mRNA_H-elongata_contig77202.15394.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77202.15394.1
Unique NamemRNA_H-elongata_contig77202.15394.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.490e-54
Identity = 93/112 (83.04%), Postives = 102/112 (91.07%), Query Frame = 1
Query:    4 RPALHSLWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAMQ 339
            RP+L SLW  ML +LRSL+VDFRPELRNCA+NTLFSAA+ NG  LSE +WKQF+ EVTFPL+ QVLESTNSASRGANTAVAPELKKGVRM+MHHTRDTDQKQWNETRVLAMQ
Sbjct: 1384 RPSLRSLWPTMLFQLRSLSVDFRPELRNCAVNTLFSAAVGNGDGLSESDWKQFLQEVTFPLIEQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQ 1495          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.160e-53
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    4 RPALHSLWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAMQ 339
            RP+L SLW  ML +LRSL+VDFRPELRNCA+NTLFSAA+ NG  LSE +WKQF+ EVTFPL+ QVLESTNSASRGANTAVAPELKKGVRM+MHHTRDTDQKQWNETRVL MQ
Sbjct:  457 RPSLRSLWPTMLFQLRSLSVDFRPELRNCAVNTLFSAAVGNGDGLSESDWKQFLQEVTFPLIEQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLMMQ 568          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: A0A835YQS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS4_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.520e-36
Identity = 68/106 (64.15%), Postives = 87/106 (82.08%), Query Frame = 1
Query:   22 LWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAMQ 339
            +W+ ML EL  LA D RPE+RNCA+NTLFSA I NGS  S+++W+Q++LEVTFPL+G+VL  T +AS   +T VAPEL+KGVR +MHH+RDTD+KQW+ET VLAMQ
Sbjct: 1169 MWSAMLTELSHLAKDQRPEVRNCAINTLFSALIGNGSTFSDQQWQQYLLEVTFPLLGEVLCCTRAASH--DTGVAPELRKGVRAVMHHSRDTDRKQWSETSVLAMQ 1272          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: L8H3Z7_ACACA (Protein MON2 homolog n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3Z7_ACACA)

HSP 1 Score: 96.7 bits (239), Expect = 6.670e-21
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 DRPALHSLWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGA-NTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAMQ--VQVL 351
            D    + LW     EL+ L VD R E+RNCA+ TLF     +GS L  + W   + ++ FPLM ++   + SA +   +T +  E  K V MM+HHTR+T++KQWNET+VLA+Q  VQV+
Sbjct: 1091 DSTTSNKLWLSTYHELKQLCVDARTEVRNCAIQTLFKTLSTHGSLLEHDIWPSVIAQILFPLMNEIRNLSASAGKNRIDTELGKEGGKSVIMMVHHTRNTEEKQWNETQVLALQGIVQVM 1210          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: A0A4V1SL55_9BACT (Mon2_C domain-containing protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4V1SL55_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 1.650e-19
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   10 ALHSLWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAM 336
            A HSL   M   L  L++D RPE+R+CA++TLFSA   N +++S   W +    +  PL  +    +  A +    AVAPELK+G++M +HH+RDT  KQW+ETRVL +
Sbjct:  156 AAHSLIEVMFRRLYQLSLDSRPEIRHCAVSTLFSALAGNAAQMSGPLWSRCFDAIVAPLFAKCAARSQLALKINEQAVAPELKRGMKMAVHHSRDTAAKQWSETRVLIL 264          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: A0A163MP22_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163MP22_ABSGL)

HSP 1 Score: 84.3 bits (207), Expect = 1.390e-16
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   13 LHSLWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPEL---KKGVRMMMHHTRDTDQKQWNETRVLAM 336
            L++LW  +LL+L  + VD RPE+RN A+ TLF   + NG+ L    W+  + +V FPL+  +  ++ +A+     A +P     ++    M+HH+RDT  KQW+ET+VL +
Sbjct: 1074 LNTLWMLLLLQLSKVCVDARPEVRNGAIQTLFRTIMMNGNVLGSNLWQACIWQVLFPLLDAIKAASKAAAATGEAASSPSSGNEREASGFMLHHSRDTADKQWDETKVLVL 1184          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: A0A2V3J1Q5_9FLOR (Protein MON2-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Q5_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 3.510e-16
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   22 LWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAM 336
            LW  +L  L+ +++D RPE+RN A+ TL  A   + SRLS   W + + +   PL+ +V++  N  + G       + +  V++++HH+RDT +KQWNETRVLA+
Sbjct:  921 LWVSLLQVLKEVSMDDRPEVRNSAVKTLTGALSAHSSRLSAIAWNRCVAKALLPLLEEVMQGGNG-NPGEEAPTLSKSRSDVQLLLHHSRDTPRKQWNETRVLAL 1024          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: R7QQH4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQH4_CHOCR)

HSP 1 Score: 83.2 bits (204), Expect = 3.520e-16
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   22 LWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAM 336
            LW ++   L+ ++ D RPE+RNCA+ TL  +   +G +LS   WK  +     PL+ +V+      S+    +   + +  V++++HH+RDT +KQWNETRVLA+
Sbjct:  984 LWIQLFETLKGISTDDRPEIRNCAVKTLTGSLSTHGLQLSAMAWKGCVAHALLPLLEEVMRGRAHTSQSDEISSLGKSRGDVQLLLHHSRDTPRKQWNETRVLAL 1088          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: A0A7S4Q613_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q613_9DINO)

HSP 1 Score: 80.5 bits (197), Expect = 3.690e-16
Identity = 36/109 (33.03%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   13 LHSLWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAMQ 339
            +  LW ++ + LR+LAVD RPE+RNCA+ +L SA + +G ++    +++ + ++   ++ ++ E+   A  G    V  E  +   +++HH+RDT +KQW+ET VL ++
Sbjct:   77 VEELWVQIFMHLRALAVDARPEVRNCAVKSLTSALLSHGRKVGTACYRRCLQDILIEVLAEIQEAAQRARNGEGPGV--ERTRSESLIVHHSRDTPEKQWDETMVLGVE 183          
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Match: A0A2P6V8U0_9CHLO (Protein MON2 homolog n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V8U0_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.220e-15
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   34 MLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEEWKQFMLEVTFPLM--GQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTDQKQWNETRVLAM 336
            + L L++++ D RPE+RN  + TLF+  +  G RLS   W+Q + E+ FPL+    ++ +T S     +  +     K VRMM+HH+R+++QKQW+ET V+A+
Sbjct:  995 IFLALQAVSQDARPEIRNSGVRTLFAVVVNQGPRLSRALWEQCLWEMLFPLLRHAYLMSATASRDEAESMLLGQSRGKEVRMMVHHSRNSEQKQWDETVVIAL 1097          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77202.15394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQH8_ECTSI2.490e-5483.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX0_9PHAE1.160e-5382.14Mon2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YQS4_9STRA1.520e-3664.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8H3Z7_ACACA6.670e-2142.50Protein MON2 homolog n=1 Tax=Acanthamoeba castella... [more]
A0A4V1SL55_9BACT1.650e-1943.12Mon2_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A163MP22_ABSGL1.390e-1636.94Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A2V3J1Q5_9FLOR3.510e-1638.10Protein MON2-like n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QQH4_CHOCR3.520e-1636.19Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S4Q613_9DINO3.690e-1633.03Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A2P6V8U0_9CHLO1.220e-1537.86Protein MON2 homolog n=1 Tax=Micractinium conductr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77202contigH-elongata_contig77202:742..1817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.4e-46
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-10_005690.1
Exons3
Model size354
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77202.15394.1prot_H-elongata_contig77202.15394.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77202 742..1817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.0068073-CDS-H-elongata_contig77202:741..9001622931177.0068073-CDS-H-elongata_contig77202:741..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77202 742..900 -
1691679729.8394961-CDS-H-elongata_contig77202:741..9001691679729.8394961-CDS-H-elongata_contig77202:741..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77202 742..900 -
1622931177.0245109-CDS-H-elongata_contig77202:1169..12861622931177.0245109-CDS-H-elongata_contig77202:1169..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77202 1170..1286 -
1691679729.8516257-CDS-H-elongata_contig77202:1169..12861691679729.8516257-CDS-H-elongata_contig77202:1169..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77202 1170..1286 -
1622931177.0430994-CDS-H-elongata_contig77202:1739..18171622931177.0430994-CDS-H-elongata_contig77202:1739..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77202 1740..1817 -
1691679729.861696-CDS-H-elongata_contig77202:1739..18171691679729.861696-CDS-H-elongata_contig77202:1739..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77202 1740..1817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77202.15394.1

>prot_H-elongata_contig77202.15394.1 ID=prot_H-elongata_contig77202.15394.1|Name=mRNA_H-elongata_contig77202.15394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
DRPALHSLWARMLLELRSLAVDFRPELRNCALNTLFSAAIRNGSRLSEEE
WKQFMLEVTFPLMGQVLESTNSASRGANTAVAPELKKGVRMMMHHTRDTD
QKQWNETRVLAMQVQVLL
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mRNA from alignment at H-elongata_contig77202:742..1817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77202.15394.1 ID=mRNA_H-elongata_contig77202.15394.1|Name=mRNA_H-elongata_contig77202.15394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1076bp|location=Sequence derived from alignment at H-elongata_contig77202:742..1817- (Himanthalia elongata Himel1 dioecious)
GATCGTCCTGCTCTGCACTCCTTGTGGGCCAGGATGCTCTTGGAGCTCAG GAGCCTGGCTGTCGATTTTAGGCCAGAGGTAATAATTGCTCGAATCGTGT TTTGTACTGATTACAGTGTATACTGAACAGTACTGTATAATCAGTAGTAA CGAAGTGTTGTTTCACTTAAAATTTAATGTATGCGTGTGTCGTACTGTGC TAGAGGTATCTTGTAACATTGCGAGTGCTCTCTAGAGTCTCGAAAAAATA TCCTGAGATTAAGAAACGAAGGCAGATATCCGTCACGACTCGCAGGTGTC CCGGACAGACACTGGAACATACACTGGAACCTGCGCGCTCAGCTTTCGCG TCCCCTCTCCCACCCTCTCGCTGCTTTCATCCTAATGACGTCATCATCAT CTTAATGACGTCATCATCACGATCATCATCATCATCATCATCTTAATGAC GTCATCATCACGATCATCATCAACTTAATGACGTTATCATCATCATCATC ATCATCATCACCATCATATTGACGAGTGCAGCTTCGAAACTGTGCGTTGA ACACCCTATTCTCTGCCGCCATAAGGAATGGATCTCGTCTCAGCGAGGAG GAATGGAAGCAGTTCATGCTGGAGGTGACATTTCCCCTCATGGGCCAAGT AAGTCCTTCCTTCCTTAAGACTTAAAACAATAATAAGAAAAAGGTAGTCC TTGCCATATAATCATCTCCAAAGCGCGCAGGGATTCAACTCCCCGGGGTC TGTGAAATCAAGGGGGCCCCGTTAATATAATTTAATGTATTATCTACAGT ACGACGGACCAAGCTGTCTTGCCCGATATCACCGTCGTATTCCCCTATGC GTTCGGAGGATCCGTGGAATGATCCGTGGAATGATCCGTGGGGTAATCCG GGGAATGATCCGCGAAGGTTCTGGAGAGCACCAACAGCGCGAGCAGAGGG GCCAATACCGCCGTTGCTCCTGAGCTGAAGAAGGGAGTCCGAATGATGAT GCATCACACCAGGGACACGGACCAGAAGCAGTGGAACGAGACTCGCGTGC TCGCCATGCAGGTACAAGTGTTGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig77202:742..1817-

>mRNA_H-elongata_contig77202.15394.1 ID=mRNA_H-elongata_contig77202.15394.1|Name=mRNA_H-elongata_contig77202.15394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig77202:742..1817- (Himanthalia elongata Himel1 dioecious)
GATCGTCCTGCTCTGCACTCCTTGTGGGCCAGGATGCTCTTGGAGCTCAG
GAGCCTGGCTGTCGATTTTAGGCCAGAGGATCGTCCTGCTCTGCACTCCT
TGTGGGCCAGGATGCTCTTGGAGCTCAGGAGCCTGGCTGTCGATTTTAGG
CCAGAGCTTCGAAACTGTGCGTTGAACACCCTATTCTCTGCCGCCATAAG
GAATGGATCTCGTCTCAGCGAGGAGGAATGGAAGCAGTTCATGCTGGAGG
TGACATTTCCCCTCATGGGCCAACTTCGAAACTGTGCGTTGAACACCCTA
TTCTCTGCCGCCATAAGGAATGGATCTCGTCTCAGCGAGGAGGAATGGAA
GCAGTTCATGCTGGAGGTGACATTTCCCCTCATGGGCCAAGTTCTGGAGA
GCACCAACAGCGCGAGCAGAGGGGCCAATACCGCCGTTGCTCCTGAGCTG
AAGAAGGGAGTCCGAATGATGATGCATCACACCAGGGACACGGACCAGAA
GCAGTGGAACGAGACTCGCGTGCTCGCCATGCAGGTACAAGTGTTGCTCG
TTCTGGAGAGCACCAACAGCGCGAGCAGAGGGGCCAATACCGCCGTTGCT
CCTGAGCTGAAGAAGGGAGTCCGAATGATGATGCATCACACCAGGGACAC
GGACCAGAAGCAGTGGAACGAGACTCGCGTGCTCGCCATGCAGGTACAAG
TGTTGCTC
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