prot_H-elongata_contig7719.15392.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig7719.15392.1
Unique Name	prot_H-elongata_contig7719.15392.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	340

Homology

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BLAST of mRNA_H-elongata_contig7719.15392.1 vs. uniprot
Match: D7G4A8_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A8_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 4.680e-55
Identity = 153/364 (42.03%), Postives = 187/364 (51.37%), Query Frame = 0

Query:   14 WASTVNVPWFVAGTGAGVPAGIAIGSSLSNNVQGLTLVTTAAGFLGGVTADLISAKVSSHLEHS-----------FTAYDVFTRGVGPACLVLVVLSRGLRTEPSVAVKPVAALALIALLLEPLFSAYVFSSAVGANNVAATAGPPAITVAARAFRGLARRVRRRSSPAASAAVAAASA-------------------------VSRVRWLTAGVQVALWAAVVVAYARLSLRRLSGLSANRPN--VRSYLTALGILASKKRGSGGWVRLGKGGTALGCTPWGGGGVVAGKFSMGGNQSRARMSSLLGSLYERF---------ARRGPGGEANVFDSSGGAHSGPPFERGEVTIRGIRCAGLDA 330
            WAS++N+PWF+AG G GVPA  A+G+  + N + L+L TT  G LGGV AD +S  +S  L  +           FT YDV T+GVGPACL+LVVLSR +R+EPSVAVKP AA+AL ALLLEPLFSAYV                       R+  GLAR +  R  P                                    V+R RWLTAG Q+ LWAAVV+AYA +SLR    LS   P   V  Y++AL  LA+KKRG+GGWVR+ + GT                         AR + LLGSLYE            R  P  EA        ++ GPPFERGEVT+R I C+GLDA
Sbjct:   18 WASSLNIPWFLAGAGVGVPA--AVGTVTTGNSKLLSLATTLGGVLGGVAADRLSTTISESLAGNDVGXXXXXGCEFTCYDVLTKGVGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXXXXXTRS--GLARLLLLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLR----LSRGPPGKTVGGYMSALRSLAAKKRGTGGWVRIDQWGTGXXX-------XXXXXXXXXXXXXXARANGLLGSLYETLMGXXXXXXXGRICP--EAMALCQHQKSYDGPPFERGEVTVRSIYCSGLDA 364

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig7719.15392.1 vs. uniprot

BLAST of mRNA_H-elongata_contig7719.15392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G4A8_ECTSI	4.680e-55	42.03	C2 domain-containing protein n=2 Tax=Ectocarpus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 48..66
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 210..339
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 99..109
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 187..209
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..41
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..47
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 78..98
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 133..186
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 67..77
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 110..132
None	No IPR available	TMHMM	TMhelix		coord: 47..68
None	No IPR available	TMHMM	TMhelix		coord: 114..136
None	No IPR available	TMHMM	TMhelix		coord: 187..209
None	No IPR available	TMHMM	TMhelix		coord: 83..102
None	No IPR available	TMHMM	TMhelix		coord: 20..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig7719	contig	H-elongata_contig7719:2687..6551 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig7719.15392.1	mRNA_H-elongata_contig7719.15392.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig7719 2684..7362 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig7719.15392.1 ID=prot_H-elongata_contig7719.15392.1|Name=mRNA_H-elongata_contig7719.15392.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
MCETLAALVSVMTWASTVNVPWFVAGTGAGVPAGIAIGSSLSNNVQGLTL
VTTAAGFLGGVTADLISAKVSSHLEHSFTAYDVFTRGVGPACLVLVVLSR
GLRTEPSVAVKPVAALALIALLLEPLFSAYVFSSAVGANNVAATAGPPAI
TVAARAFRGLARRVRRRSSPAASAAVAAASAVSRVRWLTAGVQVALWAAV
VVAYARLSLRRLSGLSANRPNVRSYLTALGILASKKRGSGGWVRLGKGGT
ALGCTPWGGGGVVAGKFSMGGNQSRARMSSLLGSLYERFARRGPGGEANV
FDSSGGAHSGPPFERGEVTIRGIRCAGLDAGPKRRSRRG*