mRNA_H-elongata_contig77329.15409.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: D7FX05_ECTSI (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX05_ECTSI) HSP 1 Score: 206 bits (524), Expect = 8.610e-62 Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
RVAMSG++EV A +AE+AF WSGMTAKSRAA+MFRFHSLLE HA+ELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIEC DLREPLGVVA LVPFNFP+MV
Sbjct: 51 RVAMSGQKEVEVAAARAEEAFVGWSGMTAKSRAAIMFRFHSLLEMHADELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECRDLREPLGVVACLVPFNFPIMV 171
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A6H5JBQ6_9PHAE (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ6_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.080e-50 Identity = 99/132 (75.00%), Postives = 104/132 (78.79%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQ-------------------GKILQVSRGIECHDLREPLGVVASLV 339
RVAMSG++EV A +AE+AF WSGMTAKSRAAVMFRFHSLLEKHA+ELA LVVAENGKNKAEALASVAKGNETVEWACSMPQLMQ GKILQVSRGIEC DLREPLGVVA LV
Sbjct: 51 RVAMSGQKEVEVATARAEEAFVGWSGMTAKSRAAVMFRFHSLLEKHADELAGLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQARERATHMQRVSCAVLSLLGKILQVSRGIECRDLREPLGVVACLV 182
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A7S3XZ64_HETAK (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ64_HETAK) HSP 1 Score: 172 bits (436), Expect = 5.660e-49 Identity = 87/121 (71.90%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
+V +S Q+VA AV AE AF AW G TAK RAAVM R H+L+ +HA+ELAD+VV E GKNKAEALASVAKGNETVEWACSMPQLMQGK L+VSRGI C D R+PLGVV +VPFNFP+MV
Sbjct: 48 QVTLSSDQDVAAAVASAEAAFPAWKGQTAKQRAAVMLRLHALIAEHADELADIVVREAGKNKAEALASVAKGNETVEWACSMPQLMQGKALEVSRGIACADHRDPLGVVGCIVPFNFPIMV 168
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A3L6V3D0_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V3D0_9STRA) HSP 1 Score: 169 bits (429), Expect = 8.230e-49 Identity = 79/121 (65.29%), Postives = 102/121 (84.30%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
+VA+SGK +V AV A+ AFG WS +T K+RAA+M +FH L+ H +ELADLVV ENGKNK+EA+ASV KGNETVE+ACS+PQL+QG++L+VSRGI CH+ R+PLG++ S+VPFNFPVMV
Sbjct: 52 KVALSGKADVDAAVAYAKAAFGPWSSLTVKARAAIMLKFHELIRHHVDELADLVVLENGKNKSEAVASVLKGNETVEYACSLPQLLQGRVLEVSRGITCHETRDPLGIIVSIVPFNFPVMV 172
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A397C1E5_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C1E5_9STRA) HSP 1 Score: 167 bits (423), Expect = 5.630e-48 Identity = 78/121 (64.46%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
+VA+S K +V AV A+ AFG WS +T K+RAA+M +FH L+ H +ELADLVV ENGKNK+EA+ASV KGNETVE+ACS+PQL+QG++L+VSRGI CH+ R+PLG++ S+VPFNFPVMV
Sbjct: 52 KVALSAKADVDAAVAYAKAAFGPWSSLTVKARAAIMLKFHELIRHHVDELADLVVLENGKNKSEAVASVLKGNETVEYACSLPQLLQGRVLEVSRGITCHETRDPLGIIVSIVPFNFPVMV 172
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A6G0X2P6_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2P6_9STRA) HSP 1 Score: 169 bits (429), Expect = 6.010e-48 Identity = 79/121 (65.29%), Postives = 104/121 (85.95%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
+VA+S ++V AV A+QAFG WS +T K+RAA+M +FH L+ +A+ELADLVV ENGKNK+EALASV KGNETVE+ACS+PQL+QG++L+VSRGI CH++R+PLG++ S+VPFNFPVMV
Sbjct: 49 KVALSDSEDVEAAVAHAKQAFGPWSALTVKARAAIMLKFHELIRHNADELADLVVLENGKNKSEALASVLKGNETVEYACSLPQLIQGRVLEVSRGITCHEVRDPLGIIVSIVPFNFPVMV 169
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A2D4BG29_PYTIN (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG29_PYTIN) HSP 1 Score: 169 bits (428), Expect = 8.860e-48 Identity = 85/121 (70.25%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
R A+S +VA AV +A A AWS +T K+RAAVM RFH+LL +HA+ELAD+VV ENGKNK EALASVAKGNETVE+ACS+PQL+QG+ L VSRGI CH+LREPLGVVA +VPFNFP+MV
Sbjct: 48 RCALSNAADVAQAVARARAALPAWSALTVKARAAVMLRFHALLTEHADELADIVVRENGKNKVEALASVAKGNETVEYACSLPQLVQGRTLAVSRGITCHELREPLGVVACVVPFNFPIMV 168
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A024TEK9_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEK9_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.400e-47 Identity = 79/121 (65.29%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
+V +S K +V AV A+QAFG WS MT K+RAA+M +FH L+ H +ELADLVV ENGKNK+EA+ASV KGNETVE+ACS+PQL+QG++L+VSRGI CH+ R+PLG++ S+VPFNFPVMV
Sbjct: 50 KVTLSDKTDVDVAVAFAKQAFGTWSAMTVKARAAIMLKFHELIRHHVDELADLVVLENGKNKSEAIASVLKGNETVEYACSLPQLLQGRVLEVSRGITCHETRDPLGIIVSIVPFNFPVMV 170
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: A0A485K6H7_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K6H7_9STRA) HSP 1 Score: 167 bits (423), Expect = 4.700e-47 Identity = 81/121 (66.94%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
RVA+S +V AV A+ AF WSG+T K+RAA+M +FH L+ HA+ELADLVV ENGKNK+EA+ASV KGNETVE+ACS+PQL+QG++L+VSRGI C ++REPLGVV S+VPFNFPVMV
Sbjct: 50 RVALSDASDVNVAVAHAKAAFPGWSGLTVKARAAIMIKFHELMRHHADELADLVVLENGKNKSEAMASVLKGNETVEYACSLPQLVQGRVLEVSRGITCQEVREPLGVVVSIVPFNFPVMV 170
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Match: W4FJR0_9STRA (Methylmalonate-semialdehyde dehydrogenase (CoA acylating) n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJR0_9STRA) HSP 1 Score: 167 bits (423), Expect = 5.450e-47 Identity = 78/121 (64.46%), Postives = 101/121 (83.47%), Query Frame = 1
Query: 1 RVAMSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLVVAENGKNKAEALASVAKGNETVEWACSMPQLMQGKILQVSRGIECHDLREPLGVVASLVPFNFPVMV 363
+VA+S K +V AV A+ AFG WS +T K+RAA+M +FH L+ H +ELADLVV ENGKNK+EA+ASV KGNETVE+ACS+PQL+QG++L+VSRGI CH+ R+PLG++ S+VPFNFPVMV
Sbjct: 52 KVALSAKADVDAAVAYAKAAFGPWSSLTVKARAAIMLKFHELIRHHVDELADLVVLENGKNKSEAVASVLKGNETVEYACSLPQLLQGRVLEVSRGITCHETRDPLGIIVSIVPFNFPVMV 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77329.15409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77329.15409.1 >prot_H-elongata_contig77329.15409.1 ID=prot_H-elongata_contig77329.15409.1|Name=mRNA_H-elongata_contig77329.15409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MSGKQEVATAVVQAEQAFGAWSGMTAKSRAAVMFRFHSLLEKHAEELADLback to top mRNA from alignment at H-elongata_contig77329:472..1980+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77329.15409.1 ID=mRNA_H-elongata_contig77329.15409.1|Name=mRNA_H-elongata_contig77329.15409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1509bp|location=Sequence derived from alignment at H-elongata_contig77329:472..1980+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77329:472..1980+ >mRNA_H-elongata_contig77329.15409.1 ID=mRNA_H-elongata_contig77329.15409.1|Name=mRNA_H-elongata_contig77329.15409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig77329:472..1980+ (Himanthalia elongata Himel1 dioecious)back to top |