mRNA_H-elongata_contig7733.15410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7733.15410.1
Unique NamemRNA_H-elongata_contig7733.15410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.590e-39
Identity = 68/103 (66.02%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGVTHVRCFCNRLESI 309
            V VT + WTS +NDTYM  TCTYI+++F+L ALC+EC+KH GRTTG+DL E VK MI +NGL  R V+ TT+CE SMVK GRLL+E+EGVTH+ CFC+RLESI
Sbjct:   50 VAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESI 152          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.620e-37
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGVTHVRCFCNRLESI 309
            V +T + WT  +NDTYMS TCTYI+++F+L ALCLEC+KH  RT G+DL E VK MI +NGL  R V+ITT+CE SMVK GRLL+E+EGVTH+ CFC+RLESI
Sbjct:    6 VALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESI 108          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.250e-33
Identity = 60/94 (63.83%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   28 SKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGVTHVRCFCNRLESI 309
            S +NDTYM+ TCTYI+++F+L ALCLE +KH GRTTG+DL E VK MI +NGL  R V+ TT+CE  MVK GRLL+E+EGV+H+ CFC+R ESI
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESI 96          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.060e-21
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGV-THVRCFCNRLES 306
            V +T + WTS  NDTYMSLT T IT++++L  L ++C K EG TTGD LA G+K  + ++GL  +  ++TT+CE SMVK+GRLL     V T + C   RLES
Sbjct:   41 VCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLES 143          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.320e-20
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLK-ESEGVTHVRCFCNRLES 306
            V +T + WTS+ N++YMSLT  YI   ++L  L L+C KH G TTG+DLA  V  M+E++ L  R ++  T+CE SM+K GRLL+ +   ++H+ C  +R+ES
Sbjct:   41 VAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMES 143          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.760e-20
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKES-EGVTHVRCFCNRLES 306
            V +T + WTS++N++YMSLT  YI   ++L  L L C KH G T G+DLA  +  MIE++GL  R  +  T+CE SMVK GRLL+     + H+ C  +R+ES
Sbjct:   77 VAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMES 179          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: UPI000CE1F3DA (zinc finger BED domain-containing protein 4-like n=10 Tax=Oryzias latipes TaxID=8090 RepID=UPI000CE1F3DA)

HSP 1 Score: 60.5 bits (145), Expect = 1.980e-8
Identity = 32/103 (31.07%), Postives = 54/103 (52.43%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGVTHVRCFCNRLESI 309
            V +T + WTS   DTY+++TC +IT   EL ++ L   K     T   LAE   +++E+ G+K +   + T+C  +MV    +L     + H+ CF + L  +
Sbjct:  139 VSLTADMWTSINMDTYLAVTCHFITEEVELASVVLGVLKFPQTHTAAHLAEAKNLLMEEWGIKGKVTGLVTDCAPNMVACANILL----LRHIMCFAHMLNLV 237          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: UPI001787775F (zinc finger BED domain-containing protein 1-like n=2 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001787775F)

HSP 1 Score: 59.3 bits (142), Expect = 3.720e-8
Identity = 33/100 (33.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRT--TGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGVTHVRCFCN 294
            V +T + WTSKTN++Y+++TC +I   F+L +  L        T  T  ++A+ +++++ + GL  + VSI T+ +S+M K   LL+    V H  CF +
Sbjct:  169 VAITTDGWTSKTNESYLTITCHFINTEFQLNSAVLSTSTLLTSTNHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELLE----VKHFPCFAH 264          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: A0A814BW25_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814BW25_9BILA)

HSP 1 Score: 58.9 bits (141), Expect = 6.950e-8
Identity = 31/105 (29.52%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   10 TYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLK-----ESEGVTHVRCFCNRLESI 309
            T + WTS + D+Y+SLT  +I  + +L+ L L+ +   G      ++  +  ++++NG+K R  S+T++  S+M+K    LK     ++  + H+RCF + L  I
Sbjct:  217 TSDIWTSSSGDSYISLTLHFINNNNKLDQLLLDIKSFPGTHNYRTISSIIDSILDENGIKQRIASVTSDNASNMIKAFSRLKKMYQVQNIDIVHIRCFAHILHLI 321          
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Match: UPI00165CBCA8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165CBCA8)

HSP 1 Score: 58.5 bits (140), Expect = 7.200e-8
Identity = 30/100 (30.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLAEGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGVTHVRCFCNRL 300
            V +T + WTS+  ++Y+++TC +IT  +EL+A  L+ R      TG ++AE +K  +++ G+  +  +I T+  ++M     +  E  G+ H +CF + L
Sbjct:  168 VALTCDGWTSRATESYVTITCHFITEDWELKAFVLQTRAMHESHTGTNIAELLKTALDEWGIAAKDPAIVTDNAANMT----IAAELTGMLHFKCFAHTL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7733.15410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJV8_9PHAE1.590e-3966.02Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE2.620e-3765.05Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.250e-3363.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE4.060e-2149.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI1.320e-2044.66Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.760e-2045.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000CE1F3DA1.980e-831.07zinc finger BED domain-containing protein 4-like n... [more]
UPI001787775F3.720e-833.00zinc finger BED domain-containing protein 1-like n... [more]
A0A814BW25_9BILA6.950e-829.52Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
UPI00165CBCA87.200e-830.00zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7733contigH-elongata_contig7733:7307..7624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue7.1e-18
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.8979492-CDS-H-elongata_contig7733:7306..76241622931178.8979492-CDS-H-elongata_contig7733:7306..7624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7733 7307..7624 +
1691679730.6360579-CDS-H-elongata_contig7733:7306..76241691679730.6360579-CDS-H-elongata_contig7733:7306..7624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7733 7307..7624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7733.15410.1prot_H-elongata_contig7733.15410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7733 7307..7624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7733.15410.1

>prot_H-elongata_contig7733.15410.1 ID=prot_H-elongata_contig7733.15410.1|Name=mRNA_H-elongata_contig7733.15410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
VDVTYEAWTSKTNDTYMSLTCTYITASFELEALCLECRKHEGRTTGDDLA
EGVKMMIEQNGLKDRAVSITTECESSMVKVGRLLKESEGVTHVRCFCNRL
ESIKF*
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mRNA from alignment at H-elongata_contig7733:7307..7624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7733.15410.1 ID=mRNA_H-elongata_contig7733.15410.1|Name=mRNA_H-elongata_contig7733.15410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig7733:7307..7624+ (Himanthalia elongata Himel1 dioecious)
GTCGACGTCACCTACGAGGCATGGACATCGAAAACAAACGACACGTATAT GTCCCTCACCTGCACCTATATTACCGCCAGCTTCGAGCTGGAGGCCCTCT GTCTGGAGTGCAGGAAGCATGAAGGGCGCACGACGGGTGATGATCTCGCG GAAGGGGTGAAAATGATGATTGAACAAAATGGTCTGAAGGATCGTGCCGT GTCAATCACCACGGAGTGCGAGTCGTCAATGGTGAAGGTGGGTCGTCTCC TCAAGGAGAGCGAGGGCGTTACACACGTGAGGTGCTTCTGCAACCGCCTC GAGTCGATAAAATTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig7733:7307..7624+

>mRNA_H-elongata_contig7733.15410.1 ID=mRNA_H-elongata_contig7733.15410.1|Name=mRNA_H-elongata_contig7733.15410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig7733:7307..7624+ (Himanthalia elongata Himel1 dioecious)
GTCGACGTCACCTACGAGGCATGGACATCGAAAACAAACGACACGTATAT
GTCCCTCACCTGCACCTATATTACCGCCAGCTTCGAGCTGGAGGCCCTCT
GTCTGGAGTGCAGGAAGCATGAAGGGCGCACGACGGGTGATGATCTCGCG
GAAGGGGTGAAAATGATGATTGAACAAAATGGTCTGAAGGATCGTGCCGT
GTCAATCACCACGGAGTGCGAGTCGTCAATGGTGAAGGTGGGTCGTCTCC
TCAAGGAGAGCGAGGGCGTTACACACGTGAGGTGCTTCTGCAACCGCCTC
GAGTCGATAAAATTTTAAGTCGACGTCACCTACGAGGCATGGACATCGAA
AACAAACGACACGTATATGTCCCTCACCTGCACCTATATTACCGCCAGCT
TCGAGCTGGAGGCCCTCTGTCTGGAGTGCAGGAAGCATGAAGGGCGCACG
ACGGGTGATGATCTCGCGGAAGGGGTGAAAATGATGATTGAACAAAATGG
TCTGAAGGATCGTGCCGTGTCAATCACCACGGAGTGCGAGTCGTCAATGG
TGAAGGTGGGTCGTCTCCTCAAGGAGAGCGAGGGCGTTACACACGTGAGG
TGCTTCTGCAACCGCCTCGAGTCGATAAAATTTTAA
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