prot_H-elongata_contig77439.15423.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig77439.15423.1
Unique Name	prot_H-elongata_contig77439.15423.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	132

Homology

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: D7G5I7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I7_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 2.930e-86
Identity = 129/132 (97.73%), Postives = 132/132 (100.00%), Query Frame = 0

Query:    1 MERNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            M+RNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNP+SAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVY+K
Sbjct:   43 MDRNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVK 174

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: A0A6H5L153_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L153_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 3.410e-80
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0

Query:    8 RNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            RNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNP+SAVMAAGGDPSQLPKDHVQDDF  XXXX   ELSKFGEISEMNVCDNLGDHLIGNVY+K
Sbjct:    5 RNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPSQLPKDHVQDDFXXXXXXXXXELSKFGEISEMNVCDNLGDHLIGNVYVK 129

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: A0A835YWK2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWK2_9STRA)

HSP 1 Score: 205 bits (522), Expect = 4.700e-65
Identity = 90/123 (73.17%), Postives = 106/123 (86.18%), Query Frame = 0

Query:   10 GMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            G +G  RGGAEHLARIHGTEEDKVNCPF+YKIGACRHGDRCSRQHHKPPFSQT+L+ ++YQNP SA++AAGGDP+ + +D   D+FED    VY+EL KFG + EM+VCDNLGDHL+GNVYIK
Sbjct:   13 GGAGGPRGGAEHLARIHGTEEDKVNCPFYYKIGACRHGDRCSRQHHKPPFSQTLLLSHMYQNPASALLAAGGDPNAIDQDAANDEFEDFYEEVYEELCKFGSVEEMHVCDNLGDHLVGNVYIK 135

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: A0A7S3XMX4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMX4_HETAK)

HSP 1 Score: 201 bits (512), Expect = 3.100e-63
Identity = 87/118 (73.73%), Postives = 103/118 (87.29%), Query Frame = 0

Query:   15 ARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            ARGGAEHLARIHGTEEDKVNCPF++KIGACRHGDRCSRQHHKPPFSQT+LVQ++YQNP SA+ AAGGDP+ +     Q+DFE+    V++ELSKFG + E+N+CDNLGDHL+GNVY K
Sbjct:   20 ARGGAEHLARIHGTEEDKVNCPFYFKIGACRHGDRCSRQHHKPPFSQTVLVQHMYQNPASAIAAAGGDPNSIDHRQAQEDFEEFYEEVFEELSKFGAVEELNICDNLGDHLVGNVYAK 137

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: A0A7S3ZUE9_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUE9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.200e-60
Identity = 92/130 (70.77%), Postives = 108/130 (83.08%), Query Frame = 0

Query:    3 RNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            RN RDR    G ARGGA HLARIHGTEEDKVNCPF++KIGACRHGDRCSRQHHKPPFSQT++VQ++YQNP S + AAGGDPSQL    VQ++F+D    VY EL+ +GEI E+NVC+NLGDH++GNVY K
Sbjct:  116 RNWRDRE--LGGARGGATHLARIHGTEEDKVNCPFYFKIGACRHGDRCSRQHHKPPFSQTMIVQHMYQNPASQIAAAGGDPSQLDPKKVQEEFDDFYEEVYDELAGYGEIEELNVCENLGDHMVGNVYCK 243

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: F0Y2V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2V2_AURAN)

HSP 1 Score: 192 bits (488), Expect = 3.120e-60
Identity = 83/114 (72.81%), Postives = 99/114 (86.84%), Query Frame = 0

Query:   19 AEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            A HLARIHGTEEDKVNCPF++KIGACRHGDRCSRQHHKPPFSQT++VQ++YQNP S + AAGGDPSQL    VQ++F+D    VY EL+K+GEI E+NVC+NLGDH++GNVY K
Sbjct:    1 ATHLARIHGTEEDKVNCPFYFKIGACRHGDRCSRQHHKPPFSQTMIVQHMYQNPASQIAAAGGDPSQLDPKKVQEEFDDFYEEVYDELAKYGEIEELNVCENLGDHMVGNVYAK 114

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: A0A835ZC00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC00_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.570e-59
Identity = 84/115 (73.04%), Postives = 100/115 (86.96%), Query Frame = 0

Query:   18 GAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            GAEHLARIHGTEEDKVNCPF+YKIGACRHGDRCSRQHHKPPFSQTIL+ +++QNP SA++AAGG+P  + ++   D+FED    VY+EL KFG + EMNVCDNLGDHL+GNVY+K
Sbjct:   62 GAEHLARIHGTEEDKVNCPFYYKIGACRHGDRCSRQHHKPPFSQTILLSHMFQNPASALIAAGGNPETIDQEATNDEFEDFYEEVYEELCKFGTVEEMNVCDNLGDHLVGNVYVK 176

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: T0S0M7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S0M7_SAPDV)

HSP 1 Score: 191 bits (486), Expect = 1.290e-58
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = 0

Query:   17 GGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            GGAEHLARIHGTEED+VNCPF++KIGACRHGDRCSR H+KP FSQTILV+++YQNP+S ++AA GDPSQL +  V +DFED    VY+EL KFG++ E+NVCDNLGDHL+GNVY K
Sbjct:   51 GGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVKHMYQNPLSVIIAANGDPSQLDQKTVDEDFEDFFEEVYEELCKFGKVDELNVCDNLGDHLVGNVYAK 166

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: A0A7S2DKM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKM2_9STRA)

HSP 1 Score: 188 bits (477), Expect = 3.030e-58
Identity = 77/120 (64.17%), Postives = 104/120 (86.67%), Query Frame = 0

Query:   13 GSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            G++ GGA+HLARIHGTEED+VNCPF++KIGACRHGDRCSRQHHKPPFSQTILV++++Q+P+S +M+ GGDPS L    + DD+++    +Y+EL+ FG++ E NVC+NLGDH++GNVY+K
Sbjct:   16 GNSSGGAKHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRQHHKPPFSQTILVKHMWQHPLSEIMSLGGDPSALDPKKIADDYDEFYEEIYEELASFGKVEECNVCENLGDHIVGNVYVK 135

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BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Match: A0A024TD10_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TD10_9STRA)

HSP 1 Score: 189 bits (480), Expect = 5.170e-58
Identity = 86/127 (67.72%), Postives = 106/127 (83.46%), Query Frame = 0

Query:    6 RDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYIK 132
            RDR G +    GGAEHLARIHGTEED+VNCPF++KIGACRHGDRCSR H+KP FSQT+LV+++YQNP+S V+AA GDP+QL +  V +DFED    V++EL KFG++ E+NVCDNLGDHL+GNVY K
Sbjct:   27 RDRRGDATG--GGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRSHNKPVFSQTLLVKHMYQNPLSTVIAANGDPNQLDQKTVDEDFEDFFEEVFEELCKFGKLEELNVCDNLGDHLVGNVYAK 151

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot

BLAST of mRNA_H-elongata_contig77439.15423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5I7_ECTSI	2.930e-86	97.73	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L153_9PHAE	3.410e-80	94.40	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A835YWK2_9STRA	4.700e-65	73.17	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A7S3XMX4_HETAK	3.100e-63	73.73	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S3ZUE9_9STRA	1.200e-60	70.77	Hypothetical protein n=4 Tax=Pelagomonas calceolat...	[more]
F0Y2V2_AURAN	3.120e-60	72.81	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]
A0A835ZC00_9STRA	1.570e-59	73.04	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
T0S0M7_SAPDV	1.290e-58	72.41	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A7S2DKM2_9STRA	3.030e-58	64.17	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A024TD10_9STRA	5.170e-58	67.72	Uncharacterized protein n=7 Tax=Aphanomyces TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 54..74 score: 41.34 coord: 35..54 score: 77.27 coord: 92..107 score: 44.89 coord: 120..132 score: 38.14
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 19..132
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 60..132 e-value: 4.2E-17 score: 64.4
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 32..55 e-value: 8.1E-7 score: 28.8
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 29..57 score: 12.361
None	No IPR available	PANTHER	PTHR12620:SF8	U2 SMALL NUCLEAR RNA AUXILIARY FACTOR 1	coord: 19..132

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig77439	contig	H-elongata_contig77439:27..2094 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig77439.15423.1	mRNA_H-elongata_contig77439.15423.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig77439 18..2094 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig77439.15423.1 ID=prot_H-elongata_contig77439.15423.1|Name=mRNA_H-elongata_contig77439.15423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MERNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRC
SRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDFFE
EVYQELSKFGEISEMNVCDNLGDHLIGNVYIK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009145	U2AF_small
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000571	Znf_CCCH