mRNA_H-elongata_contig7741.15418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7741.15418.1
Unique NamemRNA_H-elongata_contig7741.15418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.370e-95
Identity = 159/199 (79.90%), Postives = 170/199 (85.43%), Query Frame = 1
Query:   34 MVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLE-EGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVET 627
            MVHAIR SAR PEKKDCVTT+RTVK  +MEKVSRLI+GE VCITSD WTSCAN+TYMSL  TLIT AWKLVTLSVDCSK EGTTTGDALAAGI   VAKHGLTGKVT VTTDC+PSMVKMGRLL  +  V T IGCCN++LEST+SIVFN P V+KVM LA GLVTRY TSSQAADRLKQFVKTY G +NKR IQDV T
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 2.060e-57
Identity = 103/220 (46.82%), Postives = 143/220 (65.00%), Query Frame = 1
Query:    7 MLADKSFKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
            M+ ++ F EMV  ++S A  P K+  +  +R +K  + ++V   + GEHV +TSD WTS +N+TYM    T I+  + LV L V+C K  G TTG+ L   +   +A++GLT +    TTDC+PSMVK GRLLEE +  TH+GC  H+LES TS  F  PGV K +ALA  +VTRY+ SSQA+DRL+Q ++     E K+ +QDVETRWWST + + RLL
Sbjct:    1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLL 219          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 9.040e-51
Identity = 104/212 (49.06%), Postives = 135/212 (63.68%), Query Frame = 1
Query:   34 MVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLE-EGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
            MV A+   A+ P +++ ++ +R VKTA+  +V+ ++  E V IT+D WTS  N +YMSL V  I   WKL  LS+DC+K  GTTTG+ LAA +   V +H LTG+V    TDC+PSM+K GRLLE +G   +HIGC NH++ESTTS VFN   +   + LA  LV RY  SSQ A RL Q        E    +QDVETRWWST +MV RLL
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQ-MEPLSVMQDVETRWWSTWAMVVRLL 210          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.250e-46
Identity = 89/174 (51.15%), Postives = 115/174 (66.09%), Query Frame = 1
Query:  145 GEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
            GEHV +TSD WT  +N+TYMS   T I+  + LV L ++C K    T G+ L   +   +A++GLTG+   +TTDC+ SMVK GRLLEE +  TH+GC  H+LES TS  F  PGV K +ALA G+VTRY+ SSQA+DRL+Q V      E K  +QDVETRWWST   + RL+
Sbjct:    3 GEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLI 175          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.160e-45
Identity = 95/215 (44.19%), Postives = 131/215 (60.93%), Query Frame = 1
Query:   25 FKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDV-CTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
            F  +V  +   AR P ++  V  +R +K  +  +V+ ++  E+V IT+D WTS +N +YMSL V  I   W+L  LS++C+K  G+T G+ LA  I   + +HGLTG+VT   TDC+PSMVK GRLLE G     HIGC NH++ESTTS VFN   +   +A A  +V RY  SSQ + RL  F+           +QDVETRWWS+ +M+ RLL
Sbjct:   34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILK-LSPLSVLQDVETRWWSSWAMIERLL 246          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.480e-38
Identity = 74/154 (48.05%), Postives = 100/154 (64.94%), Query Frame = 1
Query:  181 SCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWST 642
            S +N+TYM+   T I+  + LV L ++  K  G TTG+ L   +   +A++GLTG+    TTDC+P MVK GRLLEE +  +H+GC  H+ ES TS  F  PGV K +AL  G+VTRY+ SSQA++RL+Q        E K+ +QDVETRWWST
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQ-VERKKVVQDVETRWWST 155          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: UPI0018C29829 (zinc finger BED domain-containing protein 4 n=1 Tax=Bombyx mori TaxID=7091 RepID=UPI0018C29829)

HSP 1 Score: 80.5 bits (197), Expect = 6.730e-14
Identity = 64/224 (28.57%), Postives = 109/224 (48.66%), Query Frame = 1
Query:    7 MLADKSFKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKV-SRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTT-SIVFNDPGVEKVMALAHGLVTRYSTSSQAADRL-KQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
            ++ ++SFK+ V  I        K      I T+     E + + L++ E++C+T+D+WTS AN +Y+++    IT  ++L T  +DCS  + + T D +   + V V +  LT K+  V TD   +   + R +       H GC  H L     + + ND  ++ ++     +V  + +SS A ++L K      P    KR IQ+V T W ST  MV R ++
Sbjct:  152 LVEERSFKKFVRWIPGYQLPTRKTISNVMIPTLFNKTKETLKTELLQIENICLTADLWTSRANESYLAVTGHFITDDYELKTCLLDCSNFQESHTNDNIQTVLIVMVKEWNLTNKINFVITD---NAANIQRAISNIG-WKHYGCYGHTLNLIVQNAISNDETLQNLLEKVKKIVRFFKSSSTALEQLLKAQTNDQPNCIPKRLIQEVPTCWNSTFQMVRRFVD 371          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A8C6P4W3_NOTFU (BED-type domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6P4W3_NOTFU)

HSP 1 Score: 79.0 bits (193), Expect = 2.050e-13
Identity = 61/220 (27.73%), Postives = 99/220 (45.00%), Query Frame = 1
Query:   25 FKEMVHAIRSSARDPEKKDCVTTIRT-----VKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
            F++++H +    + P +     T        VK+ + EK   L K E V IT+D WTSCA  +Y+++    I   W+L    +     +G+ TG  + A +  A     +  K   + TD   +MV  G    E ++  H+ C  H +   T   F    V +++     +V  +  S +AA+ L+   K        + IQDV TRW ST  M+ R+LE
Sbjct:  148 FQDLIHTLEPRYKIPSRNHITNTCMPALYAQVKSQVEEK---LAKAERVAITTDAWTSCATESYVTITAQHIAPDWELHVYVLQTRAFKGSHTGKNVGALLKQACVDWKILDKEPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKMDTVARLLGKVRRVVGFFHRSVRAAEILQDKQKQL-ALPTHKLIQDVSTRWNSTQIMLERVLE 360          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A1A8USA6_NOTFU (BED-type domain-containing protein n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8USA6_NOTFU)

HSP 1 Score: 79.0 bits (193), Expect = 2.290e-13
Identity = 61/220 (27.73%), Postives = 99/220 (45.00%), Query Frame = 1
Query:   25 FKEMVHAIRSSARDPEKKDCVTTIRT-----VKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
            F++++H +    + P +     T        VK+ + EK   L K E V IT+D WTSCA  +Y+++    I   W+L    +     +G+ TG  + A +  A     +  K   + TD   +MV  G    E ++  H+ C  H +   T   F    V +++     +V  +  S +AA+ L+   K        + IQDV TRW ST  M+ R+LE
Sbjct:  148 FQDLIHTLEPRYKIPSRNHITNTCMPALYAQVKSQVEEK---LAKAERVAITTDAWTSCATESYVTITAQHIAPDWELHVYVLQTRAFKGSHTGKNVGALLKQACVDWKILDKEPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKMDTVARLLGKVRRVVGFFHRSVRAAEILQDKQKQL-ALPTHKLIQDVSTRWNSTQIMLERVLE 360          
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: UPI0018979202 (E3 SUMO-protein ligase ZBED1-like n=5 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018979202)

HSP 1 Score: 77.0 bits (188), Expect = 9.690e-13
Identity = 58/217 (26.73%), Postives = 99/217 (45.62%), Query Frame = 1
Query:   25 FKEMVHAIRSSARDPEKKDCVTTIRTVKTA-IMEKVSR-LIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
            F++++H +    + P ++    T      A +  +V + L   E V IT+D WTSC+  +Y+++ V  I+  WKL    +     +G+ TG  + A +  A     L  K   + TD   +MV  G    E ++  H+ C  H +   T   F    V +++      V  +  S +AA+ L++  K      + + IQDV TRW S+  M+ R  E
Sbjct:  139 FQDLIHTLEPRYKIPSRQHITNTCMPALYAQVKSQVEKELAHAERVAITTDAWTSCSTESYVTITVHYISPDWKLNVHVLQTRAFKGSHTGKNIGALLKQACVDWNLLDKDPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKVDTVARLLGRVRKAVAFFHRSVRAAEILQEKQKQL-ALPSHKLIQDVSTRWNSSHDMLERFFE 351          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE1.370e-9579.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE2.060e-5746.82Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI9.040e-5149.06Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.250e-4651.15Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KUY5_9PHAE2.160e-4544.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE1.480e-3848.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018C298296.730e-1428.57zinc finger BED domain-containing protein 4 n=1 Ta... [more]
A0A8C6P4W3_NOTFU2.050e-1327.73BED-type domain-containing protein n=1 Tax=Nothobr... [more]
A0A1A8USA6_NOTFU2.290e-1327.73BED-type domain-containing protein n=8 Tax=Nothobr... [more]
UPI00189792029.690e-1326.73E3 SUMO-protein ligase ZBED1-like n=5 Tax=Nematole... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7741contigH-elongata_contig7741:2475..3143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size669
Cds size663
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.8234344-CDS-H-elongata_contig7741:2474..31371622931179.8234344-CDS-H-elongata_contig7741:2474..3137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7741 2475..3137 -
1691679730.9474642-CDS-H-elongata_contig7741:2474..31371691679730.9474642-CDS-H-elongata_contig7741:2474..3137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7741 2475..3137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.8434508-UTR-H-elongata_contig7741:3137..31431622931179.8434508-UTR-H-elongata_contig7741:3137..3143Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7741 3138..3143 -
1691679730.9592438-UTR-H-elongata_contig7741:3137..31431691679730.9592438-UTR-H-elongata_contig7741:3137..3143Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7741 3138..3143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7741.15418.1prot_H-elongata_contig7741.15418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7741 2475..3137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7741.15418.1

>prot_H-elongata_contig7741.15418.1 ID=prot_H-elongata_contig7741.15418.1|Name=mRNA_H-elongata_contig7741.15418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
MLADKSFKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHV
CITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAA
GINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLE
STTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKR
AIQDVETRWWSTCSMVARLLE
back to top

mRNA from alignment at H-elongata_contig7741:2475..3143-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7741.15418.1 ID=mRNA_H-elongata_contig7741.15418.1|Name=mRNA_H-elongata_contig7741.15418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=669bp|location=Sequence derived from alignment at H-elongata_contig7741:2475..3143- (Himanthalia elongata Himel1 dioecious)
TTACAGATGCTCGCGGATAAAAGCTTTAAGGAAATGGTTCATGCCATACG CTCAAGTGCCCGCGACCCAGAGAAGAAAGACTGTGTGACCACAATCCGTA CTGTCAAGACAGCCATAATGGAGAAAGTATCAAGACTGATCAAGGGCGAG CACGTGTGCATCACCTCCGACGTCTGGACCTCTTGCGCCAACAACACCTA CATGTCGCTGATGGTCACCCTGATCACCGGCGCGTGGAAGCTCGTAACTC TCTCGGTGGACTGCAGTAAGCCGGAAGGAACGACGACAGGTGATGCTCTT GCTGCTGGTATAAACGTCGCGGTGGCGAAGCATGGTCTGACTGGCAAGGT TACTGTGGTTACTACTGACTGCGATCCTTCAATGGTGAAGATGGGGCGCC TTCTCGAAGAAGGCGACGTTTGCACCCACATCGGCTGCTGCAACCACCAG CTTGAAAGCACCACCTCCATCGTCTTCAACGATCCGGGGGTCGAAAAGGT TATGGCCTTGGCCCACGGCTTGGTAACGCGATACTCGACATCAAGCCAGG CGGCCGACAGGCTCAAGCAGTTTGTCAAGACCTACCCTGGTTTTGAAAAC AAGCGGGCGATCCAGGACGTGGAAACCAGGTGGTGGTCCACATGCAGCAT GGTAGCTCGACTGTTAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7741:2475..3143-

>mRNA_H-elongata_contig7741.15418.1 ID=mRNA_H-elongata_contig7741.15418.1|Name=mRNA_H-elongata_contig7741.15418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig7741:2475..3143- (Himanthalia elongata Himel1 dioecious)
ATGCTCGCGGATAAAAGCTTTAAGGAAATGGTTCATGCCATACGCTCAAG
TGCCCGCGACCCAGAGAAGAAAGACTGTGTGACCACAATCCGTACTGTCA
AGACAGCCATAATGGAGAAAGTATCAAGACTGATCAAGGGCGAGCACGTG
TGCATCACCTCCGACGTCTGGACCTCTTGCGCCAACAACACCTACATGTC
GCTGATGGTCACCCTGATCACCGGCGCGTGGAAGCTCGTAACTCTCTCGG
TGGACTGCAGTAAGCCGGAAGGAACGACGACAGGTGATGCTCTTGCTGCT
GGTATAAACGTCGCGGTGGCGAAGCATGGTCTGACTGGCAAGGTTACTGT
GGTTACTACTGACTGCGATCCTTCAATGGTGAAGATGGGGCGCCTTCTCG
AAGAAGGCGACGTTTGCACCCACATCGGCTGCTGCAACCACCAGCTTGAA
AGCACCACCTCCATCGTCTTCAACGATCCGGGGGTCGAAAAGGTTATGGC
CTTGGCCCACGGCTTGGTAACGCGATACTCGACATCAAGCCAGGCGGCCG
ACAGGCTCAAGCAGTTTGTCAAGACCTACCCTGGTTTTGAAAACAAGCGG
GCGATCCAGGACGTGGAAACCAGGTGGTGGTCCACATGCAGCATGGTAGC
TCGACTGTTAGAGATGCTCGCGGATAAAAGCTTTAAGGAAATGGTTCATG
CCATACGCTCAAGTGCCCGCGACCCAGAGAAGAAAGACTGTGTGACCACA
ATCCGTACTGTCAAGACAGCCATAATGGAGAAAGTATCAAGACTGATCAA
GGGCGAGCACGTGTGCATCACCTCCGACGTCTGGACCTCTTGCGCCAACA
ACACCTACATGTCGCTGATGGTCACCCTGATCACCGGCGCGTGGAAGCTC
GTAACTCTCTCGGTGGACTGCAGTAAGCCGGAAGGAACGACGACAGGTGA
TGCTCTTGCTGCTGGTATAAACGTCGCGGTGGCGAAGCATGGTCTGACTG
GCAAGGTTACTGTGGTTACTACTGACTGCGATCCTTCAATGGTGAAGATG
GGGCGCCTTCTCGAAGAAGGCGACGTTTGCACCCACATCGGCTGCTGCAA
CCACCAGCTTGAAAGCACCACCTCCATCGTCTTCAACGATCCGGGGGTCG
AAAAGGTTATGGCCTTGGCCCACGGCTTGGTAACGCGATACTCGACATCA
AGCCAGGCGGCCGACAGGCTCAAGCAGTTTGTCAAGACCTACCCTGGTTT
TGAAAACAAGCGGGCGATCCAGGACGTGGAAACCAGGTGGTGGTCCACAT
GCAGCATGGTAGCTCGACTGTTAGAG
back to top