCTCGTGCT
TCAAGGTCTGCGACCTCACTCTCAACCTCGATGGCAGCGAGGACCACGCG
TGGTGCACCCGCACGTTCGGTGACAACAACCGCGAGGTATTGGTCGAGCA
GCAACACTTATGCCCAAGGACCCTATCTACGACTCAGACGAGGAAGAAGG
CATCCCGGATGATATCATTGACTTGGAATCGGAGGAGGAAGTGGGTGCAG
AGGACGAACTGTAGGTTAGGGGAGAGGAAGAGGCAACGGGCGAGATTAGA
ACGGACGTTGACCCAGTTGTGAAACACTTATGCCCAAGGACCCTATCTAC
GACTCAGACGAGGAAGAAGGCATCCCGGATGATATCATTGACTTGGAATC
GGAGGAGGAAGTGGGTGCAGAGGACGAACTGTAGGTTAGGGGAGAGGAAG
AGGCAACGGGCGAGATTAGAACGGACGTTGACCCAGTTGTGA
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