mRNA_H-elongata_contig77433.15421.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77433.15421.1
Unique NamemRNA_H-elongata_contig77433.15421.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: D7FN57_ECTSI (Glutamate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN57_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.750e-31
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGV 195
            QVVTRFPPEPSGYLHIGHVKACLLNQYYAQ YGGK+IVRFDDTNPSKEKEEYA SIV+DL TLG+
Sbjct:  347 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQHYGGKMIVRFDDTNPSKEKEEYAASIVQDLATLGI 411
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A7R9ZTU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTU8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.040e-30
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSS 222
            QVVTRFPPEPSGYLH+GH KACLLN YYA+ Y G+LI+RFDDTNPSKEKEEY +SI++DL TLGV  ++   +S
Sbjct:   37 QVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRLIIRFDDTNPSKEKEEYQESILQDLTTLGVKGSVLTYTS 110
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A7S4AI61_9STRA (Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AI61_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.360e-29
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSSPVSLSILK 246
            QVVTRFPPEPSGYLH+GH KACLLN YYA+ Y G++IVRFDDTNPSKEKEEY  SIV+DL+TLGV+  +   +S   L+I K
Sbjct:  370 QVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQQSIVEDLKTLGVNNDVLTYTSDYILAIQK 451
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A1E7EUW5_9STRA (Glutamate--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUW5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.200e-29
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSSPVSLSILKAVHDLFSN 270
            QVVTRFPPEPSGYLH+GH KACLLN YYA+ Y G+LI+RFDDTNPSKEKEEY  SI++DL TLGV   +   +S    +I K    + +N
Sbjct:   11 QVVTRFPPEPSGYLHVGHAKACLLNDYYAKRYQGRLIIRFDDTNPSKEKEEYQQSILEDLATLGVKGDVLTYTSDYITAIQKYALQMIAN 100
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A7S2GKB1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GKB1_9DINO)

HSP 1 Score: 108 bits (270), Expect = 1.180e-28
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGV 195
            +VVTRFPPEPSGYLHIGH KA LLN  YAQ+YGGK+++RFDDTNPSKEK EY +SIV+DL+ LG+
Sbjct:    1 KVVTRFPPEPSGYLHIGHAKAALLNYTYAQLYGGKMLLRFDDTNPSKEKMEYQESIVEDLKLLGI 65
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A7S4E5R1_9STRA (Glutamate--tRNA ligase (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5R1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.190e-28
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSSPVSLS 237
            +VVTRFPPEPSGYLHIGH KA LLN YYA+ YGG+L+VRFDDTNPSKEK EYAD+I+KDL+TLGV      +   V+LS
Sbjct:  315 EVVTRFPPEPSGYLHIGHAKAVLLNDYYARRYGGRLLVRFDDTNPSKEKGEYADNILKDLKTLGVDVEADKKDGYVTLS 393
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A7R9ZU84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZU84_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.500e-28
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSS 222
            QVVTRFPPEPSGYLH+GH KACLLN YYA+ Y G+LI+RFDDTNPSKEKEEY +SI++DL TLGV  ++   +S
Sbjct:  379 QVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRLIIRFDDTNPSKEKEEYQESILQDLTTLGVKGSVLTYTS 452
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A1E5R2K5_9ASCO (Glutamate--tRNA ligase n=1 Tax=Hanseniaspora osmophila TaxID=56408 RepID=A0A1E5R2K5_9ASCO)

HSP 1 Score: 115 bits (289), Expect = 4.010e-28
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSS 222
            QVVTRFPPEPSGYLHIGH KA LLNQY+AQ + GKLI+RFDDTNPSKEKEEY DSI++DL  LG+   +   SS
Sbjct:  209 QVVTRFPPEPSGYLHIGHAKAALLNQYFAQEFDGKLIIRFDDTNPSKEKEEYQDSIIEDLELLGIKGDVLTYSS 282
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A448ZPH2_9STRA (Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPH2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.730e-28
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSS 222
            +VVTRFPPEPSGYLH+GH KACLLN YYA+ Y G++IVRFDDTNPSKEKEEY  SIV+DL+TLGV   +   +S
Sbjct:  376 RVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQQSIVEDLKTLGVKNDVLTYTS 449
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BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Match: A0A433D6U5_9FUNG (tRNA synthetases class I, catalytic domain-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D6U5_9FUNG)

HSP 1 Score: 111 bits (278), Expect = 1.470e-27
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKEEYADSIVKDLRTLGVSFAIAAQSS 222
            +VVTRFPPEPSGYLHIGH KA LLNQY+AQ YGGK+I+RFDDTNPSKEK E+ +SI +DL  +GV   I   +S
Sbjct:  216 EVVTRFPPEPSGYLHIGHAKAALLNQYFAQTYGGKMIIRFDDTNPSKEKTEFEESIKEDLALIGVESRIVTHTS 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77433.15421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN57_ECTSI1.750e-3190.77Glutamate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7R9ZTU8_9STRA1.040e-3071.62Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S4AI61_9STRA1.360e-2969.51Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia au... [more]
A0A1E7EUW5_9STRA7.200e-2962.22Glutamate--tRNA ligase n=1 Tax=Fragilariopsis cyli... [more]
A0A7S2GKB1_9DINO1.180e-2875.38Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S4E5R1_9STRA1.190e-2870.89Glutamate--tRNA ligase (Fragment) n=2 Tax=Pelagomo... [more]
A0A7R9ZU84_9STRA1.500e-2871.62Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A1E5R2K5_9ASCO4.010e-2872.97Glutamate--tRNA ligase n=1 Tax=Hanseniaspora osmop... [more]
A0A448ZPH2_9STRA7.730e-2871.62Glutamate--tRNA ligase n=1 Tax=Pseudo-nitzschia mu... [more]
A0A433D6U5_9FUNG1.470e-2768.92tRNA synthetases class I, catalytic domain-contain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77433contigH-elongata_contig77433:130..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.2e-27
Seed eggNOG ortholog2880.D7FN57
Preferred nameEPRS
KEGG rclassRC00055,RC00523
KEGG koko:K01885,ko:K14163
KEGG ReactionR03661,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
GOsGO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004818,GO:0004827,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0017148,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034641,GO:0034645,GO:0034660,GO:0035613,GO:0035770,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0046483,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097452,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.glutamyl-tRNA aminoacylation
EggNOG OGsCOG0008@1,KOG1147@2759
EC6.1.1.15,6.1.1.17
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutamyl-tRNA Synthetase
Ec32 orthologEc-06_008480.1
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.0068524-CDS-H-elongata_contig77433:129..4051622931180.0068524-CDS-H-elongata_contig77433:129..405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77433 130..405 +
1691679730.9927702-CDS-H-elongata_contig77433:129..4051691679730.9927702-CDS-H-elongata_contig77433:129..405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77433 130..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77433.15421.1prot_H-elongata_contig77433.15421.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77433 130..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77433.15421.1

>prot_H-elongata_contig77433.15421.1 ID=prot_H-elongata_contig77433.15421.1|Name=mRNA_H-elongata_contig77433.15421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
QVVTRFPPEPSGYLHIGHVKACLLNQYYAQVYGGKLIVRFDDTNPSKEKE
EYADSIVKDLRTLGVSFAIAAQSSPVSLSILKAVHDLFSNR*
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mRNA from alignment at H-elongata_contig77433:130..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77433.15421.1 ID=mRNA_H-elongata_contig77433.15421.1|Name=mRNA_H-elongata_contig77433.15421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig77433:130..405+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGACTCGGTTTCCTCCCGAGCCGTCGGGTTACCTGCACATCGG
CCACGTGAAGGCGTGCCTGCTCAACCAGTATTACGCGCAGGTCTACGGGG
GAAAGCTGATTGTCCGCTTCGACGACACGAACCCTTCCAAGGAAAAGGAG
GAGTACGCCGACAGCATCGTCAAGGACCTTCGTACGCTAGGGGTCAGTTT
CGCCATTGCAGCCCAGTCCAGTCCAGTCAGTCTGTCGATCCTTAAAGCCG
TACACGACCTCTTCTCGAATCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig77433:130..405+

>mRNA_H-elongata_contig77433.15421.1 ID=mRNA_H-elongata_contig77433.15421.1|Name=mRNA_H-elongata_contig77433.15421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig77433:130..405+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGACTCGGTTTCCTCCCGAGCCGTCGGGTTACCTGCACATCGG
CCACGTGAAGGCGTGCCTGCTCAACCAGTATTACGCGCAGGTCTACGGGG
GAAAGCTGATTGTCCGCTTCGACGACACGAACCCTTCCAAGGAAAAGGAG
GAGTACGCCGACAGCATCGTCAAGGACCTTCGTACGCTAGGGGTCAGTTT
CGCCATTGCAGCCCAGTCCAGTCCAGTCAGTCTGTCGATCCTTAAAGCCG
TACACGACCTCTTCTCGAATCGGTGACAGGTGGTGACTCGGTTTCCTCCC
GAGCCGTCGGGTTACCTGCACATCGGCCACGTGAAGGCGTGCCTGCTCAA
CCAGTATTACGCGCAGGTCTACGGGGGAAAGCTGATTGTCCGCTTCGACG
ACACGAACCCTTCCAAGGAAAAGGAGGAGTACGCCGACAGCATCGTCAAG
GACCTTCGTACGCTAGGGGTCAGTTTCGCCATTGCAGCCCAGTCCAGTCC
AGTCAGTCTGTCGATCCTTAAAGCCGTACACGACCTCTTCTCGAATCGGT
GA
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