mRNA_H-elongata_contig7709.15383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7709.15383.1
Unique NamemRNA_H-elongata_contig7709.15383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 7.610e-42
Identity = 78/129 (60.47%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
            +TWCGKVYS GQV HDPERL GLA +RRP T GELM+FLQA NW+   LPRMAEVV P R  LE+H  G+   TKR A N+AIA  A TP LV AW  AQ  VA  + L HP     V M+PDAS E W
Sbjct:  953 ITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHW 1081          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.420e-41
Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTEL 384
            + WCGKVYSGGQV HDP RL GLA++RRP T GELM+ LQA NW+   LPR+AEVV P R++LEEH A +   TKR ASN+AI + AWT  + +AW  AQ  VA+ + L HP E + V M+PDAS  +
Sbjct:  781 IKWCGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWTAGMAKAWTSAQDLVAHAVALSHPKEGFAVLMFPDASVSI 908          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.600e-35
Identity = 67/129 (51.94%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
            + WCGKVYSGGQV  DPERL GL ++RRP T G+LM+FLQA  W+   L R+AEV+ P R +LE + A +   TK  A N+AI   AWT  +V AW  AQ  VA+ + L HP + + V M+PDAS E W
Sbjct:  606 IRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPKDGFAVLMFPDASEEHW 734          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.210e-16
Identity = 48/131 (36.64%), Postives = 66/131 (50.38%), Query Frame = 1
Query:    1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELWEV 393
            + WCGK+ SG  + HDPERL  LAN+  P TV  L +FL A NW+   L   A + AP  + LE+      +  KR   N   A   W+P+L   +   ++ +     L HP ED  V +  DAS + W V
Sbjct:  563 VLWCGKMVSGTDIQHDPERLSALANLPPPPTVAALQQFLCAVNWVRDSLIDYARIAAPLYECLEQQM---RVIGKR-NKNGLHAALEWSPELDACFREVKLLLLRAAPLAHPAEDAAVCLLTDASADGWSV 689          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A0G4J2M7_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2M7_PLABS)

HSP 1 Score: 65.9 bits (159), Expect = 1.950e-10
Identity = 33/129 (25.58%), Postives = 63/129 (48.84%), Query Frame = 1
Query:    1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
            + WCGK+YSG  + HDPER+  L ++  P+TV +L + + A  WM   +P    ++ P ++++               +N+ +     T + +RA  +  + +A      +P +D+   ++ DAS   W
Sbjct:   59 LVWCGKIYSGNGIRHDPERIAALTSMPEPKTVKDLQQLMWAVGWMRTTIPDYPYIIEPLQEVVGR-------------ANEELKRTKSTFEKLRAVLVEHVQLA------YPKKDFQTCLFTDASEFAW 168          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: H3H8C5_PHYRM (RNA-directed DNA polymerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8C5_PHYRM)

HSP 1 Score: 67.0 bits (162), Expect = 2.480e-10
Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 1
Query:    7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
            WCGK++SG  + HDP R+ GL ++  P T  +L +FL AA W+   +   + V+ P   +LE      G    TKR A+   ++   W      A+  A+  +A T +L  P +   + ++ DAS   W
Sbjct:  735 WCGKIFSGEGIAHDPARVSGLQSLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQQVGR---TKRLAAGFTLS---WNDGDKAAFTTARNLLATTQMLHFPDDSASLCVFSDASERGW 857          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6A4BBJ8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BBJ8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.570e-10
Identity = 40/129 (31.01%), Postives = 63/129 (48.84%), Query Frame = 1
Query:    7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
            WCGK++SG  + HDP R+ GL  +  P T  +L +FL AA W+   +   + V+ P   +LE      G    TKR A+   ++   W      A+  A+  +A T +L  P +   + ++ DAS   W
Sbjct:  108 WCGKIFSGEGIAHDPARVSGLQPLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQQVGR---TKRLAAGFTLS---WNDDDKAAFTTARNLLATTQLLHFPDDSASLCVFSDASERGW 230          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A2P4Y2Z2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2Z2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.780e-10
Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 1
Query:    7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGV 354
            WCG+++SG  V HDPERL GL  +  P T  +L +FL A  WM   L   + V+ P    LE      G    TKR A+  AI    WT     A+  A+  +  +  L +P ++  +
Sbjct:  139 WCGRLFSGVGVRHDPERLSGLHQLPLPSTAADLQQFLCATGWMRDSLMDYSRVMQPLHDKLEAVLKVVGR---TKRLAAGAAIP---WTTADTNAFETARQLLTTSKTLHYPSQNASI 250          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A2P4WWE8_9STRA (RT_RNaseH domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWE8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.780e-8
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 1
Query:    7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQI--------FVANTMVLLHPMEDYGVQMYPDASTELW 387
            WCG+++SG  V HDPERL GL  +    T  +L +FL A  WM   L   + V+ P    LE      G    TKR A+  AI    WT     A+  A+          +  +  L +P ++  + +  DAS   W
Sbjct:  256 WCGQLFSGVGVRHDPERLSGLHQLPLTSTAADLQQFLCATGWMRGSLMDYSRVIQPLHDKLEAVLKVVGR---TKRLAAGAAIT---WTAADSTAFETARXXXXXXXXQLLTTSQTLHYPSQNASIVLMSDASDRGW 386          
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A225VC65_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VC65_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.160e-6
Identity = 36/131 (27.48%), Postives = 63/131 (48.09%), Query Frame = 1
Query:    1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHIC--TKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
            + WCG+V+SG  + HDP R+  L  +  P T  +L +FL AA WM + +   A  +      LE   A   +C  TK+ A+   +  GA        ++ A+  ++++ +L    +   + ++ DAS   W
Sbjct:  106 IRWCGRVFSGVGIRHDPARIEALQALPLPVTAADLQQFLCAAGWMRVTIMDFARTMGLLHDKLE---AVLQVCGRTKKLAAGVTLEWGAAEQD---EFDGAKQLLSSSQLLYFRKDTAVIAVFSDASDLGW 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE7.610e-4260.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E0_9PHAE2.420e-4157.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE5.600e-3551.94CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6A3L091_9STRA2.210e-1636.64RNA-directed DNA polymerase n=6 Tax=Phytophthora T... [more]
A0A0G4J2M7_PLABS1.950e-1025.58Reverse transcriptase domain-containing protein n=... [more]
H3H8C5_PHYRM2.480e-1031.01RNA-directed DNA polymerase n=1 Tax=Phytophthora r... [more]
A0A6A4BBJ8_9STRA4.570e-1031.01Uncharacterized protein n=5 Tax=Phytophthora fraga... [more]
A0A2P4Y2Z2_9STRA7.780e-1033.90Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A2P4WWE8_9STRA1.780e-831.39RT_RNaseH domain-containing protein n=1 Tax=Phytop... [more]
A0A225VC65_9STRA4.160e-627.48Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7709contigH-elongata_contig7709:5087..5479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog67593.Physo139110
EggNOG free text desc.transposition
EggNOG OGs2QT1S@2759,COG2801@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.5361202-CDS-H-elongata_contig7709:5086..54791622931175.5361202-CDS-H-elongata_contig7709:5086..5479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7709 5087..5479 +
1691679729.2270381-CDS-H-elongata_contig7709:5086..54791691679729.2270381-CDS-H-elongata_contig7709:5086..5479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7709 5087..5479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7709.15383.1prot_H-elongata_contig7709.15383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7709 5087..5479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7709.15383.1

>prot_H-elongata_contig7709.15383.1 ID=prot_H-elongata_contig7709.15383.1|Name=mRNA_H-elongata_contig7709.15383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLP
RMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQ
IFVANTMVLLHPMEDYGVQMYPDASTELWEV
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mRNA from alignment at H-elongata_contig7709:5087..5479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7709.15383.1 ID=mRNA_H-elongata_contig7709.15383.1|Name=mRNA_H-elongata_contig7709.15383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig7709:5087..5479+ (Himanthalia elongata Himel1 dioecious)
ATGACTTGGTGTGGCAAGGTTTATTCTGGTGGACAGGTGACGCATGATCC GGAGCGATTATGTGGGTTAGCGAACATAAGACGCCCGCGGACGGTGGGGG AGCTAATGCGATTTCTGCAAGCGGCTAACTGGATGTGGATTTTTTTACCG CGCATGGCTGAAGTGGTCGCACCCTTTCGTCAGATGTTGGAAGAGCATTC TGCGGGTAGTCATATATGTACTAAGCGGTTTGCCTCCAACAAGGCGATCG CAAATGGAGCTTGGACTCCAAAATTGGTGAGAGCTTGGAACATCGCGCAG ATATTTGTAGCGAATACCATGGTTTTATTGCATCCCATGGAGGATTATGG AGTGCAAATGTATCCTGATGCCTCAACTGAGCTTTGGGAAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig7709:5087..5479+

>mRNA_H-elongata_contig7709.15383.1 ID=mRNA_H-elongata_contig7709.15383.1|Name=mRNA_H-elongata_contig7709.15383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig7709:5087..5479+ (Himanthalia elongata Himel1 dioecious)
ATGACTTGGTGTGGCAAGGTTTATTCTGGTGGACAGGTGACGCATGATCC
GGAGCGATTATGTGGGTTAGCGAACATAAGACGCCCGCGGACGGTGGGGG
AGCTAATGCGATTTCTGCAAGCGGCTAACTGGATGTGGATTTTTTTACCG
CGCATGGCTGAAGTGGTCGCACCCTTTCGTCAGATGTTGGAAGAGCATTC
TGCGGGTAGTCATATATGTACTAAGCGGTTTGCCTCCAACAAGGCGATCG
CAAATGGAGCTTGGACTCCAAAATTGGTGAGAGCTTGGAACATCGCGCAG
ATATTTGTAGCGAATACCATGGTTTTATTGCATCCCATGGAGGATTATGG
AGTGCAAATGTATCCTGATGCCTCAACTGAGCTTTGGGAAGTTATGACTT
GGTGTGGCAAGGTTTATTCTGGTGGACAGGTGACGCATGATCCGGAGCGA
TTATGTGGGTTAGCGAACATAAGACGCCCGCGGACGGTGGGGGAGCTAAT
GCGATTTCTGCAAGCGGCTAACTGGATGTGGATTTTTTTACCGCGCATGG
CTGAAGTGGTCGCACCCTTTCGTCAGATGTTGGAAGAGCATTCTGCGGGT
AGTCATATATGTACTAAGCGGTTTGCCTCCAACAAGGCGATCGCAAATGG
AGCTTGGACTCCAAAATTGGTGAGAGCTTGGAACATCGCGCAGATATTTG
TAGCGAATACCATGGTTTTATTGCATCCCATGGAGGATTATGGAGTGCAA
ATGTATCCTGATGCCTCAACTGAGCTTTGGGAAGTT
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