mRNA_H-elongata_contig77055.15380.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A6H5J663_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J663_9PHAE) HSP 1 Score: 278 bits (711), Expect = 2.800e-91 Identity = 136/169 (80.47%), Postives = 154/169 (91.12%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
KDLLS+L PLAPKLAWI SRSAGVD LFPEL+E+D + LTNARGLFSSSLAE+ +LSCLYFAKDVDRWKRNQR+RKW+ + V+E+ G+TLGV+GYGDIGQA A KAKAMGMKI+AQRRRPELSRGDGVADEVLG GQVG+VIAKSDY++VAAALTPE+ GMVGAAEL
Sbjct: 73 KKDLLSRLFPLAPKLAWIHSRSAGVDSALFPELIESDRVSLTNARGLFSSSLAEHAVLSCLYFAKDVDRWKRNQRDRKWDQFCVSEVFGTTLGVVGYGDIGQAAAVKAKAMGMKIIAQRRRPELSRGDGVADEVLGAGQVGEVIAKSDYILVAAALTPETTGMVGAAEL 241
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A6H5KFZ0_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFZ0_9PHAE) HSP 1 Score: 252 bits (643), Expect = 5.430e-81 Identity = 125/169 (73.96%), Postives = 143/169 (84.62%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
KDLLSQL PLAPKLAW+ SR GVD LFP LVE D + LTNARGLF+S+LAE+ +LSCLYFAKDVDRWKRNQ+ RKWE Y V E+ +TLG+IGYGDIG+A A KAKAMGMKI+AQRRRPELS GDG+AD+V G GQVGDVIA+SDY++VAAALTP + GMVGA EL
Sbjct: 72 TKDLLSQLFPLAPKLAWVHSRLVGVDAALFPALVEADHVSLTNARGLFASALAEHVVLSCLYFAKDVDRWKRNQKCRKWERYHVAEVSRTTLGIIGYGDIGRAAAVKAKAMGMKIIAQRRRPELSIGDGIADQVFGAGQVGDVIAQSDYILVAAALTPATMGMVGAEEL 240
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A835Z904_9STRA (D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z904_9STRA) HSP 1 Score: 211 bits (536), Expect = 5.820e-65 Identity = 108/169 (63.91%), Postives = 129/169 (76.33%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
+ L+S L P P L W+ SR AGVD +LFPELV + +PLTNARGLFSS+LAEY L+CLYFAKDVDRWK QR+R WE + V EI G TLGV+GYGDIGQ+ AR AKA+GM+++AQRR DGVADE G VGDV+A+SDYV VAAALTPE++GM+GAA L
Sbjct: 63 GRALISSLWPHMPNLKWMHSRFAGVDHVLFPELVASR-VPLTNARGLFSSALAEYVALACLYFAKDVDRWKAQQRDRVWEKFVVQEIRGQTLGVLGYGDIGQSAARLAKALGMRVIAQRRNAAAPP-DGVADETFGPDGVGDVVARSDYVCVAAALTPETRGMLGAAAL 229
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: I2CQU9_NANGC (D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQU9_NANGC) HSP 1 Score: 192 bits (489), Expect = 5.500e-57 Identity = 96/169 (56.80%), Postives = 127/169 (75.15%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
++LLS L P L WI AGVD +LFP+L+ + IPLTNARGLFSSSLAEY +L+ YFAKD+ R + E+KWE Y V E+ G+TLG++GYGDIGQAC R AKA GM++VA +RRPEL DG+AD VLG ++ ++IA+SDY++VAAALTP+++G++ A EL
Sbjct: 143 GRELLSSLWPSFTNLKWIHCIFAGVDHVLFPDLIHSS-IPLTNARGLFSSSLAEYGVLAMSYFAKDLPRLLAQKAEKKWERYCVEELRGATLGIVGYGDIGQACGRLAKAFGMRVVALKRRPELGGKDGIADAVLGREKIDELIAQSDYLIVAAALTPDTRGIISAKEL 310
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A7X2TRU1_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7X2TRU1_9BACT) HSP 1 Score: 187 bits (476), Expect = 5.250e-56 Identity = 87/165 (52.73%), Postives = 123/165 (74.55%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVG 495
+ LL QL P+AP+ W+ SR+AG+D +LFPEL+E+ +PLTN G+FS SL E+ + LYFAKD R RNQ +WE + V E+ G T+G++GYGDIG+A A + KA+GM+++A RRRPE S+GDG+ DEV G ++ D++++SDYVV AA LTPE+KG++G
Sbjct: 56 TRALLQQLWPIAPRARWVHSRAAGLDGVLFPELIESP-VPLTNGSGVFSRSLGEFVAAAALYFAKDFRRMIRNQAAGRWEQFDVEEVYGKTMGIVGYGDIGRAAAERGKALGMRVIALRRRPEKSQGDGLIDEVFGPDRLLDLMSESDYVVAAAPLTPETKGLIG 219
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A6U0SYG0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0SYG0_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.710e-52 Identity = 90/168 (53.57%), Postives = 118/168 (70.24%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQ--VGDVIAKSDYVVVAAALTPESKGMVGA 498
K+++ LL PKL WI SR AGVD L P+LV +PLTNARG+FSSSLAEY L +C +F+K ++NQ +RKWE TV E+ G+T+GV G+GDIG++CA KA GM+I+AQRRRPEL GD + DE G GQ + + A+SDY VVAA LTP+++ M+ A
Sbjct: 59 GKEIVDTLLDRMPKLEWIHSRWAGVDSFLTPKLVGRQDVPLTNARGVFSSSLAEYTLFACGFFSKRARELQQNQADRKWEKLTVKELRGATMGVAGFGDIGRSCAVLGKAYGMRILAQRRRPELCEGDPIVDESFGQGQEQLCQMAAESDYFVVAAPLTPQTRQMISA 226
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A4P5U6A0_9BURK (2-hydroxyacid dehydrogenase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4P5U6A0_9BURK) HSP 1 Score: 176 bits (447), Expect = 1.200e-51 Identity = 81/169 (47.93%), Postives = 125/169 (73.96%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
++ L+ Q+ +APKL W+ +R+AG+D LLFP LV++ +PLTN+ G++S SL E+ + L+FAKD R RNQ +WE + V E+ G T+G++GYGDIG+A A +AK +GM+++A RR+P+ SR D + DEV+G + +++ +SDYVVVAA LTP+++G+VGAA +
Sbjct: 56 SRSLVQQVFAMAPKLRWVHTRAAGLDTLLFPALVDSP-VPLTNSSGVYSRSLGEFVAAAMLFFAKDFRRMLRNQAAGRWEQFDVEELHGRTMGIVGYGDIGRAAAAQAKGLGMQVIALRRQPDKSRADSLVDEVMGQSDILELMRRSDYVVVAAPLTPDTRGLVGAAAI 223
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: UPI0015D6F199 (D-2-hydroxyacid dehydrogenase n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0015D6F199) HSP 1 Score: 171 bits (432), Expect = 2.030e-49 Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 1
Query: 1 NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
K L +LPLA L W+ R AG+D LLFP LV + + +TN+RG++S SL E+ + L+FAKD+ R R+Q +W +T+ E+ G+T+G++GYGDIG+ACA +A AMGM+++AQRRRPE + GD + D G + D+I + DYVV AA LTPE+KGM+GA E+
Sbjct: 54 RKADLEAILPLAAHLRWMHVRWAGLDSLLFPALVASP-VVITNSRGVYSQSLGEFVMAGALFFAKDIRRLLRDQEGHRWSPFTMLELRGATMGIVGYGDIGRACATRAHAMGMRVLAQRRRPERASGDPLLDRAYGPDGLLDMIRECDYVVAAAPLTPETKGMIGAREI 221
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A482RWC2_9ARCH (D-2-hydroxyacid dehydrogenase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWC2_9ARCH) HSP 1 Score: 168 bits (426), Expect = 3.680e-49 Identity = 83/165 (50.30%), Postives = 114/165 (69.09%), Query Frame = 1
Query: 13 LSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
+S+++ P L W+ S +AGVD LL PELV ND I LTNARG+F+ SLAEY +L+C YFAKD+ R KR Q W+ + VT++ G T+G++GYG+IG CAR AKA GMK++A RR PE S D + D + G Q+ ++ +SD++V+ ALT E+KG V A L
Sbjct: 1 MSEIINEMPFLVWVHSITAGVDHLLCPELVNNDEITLTNARGVFAGSLAEYVMLACSYFAKDIPRMKRQQASSVWDKFMVTDLRGKTMGIVGYGNIGLHCARLAKAYGMKVLALRRNPEQSVHDKLVDTLYGPSQLDVLMKESDFLVICMALTSETKGYVDAQHL 165
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Match: A0A7V2HCJ3_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2HCJ3_9BACT) HSP 1 Score: 171 bits (433), Expect = 5.690e-49 Identity = 89/178 (50.00%), Postives = 119/178 (66.85%), Query Frame = 1
Query: 10 LLSQLLPLAP------------KLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSSLAEYCLLSCLYFAKDVDRWKRNQRERKWETYTVTEILGSTLGVIGYGDIGQACARKAKAMGMKIVAQRRRPELSRGDGVADEVLGDGQVGDVIAKSDYVVVAAALTPESKGMVGAAEL 507
LL+ ++P AP KL W+ S + GV+ +LFPELVE+ +PLTNARG FS SL E+ L L+F+K +D +R QRE +W V E+ G+TLG++ YG IGQA AR AKA GM + A RRRPELS GD + D V G G + +++A SD+V V + LTPE++G+VGAAEL
Sbjct: 101 LLNGMMPAAPALFRDVFLKTSRKLEWVHSLAVGVEGVLFPELVESP-VPLTNARGAFSRSLGEFVLCGALFFSKKIDEMRRQQREHRWVNMDVGELHGATLGIVSYGSIGQAAARLAKAFGMTVWAMRRRPELSAGDPLVDRVFGPGGLKEMLAGSDFVAVCSPLTPETRGLVGAAEL 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77055.15380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77055.15380.1 >prot_H-elongata_contig77055.15380.1 ID=prot_H-elongata_contig77055.15380.1|Name=mRNA_H-elongata_contig77055.15380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp NKDLLSQLLPLAPKLAWISSRSAGVDKLLFPELVENDGIPLTNARGLFSSback to top mRNA from alignment at H-elongata_contig77055:1749..2940+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77055.15380.1 ID=mRNA_H-elongata_contig77055.15380.1|Name=mRNA_H-elongata_contig77055.15380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-elongata_contig77055:1749..2940+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77055:1749..2940+ >mRNA_H-elongata_contig77055.15380.1 ID=mRNA_H-elongata_contig77055.15380.1|Name=mRNA_H-elongata_contig77055.15380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig77055:1749..2940+ (Himanthalia elongata Himel1 dioecious)back to top |