mRNA_H-elongata_contig77485.15430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77485.15430.1
Unique NamemRNA_H-elongata_contig77485.15430.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: D7FMA2_ECTSI (Ribonucleoside-diphosphate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA2_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 3.510e-22
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 3 
Query:  129 VFPAKDGE-GETPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
             F  ++GE G  PSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVL+AQKV
Sbjct:  159 AFLLEEGERGGAPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKV 215
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BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: R1BN65_EMIHU (ATP-cone domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BN65_EMIHU)

HSP 1 Score: 79.7 bits (195), Expect = 4.370e-16
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:  147 GEGETPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKVR 299
            G+  T SMHV+KRDGRREPVMFDKITARI++LC+G D +YIDP +I  K R
Sbjct:   98 GKSHTTSMHVIKRDGRREPVMFDKITARIKKLCYGFDPKYIDPTVITIKAR 148
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BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: R1BTQ7_EMIHU (ATP-cone domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BTQ7_EMIHU)

HSP 1 Score: 74.7 bits (182), Expect = 2.000e-15
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 3 
Query:  168 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKVR 299
            MHV+KRDGRREPVMFDKITARI++LC+G D +YIDP +I  K R
Sbjct:    1 MHVIKRDGRREPVMFDKITARIKKLCYGFDPKYIDPTVITIKAR 44
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BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: A0A6U8K7B8_EMIHU (Ribonucleoside-diphosphate reductase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6U8K7B8_EMIHU)

HSP 1 Score: 77.4 bits (189), Expect = 1.770e-14
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:  159 TPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
            T SMHV+KRDGRREPVMFDKITARI++LC+G D +YIDP +I  KV
Sbjct:   11 TTSMHVIKRDGRREPVMFDKITARIKKLCYGFDPKYIDPTVITIKV 56
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BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: A0A835YSZ4_9STRA (Ribonucleoside-diphosphate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.560e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:  168 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
            MHVVKRDGR EP  FDKI  R+RRLC GLDER+IDPVL+AQKV
Sbjct:    1 MHVVKRDGRTEPASFDKIVTRVRRLCNGLDERHIDPVLVAQKV 43
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BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: A0A448YKA0_BRENA (Ribonucleoside-diphosphate reductase n=1 Tax=Brettanomyces naardenensis TaxID=13370 RepID=A0A448YKA0_BRENA)

HSP 1 Score: 73.6 bits (179), Expect = 3.990e-13
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:  168 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
            M+V KRDGRREPV FDKITARI RLC+GLDE++IDP+ +AQ+V
Sbjct:    1 MYVFKRDGRREPVRFDKITARISRLCYGLDEKHIDPIAVAQRV 43
[Close]
BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: K8Z7A2_NANGC (Ribonucleoside-diphosphate reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7A2_NANGC)

HSP 1 Score: 73.2 bits (178), Expect = 5.480e-13
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:  153 GETPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
            GE P MHVVKRDGRREPV FDKIT R+R LC GL+  Y+DP  +AQKV
Sbjct:  125 GEAPYMHVVKRDGRREPVAFDKITKRLRSLCKGLNTDYVDPGRVAQKV 172
[Close]
BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: A0A6H5KL69_9PHAE (ATP-cone domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL69_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.720e-12
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:  168 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
            M V+KRDGR+E V FDKITARI  LC+GLD  Y++P LIAQKV
Sbjct:    1 MFVIKRDGRKETVSFDKITARISHLCYGLDPTYVEPTLIAQKV 43
[Close]
BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: A0A1M3CVX6_9CHLA (Ribonucleoside-diphosphate reductase n=1 Tax=Chlamydiales bacterium 38-26 TaxID=1895743 RepID=A0A1M3CVX6_9CHLA)

HSP 1 Score: 71.6 bits (174), Expect = 1.880e-12
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 3 
Query:  168 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
            M+VVKRDGR+EPV FDKITARI++LC+GLD +++DPVL+A KV
Sbjct:    1 MYVVKRDGRKEPVQFDKITARIQKLCYGLDLKHVDPVLVALKV 43
[Close]
BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Match: A0A875S038_EENNA (Ribonucleoside-diphosphate reductase n=1 Tax=Eeniella nana TaxID=13502 RepID=A0A875S038_EENNA)

HSP 1 Score: 71.6 bits (174), Expect = 1.890e-12
Identity = 30/43 (69.77%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:  168 MHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKV 296
            M+V KRDGRREPV FDKITARI RLC+GLD++++DP+ +AQ+V
Sbjct:    1 MYVFKRDGRREPVRFDKITARISRLCYGLDDKHVDPISVAQRV 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77485.15430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMA2_ECTSI3.510e-2284.21Ribonucleoside-diphosphate reductase n=2 Tax=Ectoc... [more]
R1BN65_EMIHU4.370e-1668.63ATP-cone domain-containing protein n=1 Tax=Emilian... [more]
R1BTQ7_EMIHU2.000e-1572.73ATP-cone domain-containing protein n=1 Tax=Emilian... [more]
A0A6U8K7B8_EMIHU1.770e-1473.91Ribonucleoside-diphosphate reductase n=1 Tax=Emili... [more]
A0A835YSZ4_9STRA1.560e-1379.07Ribonucleoside-diphosphate reductase n=1 Tax=Tribo... [more]
A0A448YKA0_BRENA3.990e-1374.42Ribonucleoside-diphosphate reductase n=1 Tax=Brett... [more]
K8Z7A2_NANGC5.480e-1370.83Ribonucleoside-diphosphate reductase n=3 Tax=Monod... [more]
A0A6H5KL69_9PHAE1.720e-1269.77ATP-cone domain-containing protein n=1 Tax=Ectocar... [more]
A0A1M3CVX6_9CHLA1.880e-1272.09Ribonucleoside-diphosphate reductase n=1 Tax=Chlam... [more]
A0A875S038_EENNA1.890e-1269.77Ribonucleoside-diphosphate reductase n=1 Tax=Eenie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77485contigH-elongata_contig77485:2032..2818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue9.9e-19
Seed eggNOG ortholog2880.D7FMA2
Preferred nameRNR1
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0046939,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
EggNOG free text desc.ribonucleoside-diphosphate reductase activity
EggNOG OGsCOG0209@1,KOG1112@2759
EC1.17.4.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size299
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77485.15430.1prot_H-elongata_contig77485.15430.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77485 2043..2818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.56497-UTR-H-elongata_contig77485:2031..20421622931180.56497-UTR-H-elongata_contig77485:2031..2042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77485 2032..2042 +
1691679731.2307072-UTR-H-elongata_contig77485:2031..20421691679731.2307072-UTR-H-elongata_contig77485:2031..2042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77485 2032..2042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.5791934-CDS-H-elongata_contig77485:2042..21831622931180.5791934-CDS-H-elongata_contig77485:2042..2183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77485 2043..2183 +
1691679731.240959-CDS-H-elongata_contig77485:2042..21831691679731.240959-CDS-H-elongata_contig77485:2042..2183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77485 2043..2183 +
1622931180.6110108-CDS-H-elongata_contig77485:2671..28181622931180.6110108-CDS-H-elongata_contig77485:2671..2818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77485 2672..2818 +
1691679731.249061-CDS-H-elongata_contig77485:2671..28181691679731.249061-CDS-H-elongata_contig77485:2671..2818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77485 2672..2818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77485.15430.1

>prot_H-elongata_contig77485.15430.1 ID=prot_H-elongata_contig77485.15430.1|Name=mRNA_H-elongata_contig77485.15430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MVTGRPASTDERREGARARTLEGLEDVNSSQSSSEEDAFVFPAKDGEGET
PSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLIAQKVR
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mRNA from alignment at H-elongata_contig77485:2032..2818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77485.15430.1 ID=mRNA_H-elongata_contig77485.15430.1|Name=mRNA_H-elongata_contig77485.15430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=787bp|location=Sequence derived from alignment at H-elongata_contig77485:2032..2818+ (Himanthalia elongata Himel1 dioecious)
GAGAGGCGGCGATGGTGACGGGTCGTCCAGCCAGCACCGACGAACGTCGC
GAGGGGGCGCGAGCGAGGACATTAGAGGGGTTGGAAGACGTCAACAGCTC
GCAGTCCTCGTCGGAAGAAGATGCGTTCGTGTTTCCCGCCAAAGACGGGG
AGGTGATCGTGTTTAGTCCTAATAGTTAGTATTATGCGTGAAGCACTGGT
GAACGAATTAACGGTGATGTGTAATGTGGCGTTGAAACATATGTCCTGAT
GACGTTTACACTAAAACAGTCTGTCTTGCGCCGCCTCTCATCCCTCTGGG
GTTGCTTCTGCTGCTGTTGCGCTCGACGGCACTGGATCCATGTTGCCTGT
TGTGTCTGTTTGCTTAGGGTTATCGGTTTCCCGGAATTATCTTCCGACCA
CACCCCCATTTCTCGAATCACGTGAAACACGCGTCCTCTTCTGTCAGGAA
TGTTTTTGCCATAAAGTCGATCCCGAGAGCGGTTTATCTCCTGCTCAAAC
GAATGAGCACCGTGTAACGGGCCGAGGGCTTCTTGCACGCCGGCGGCGGC
GGAGGCTGTATCTTGATGCCACCCTCAGCCGTAGCACGTAACTCGTTCTC
TTTCTCGCGCGCGTGTTCGTGCGCGCCGCGCGCTTCCCAGGGGGAAACGC
CTTCGATGCACGTCGTGAAGCGGGACGGCCGTCGAGAGCCGGTGATGTTC
GACAAGATCACTGCGCGAATCCGCCGGCTGTGCTGGGGCCTTGACGAGCG
CTACATCGACCCCGTGCTCATCGCCCAGAAGGTGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig77485:2032..2818+

>mRNA_H-elongata_contig77485.15430.1 ID=mRNA_H-elongata_contig77485.15430.1|Name=mRNA_H-elongata_contig77485.15430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig77485:2032..2818+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACGGGTCGTCCAGCCAGCACCGACGAACGTCGCGAGGGGGCGCG
AGCGAGGACATTAGAGGGGTTGGAAGACGTCAACAGCTCGCAGTCCTCGT
CGGAAGAAGATGCGTTCGTGTTTCCCGCCAAAGACGGGGAGATGGTGACG
GGTCGTCCAGCCAGCACCGACGAACGTCGCGAGGGGGCGCGAGCGAGGAC
ATTAGAGGGGTTGGAAGACGTCAACAGCTCGCAGTCCTCGTCGGAAGAAG
ATGCGTTCGTGTTTCCCGCCAAAGACGGGGAGGGGGAAACGCCTTCGATG
CACGTCGTGAAGCGGGACGGCCGTCGAGAGCCGGTGATGTTCGACAAGAT
CACTGCGCGAATCCGCCGGCTGTGCTGGGGCCTTGACGAGCGCTACATCG
ACCCCGTGCTCATCGCCCAGAAGGTGCGGGGGGAAACGCCTTCGATGCAC
GTCGTGAAGCGGGACGGCCGTCGAGAGCCGGTGATGTTCGACAAGATCAC
TGCGCGAATCCGCCGGCTGTGCTGGGGCCTTGACGAGCGCTACATCGACC
CCGTGCTCATCGCCCAGAAGGTGCGG
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