mRNA_H-elongata_contig77291.15405.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77291.15405.1
Unique NamemRNA_H-elongata_contig77291.15405.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig77291.15405.1 vs. uniprot
Match: D7G702_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G702_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 8.640e-43
Identity = 135/307 (43.97%), Postives = 170/307 (55.37%), Query Frame = 1 
Query:  190 IEMTNAR-EDIEQIEHHILSPTDRPRGETLDSMLDADAGAKRISLELPAMDDGSNFEDEFDPILAVIRKSQQKDATANAASFRAGASGTTTSQAQSFPVRGDEEGVTPLSSPPPDKDASETHRGSPRTRTAFAAGFLSILPGSMRARAGDVMAHSSAQISRSATAFRSALEKGGAP-SALDSRKRRHPD-PLRAPDG-TAELEEGMVGKGVSGGRRAAGGGEVDGVRLVSADELLSEEERQQLAAFSELTGGSTVGA-CAWRRLRKGMIVVVAIALVGLPFYLWRWMTIALAVTEEGNAVTAIGADR 1095
            IE+   R ED  ++  H   P+  PRG T +    +  G +  S+E    D G NFEDEFDPILA IRK QQ  A+  AA+      G            G E G          ++A++   G P T ++ AAGFLS+LPG MRA+AG+VMA SSA+IS SA AFRSAL  GGA  SA D  KRR  D   R  DG   ELEEG               G+ D VRL++ +E+LSEEERQQLA+F+   GG+  G  C WRRLRK + V V I L+GL  YLWRW T+ L   +  N V  +G++R
Sbjct:   92 IEIPQLRQEDNAELRSH---PS--PRGSTSEH---SSFGDRFASME----DGGVNFEDEFDPILASIRKPQQPPASTTAAASSMSPRGRXXXXXXXXXPSGRERG----------REANDA--GRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQSATDKSKRRQSDHTCRGVDGGDHELEEGR--------------GDEDDVRLMNVNEVLSEEERQQLASFA---GGAGAGRFCGWRRLRKYVPVFVGIGLLGL-LYLWRWTTL-LVGKDTANEVKVLGSER 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77291.15405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G702_ECTSI8.640e-4343.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77291contigH-elongata_contig77291:437..2440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011590.1
Exons3
Model size1101
Cds size1101
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77291.15405.1prot_H-elongata_contig77291.15405.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77291 437..2440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.3664212-CDS-H-elongata_contig77291:436..5461622931178.3664212-CDS-H-elongata_contig77291:436..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77291 437..546 -
1691679730.4814868-CDS-H-elongata_contig77291:436..5461691679730.4814868-CDS-H-elongata_contig77291:436..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77291 437..546 -
1622931178.3853767-CDS-H-elongata_contig77291:774..8711622931178.3853767-CDS-H-elongata_contig77291:774..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77291 775..871 -
1691679730.5013618-CDS-H-elongata_contig77291:774..8711691679730.5013618-CDS-H-elongata_contig77291:774..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77291 775..871 -
1622931178.4017398-CDS-H-elongata_contig77291:1546..24401622931178.4017398-CDS-H-elongata_contig77291:1546..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77291 1547..2440 -
1691679730.511388-CDS-H-elongata_contig77291:1546..24401691679730.511388-CDS-H-elongata_contig77291:1546..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77291 1547..2440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77291.15405.1

>prot_H-elongata_contig77291.15405.1 ID=prot_H-elongata_contig77291.15405.1|Name=mRNA_H-elongata_contig77291.15405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=367bp
LKRLREEQERSERSKEESIRLLRASESSVDSSGARSGVRADDAGFANNLR
GKRSGGDGACLAGIEMTNAREDIEQIEHHILSPTDRPRGETLDSMLDADA
GAKRISLELPAMDDGSNFEDEFDPILAVIRKSQQKDATANAASFRAGASG
TTTSQAQSFPVRGDEEGVTPLSSPPPDKDASETHRGSPRTRTAFAAGFLS
ILPGSMRARAGDVMAHSSAQISRSATAFRSALEKGGAPSALDSRKRRHPD
PLRAPDGTAELEEGMVGKGVSGGRRAAGGGEVDGVRLVSADELLSEEERQ
QLAAFSELTGGSTVGACAWRRLRKGMIVVVAIALVGLPFYLWRWMTIALA
VTEEGNAVTAIGADRA*
back to top

mRNA from alignment at H-elongata_contig77291:437..2440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77291.15405.1 ID=mRNA_H-elongata_contig77291.15405.1|Name=mRNA_H-elongata_contig77291.15405.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2004bp|location=Sequence derived from alignment at H-elongata_contig77291:437..2440- (Himanthalia elongata Himel1 dioecious)
CTCAAAAGACTTCGGGAAGAGCAGGAGAGGTCGGAGCGATCGAAGGAGGA
GTCCATTCGCCTTTTACGAGCGTCTGAAAGCAGCGTGGATTCGTCTGGCG
CGAGGTCGGGGGTAAGGGCGGACGATGCCGGTTTCGCAAATAATCTTCGA
GGGAAGCGTAGCGGCGGCGACGGCGCGTGTCTCGCCGGCATCGAGATGAC
GAATGCAAGAGAGGACATCGAGCAGATCGAGCACCATATTTTGTCCCCTA
CGGATCGCCCGCGTGGCGAGACTCTCGACAGCATGCTCGACGCGGACGCT
GGCGCCAAGAGGATCAGCTTGGAGCTCCCTGCGATGGACGACGGTAGCAA
TTTCGAGGACGAATTTGATCCGATCCTGGCAGTCATTCGAAAGTCCCAAC
AGAAGGACGCAACAGCAAACGCGGCATCGTTTCGAGCGGGCGCCAGCGGA
ACAACGACATCCCAAGCCCAGTCGTTTCCCGTTCGTGGAGACGAAGAAGG
GGTGACTCCTCTGTCTTCCCCGCCCCCCGATAAAGACGCCTCCGAGACCC
ACCGGGGATCTCCTCGCACTCGCACTGCCTTCGCAGCTGGTTTTCTGTCC
ATTTTACCGGGAAGCATGCGCGCCCGCGCGGGGGATGTGATGGCGCATTC
TTCGGCGCAGATCTCCAGGTCTGCAACCGCTTTTCGCTCAGCGTTGGAAA
AAGGTGGCGCGCCGTCGGCACTGGATTCGCGGAAACGGAGGCATCCAGAC
CCGCTGCGGGCACCTGATGGCACCGCGGAGCTAGAAGAAGGAATGGTGGG
CAAGGGGGTTAGCGGGGGTAGGCGAGCGGCGGGAGGAGGGGAAGTGGATG
GCGTGCGGTTGGTGAGCGCGGACGAGCTGCTGAGTGAAGAAGAGGTGAGC
GAGCGCCATAAGAAGGGGAATATATATATATATATATATCTGGCATTACG
ACGGGGTTGATCTATAAGGCATTTTTTGCTTCATCGCTGGTCCCTGTCCG
AGGCACTTTCGGGAGATTGCTGCGTTCAAAAAAAGCTAGAGACGTGATTA
ACGCGTGTGACTATCGATGTTAGGGCTCCTCTTTCCGTTCCCACGGCTTG
ATGAACGGATGTTGAGCAAGATAAACGAAGTGAAGGCGAACCCAACCCGC
CCACATCAAACGACTAAGCAGACAACCGGAGCGCTGCGACTAGGGTCATT
CTCCCCCACATGATGAGTTTTCAAGTGTATCAAGTGTGTCAACGGCCTTT
GCAACGATGTTCCTTGGGTTAAGAGAGAGCAAGGAGCGTCGGGGCATTAG
GGACCATTTTCCTCCCCTCGACGGCGATGCAAAGGACACCCACCCTTCGT
TTTTTGGGGGGTGTCCTTGACGTAAGCAGGACTCTCTGCTTGTCACCATA
CCCCACCCGCAGCTGAAAACTAAAAAAAATCCACCTTCCCCCAGACATGT
CTTGAACGTTTTCCACCAGGCATTCGATGGAACGTTCGTTCTTGCCATAT
ACAACACATAATCAGAATGCCTCGAGCCATTTGAGCACCAGAGTGTTATA
TATTATGCCCGACGCGCAGAGACAGCAACTGGCGGCTTTCTCCGAACTGA
CCGGGGGATCGACGGTCGGGGCCTGTGCGTGGCGAAGGCTCCGAAAAGGA
ATGATTGTCGTCGTGGGTAAGACGAACTTCGGCGGCTATTAATAGACAAA
ATACCTACCTCGCCTTGCTTGCTCTTATTAGTGGGCAACAAAGCAGTATC
CTTGAGCTGCGCCTCGCGGTTAGACTCCCACCCGTCTGCCGCGTGTAAAA
CGCGCGAGCAAGACTGAATCAAGCTCAAAAATTAATTCGTTGATGATTCG
TGGTTGCCTCGTTGCCCTTTTCCGGTCGATCTCCCCCCTAACAGCCATTG
CTCTGGTGGGCTTGCCATTCTACCTGTGGAGATGGATGACGATCGCCTTA
GCAGTTACCGAAGAAGGAAACGCCGTTACCGCGATAGGGGCCGACAGAGC
CTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig77291:437..2440-

>mRNA_H-elongata_contig77291.15405.1 ID=mRNA_H-elongata_contig77291.15405.1|Name=mRNA_H-elongata_contig77291.15405.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2202bp|location=Sequence derived from alignment at H-elongata_contig77291:437..2440- (Himanthalia elongata Himel1 dioecious)
CTCAAAAGACTTCGGGAAGAGCAGGAGAGGTCGGAGCGATCGAAGGAGGA
GTCCATTCGCCTTTTACGAGCGTCTGAAAGCAGCGTGGATTCGTCTGGCG
CGAGGTCGGGGGTAAGGGCGGACGATGCCGGTTTCGCAAATAATCTTCGA
GGGAAGCGTAGCGGCGGCGACGGCGCGTGTCTCGCCGGCATCGAGATGAC
GAATGCAAGAGAGGACATCGAGCAGATCGAGCACCATATTTTGTCCCCTA
CGGATCGCCCGCGTGGCGAGACTCTCGACAGCATGCTCGACGCGGACGCT
GGCGCCAAGAGGATCAGCTTGGAGCTCCCTGCGATGGACGACGGTAGCAA
TTTCGAGGACGAATTTGATCCGATCCTGGCAGTCATTCGAAAGTCCCAAC
AGAAGGACGCAACAGCAAACGCGGCATCGTTTCGAGCGGGCGCCAGCGGA
ACAACGACATCCCAAGCCCAGTCGTTTCCCGTTCGTGGAGACGAAGAAGG
GGTGACTCCTCTGTCTTCCCCGCCCCCCGATAAAGACGCCTCCGAGACCC
ACCGGGGATCTCCTCGCACTCGCACTGCCTTCGCAGCTGGTTTTCTGTCC
ATTTTACCGGGAAGCATGCGCGCCCGCGCGGGGGATGTGATGGCGCATTC
TTCGGCGCAGATCTCCAGGTCTGCAACCGCTTTTCGCTCAGCGTTGGAAA
AAGGTGGCGCGCCGTCGGCACTGGATTCGCGGAAACGGAGGCATCCAGAC
CCGCTGCGGGCACCTGATGGCACCGCGGAGCTAGAAGAAGGAATGGTGGG
CAAGGGGGTTAGCGGGGGTAGGCGAGCGGCGGGAGGAGGGGAAGTGGATG
GCGTGCGGTTGGTGAGCGCGGACGAGCTGCTGAGTGAAGAAGAGCTCAAA
AGACTTCGGGAAGAGCAGGAGAGGTCGGAGCGATCGAAGGAGGAGTCCAT
TCGCCTTTTACGAGCGTCTGAAAGCAGCGTGGATTCGTCTGGCGCGAGGT
CGGGGGTAAGGGCGGACGATGCCGGTTTCGCAAATAATCTTCGAGGGAAG
CGTAGCGGCGGCGACGGCGCGTGTCTCGCCGGCATCGAGATGACGAATGC
AAGAGAGGACATCGAGCAGATCGAGCACCATATTTTGTCCCCTACGGATC
GCCCGCGTGGCGAGACTCTCGACAGCATGCTCGACGCGGACGCTGGCGCC
AAGAGGATCAGCTTGGAGCTCCCTGCGATGGACGACGGTAGCAATTTCGA
GGACGAATTTGATCCGATCCTGGCAGTCATTCGAAAGTCCCAACAGAAGG
ACGCAACAGCAAACGCGGCATCGTTTCGAGCGGGCGCCAGCGGAACAACG
ACATCCCAAGCCCAGTCGTTTCCCGTTCGTGGAGACGAAGAAGGGGTGAC
TCCTCTGTCTTCCCCGCCCCCCGATAAAGACGCCTCCGAGACCCACCGGG
GATCTCCTCGCACTCGCACTGCCTTCGCAGCTGGTTTTCTGTCCATTTTA
CCGGGAAGCATGCGCGCCCGCGCGGGGGATGTGATGGCGCATTCTTCGGC
GCAGATCTCCAGGTCTGCAACCGCTTTTCGCTCAGCGTTGGAAAAAGGTG
GCGCGCCGTCGGCACTGGATTCGCGGAAACGGAGGCATCCAGACCCGCTG
CGGGCACCTGATGGCACCGCGGAGCTAGAAGAAGGAATGGTGGGCAAGGG
GGTTAGCGGGGGTAGGCGAGCGGCGGGAGGAGGGGAAGTGGATGGCGTGC
GGTTGGTGAGCGCGGACGAGCTGCTGAGTGAAGAAGAGAGACAGCAACTG
GCGGCTTTCTCCGAACTGACCGGGGGATCGACGGTCGGGGCCTGTGCGTG
GCGAAGGCTCCGAAAAGGAATGATTGTCGTCGTGGAGACAGCAACTGGCG
GCTTTCTCCGAACTGACCGGGGGATCGACGGTCGGGGCCTGTGCGTGGCG
AAGGCTCCGAAAAGGAATGATTGTCGTCGTGGCCATTGCTCTGGTGGGCT
TGCCATTCTACCTGTGGAGATGGATGACGATCGCCTTAGCAGTTACCGAA
GAAGGAAACGCCGTTACCGCGATAGGGGCCGACAGAGCCTAACCATTGCT
CTGGTGGGCTTGCCATTCTACCTGTGGAGATGGATGACGATCGCCTTAGC
AGTTACCGAAGAAGGAAACGCCGTTACCGCGATAGGGGCCGACAGAGCCT
AA
back to top