mRNA_H-elongata_contig77223.15395.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77223.15395.1
Unique NamemRNA_H-elongata_contig77223.15395.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77223.15395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77223contigH-elongata_contig77223:362..832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.0943623-CDS-H-elongata_contig77223:361..8321622931177.0943623-CDS-H-elongata_contig77223:361..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77223 362..832 -
1691679729.8729713-CDS-H-elongata_contig77223:361..8321691679729.8729713-CDS-H-elongata_contig77223:361..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77223 362..832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77223.15395.1prot_H-elongata_contig77223.15395.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77223 362..832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77223.15395.1

>prot_H-elongata_contig77223.15395.1 ID=prot_H-elongata_contig77223.15395.1|Name=mRNA_H-elongata_contig77223.15395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
SLSTFGYGGGAIAAIDVNNLTLRGTNIFSGCSSNSSESEGGAIHLDSTTL
TAQGDVRFENCSASGKGGGLYMDSGSRLTVEEAASLSFCGCTAGSQAGDN
GGGMCSYGSIMTVGSNAKVSFENNSVPVEGDGGGLYAKRTHITVNNRSNI
SFINNYA
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mRNA from alignment at H-elongata_contig77223:362..832-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77223.15395.1 ID=mRNA_H-elongata_contig77223.15395.1|Name=mRNA_H-elongata_contig77223.15395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at H-elongata_contig77223:362..832- (Himanthalia elongata Himel1 dioecious)
TCTCTCTCGACTTTCGGCTACGGCGGAGGAGCTATAGCTGCAATAGATGT
GAATAATCTGACGCTGAGAGGAACTAATATTTTTTCGGGCTGCTCGTCAA
ATTCAAGCGAGTCCGAAGGAGGGGCAATACATCTCGATTCTACAACGCTC
ACGGCGCAGGGGGACGTGCGCTTTGAGAACTGCAGCGCTAGCGGCAAGGG
TGGTGGGTTATACATGGATTCCGGTTCGCGACTTACAGTTGAGGAGGCAG
CGTCACTCTCGTTCTGCGGCTGCACGGCGGGATCACAGGCTGGGGACAAT
GGTGGAGGTATGTGTTCTTACGGCTCCATCATGACGGTCGGCTCCAACGC
TAAGGTTTCGTTCGAGAATAATTCTGTGCCCGTTGAGGGCGATGGAGGCG
GCCTTTACGCCAAGAGAACTCATATCACCGTAAACAACAGATCCAATATA
TCCTTCATTAACAACTACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig77223:362..832-

>mRNA_H-elongata_contig77223.15395.1 ID=mRNA_H-elongata_contig77223.15395.1|Name=mRNA_H-elongata_contig77223.15395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig77223:362..832- (Himanthalia elongata Himel1 dioecious)
TCTCTCTCGACTTTCGGCTACGGCGGAGGAGCTATAGCTGCAATAGATGT
GAATAATCTGACGCTGAGAGGAACTAATATTTTTTCGGGCTGCTCGTCAA
ATTCAAGCGAGTCCGAAGGAGGGGCAATACATCTCGATTCTACAACGCTC
ACGGCGCAGGGGGACGTGCGCTTTGAGAACTGCAGCGCTAGCGGCAAGGG
TGGTGGGTTATACATGGATTCCGGTTCGCGACTTACAGTTGAGGAGGCAG
CGTCACTCTCGTTCTGCGGCTGCACGGCGGGATCACAGGCTGGGGACAAT
GGTGGAGGTATGTGTTCTTACGGCTCCATCATGACGGTCGGCTCCAACGC
TAAGGTTTCGTTCGAGAATAATTCTGTGCCCGTTGAGGGCGATGGAGGCG
GCCTTTACGCCAAGAGAACTCATATCACCGTAAACAACAGATCCAATATA
TCCTTCATTAACAACTACGCGTCTCTCTCGACTTTCGGCTACGGCGGAGG
AGCTATAGCTGCAATAGATGTGAATAATCTGACGCTGAGAGGAACTAATA
TTTTTTCGGGCTGCTCGTCAAATTCAAGCGAGTCCGAAGGAGGGGCAATA
CATCTCGATTCTACAACGCTCACGGCGCAGGGGGACGTGCGCTTTGAGAA
CTGCAGCGCTAGCGGCAAGGGTGGTGGGTTATACATGGATTCCGGTTCGC
GACTTACAGTTGAGGAGGCAGCGTCACTCTCGTTCTGCGGCTGCACGGCG
GGATCACAGGCTGGGGACAATGGTGGAGGTATGTGTTCTTACGGCTCCAT
CATGACGGTCGGCTCCAACGCTAAGGTTTCGTTCGAGAATAATTCTGTGC
CCGTTGAGGGCGATGGAGGCGGCCTTTACGCCAAGAGAACTCATATCACC
GTAAACAACAGATCCAATATATCCTTCATTAACAACTACGCG
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