mRNA_H-elongata_contig77024.15377.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77024.15377.1
Unique NamemRNA_H-elongata_contig77024.15377.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77024.15377.1 vs. uniprot
Match: A0A6H5JZ55_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ55_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.960e-56
Identity = 110/204 (53.92%), Postives = 141/204 (69.12%), Query Frame = 1 
Query:   40 VKLCRAQSLKRAQLLGKQDPYVRARLYYQGQQIGECRSSTCRDGGRNPTWQVASKSVFTFYVPATVTLDRLALTLDVVNENMIADNFIGTTGSIRLDQAADGRDRWWNISTGGSLQAIIELVSNDTHGAGAVGNN-----SRSGTAAA----------------GRANVGSPSPHAAVVSARPASVPAPG-AYGTASPVSYAQT 585
            V++C+AQ+LK+ Q++GKQDPYVRA+L + G +IGECRSST  DGGRNPTWQ  +KSVFTFYVPATVTLD LA+ LDVVN+N++AD+ IGTTGSI L  AA G  +WWNIS+GG++QAIIEL++ ++ G G  G +     SR+  AAA                GR    +P PH AV  A P +  APG AYG A+P + A +
Sbjct:  190 VRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLAVVLDVVNDNLVADSIIGTTGSIGLQTAATGESKWWNISSGGTIQAIIELITPESGGGGGTGTHPNTAYSRNSAAAADPAVASSRPSGGSYGGGRVATVNPPPHVAVAHATPVAAGAPGNAYGGAAPGAMAMS 393
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BLAST of mRNA_H-elongata_contig77024.15377.1 vs. uniprot
Match: D8LMN7_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN7_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.650e-54
Identity = 107/204 (52.45%), Postives = 141/204 (69.12%), Query Frame = 1 
Query:   40 VKLCRAQSLKRAQLLGKQDPYVRARLYYQGQQIGECRSSTCRDGGRNPTWQVASKSVFTFYVPATVTLDRLALTLDVVNENMIADNFIGTTGSIRLDQAADGRDRWWNISTGGSLQAIIELVSNDTHGAG--------------------AVGNNSRSGTAA-AGRANVGSPSPHAAVVSARPASVPAPG-AYGTASPVSYAQT 585
            V++C+AQ+LK+ Q++GKQDPYVRA+L + G +IGECRSST  DGGRNPTWQ  ++SVFTFYVPATVTL+ LA+ LDVVN+N++AD+ IGTTGSI L  AA G  +WWN+S+GG+LQAIIEL++ ++ G                      AV ++  SG +   GR    +PSPH AV  A P +  APG AYG A+PV+ A +
Sbjct:  172 VRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMARSVFTFYVPATVTLETLAVVLDVVNDNLVADSIIGTTGSIGLKTAATGESKWWNVSSGGTLQAIIELITPESGGXXXXXTHPNIAYSRSXXXXXXPAVASSRPSGGSYNGGRVATVNPSPHVAVAHATPVAAGAPGNAYGGATPVATAMS 375
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BLAST of mRNA_H-elongata_contig77024.15377.1 vs. uniprot
Match: D7G451_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G451_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.240e-24
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:   40 VKLCRAQSLKRAQLLGKQDPYVRARLYYQGQQIGECRSSTCRDGGRNPTWQVASKSVFTFYVPATVTLDRLALTLDVVNEN-MIADNFIGTTGSIRLDQAADGRDRWWNISTGGSLQAII 396
            V +  AQ+LK    +  QDPYV+A+L   G QI E +S T  +GGRNP+W     + FTFYVP+ V L +LA+ L++ + N M AD  IGT G I L   ADG+ RWW +++GG LQA +
Sbjct:  166 VNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSW-ARRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASV 284
[Close]
BLAST of mRNA_H-elongata_contig77024.15377.1 vs. uniprot
Match: A0A6H5L4D8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.040e-24
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:   40 VKLCRAQSLKRAQLLGKQDPYVRARLYYQGQQIGECRSSTCRDGGRNPTWQVASKSVFTFYVPATVTLDRLALTLDVVNEN-MIADNFIGTTGSIRLDQAADGRDRWWNISTGGSLQAII 396
            V +  AQ+LK    +  QDPYV+A+L   G Q+ E +S T  +GGRNP+W     + FTFYVP+ V L +LA+ L++ + N M AD  IGT G I L   ADG+ RWW +++GG LQA +
Sbjct:  143 VNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQVSEVKSGTHNNGGRNPSW-AGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASV 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77024.15377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZ55_9PHAE1.960e-5653.92C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LMN7_ECTSI2.650e-5452.45C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
D7G451_ECTSI2.240e-2446.67C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L4D8_9PHAE6.040e-2445.83C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77024contigH-elongata_contig77024:742..2482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size585
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77024.15377.1prot_H-elongata_contig77024.15377.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77024 742..2482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.054508-CDS-H-elongata_contig77024:741..8761622931175.054508-CDS-H-elongata_contig77024:741..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77024 742..876 +
1691679729.0210652-CDS-H-elongata_contig77024:741..8761691679729.0210652-CDS-H-elongata_contig77024:741..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77024 742..876 +
1622931175.0678623-CDS-H-elongata_contig77024:1243..14411622931175.0678623-CDS-H-elongata_contig77024:1243..1441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77024 1244..1441 +
1691679729.0301335-CDS-H-elongata_contig77024:1243..14411691679729.0301335-CDS-H-elongata_contig77024:1243..1441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77024 1244..1441 +
1622931175.0810359-CDS-H-elongata_contig77024:2230..24821622931175.0810359-CDS-H-elongata_contig77024:2230..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77024 2231..2482 +
1691679729.038076-CDS-H-elongata_contig77024:2230..24821691679729.038076-CDS-H-elongata_contig77024:2230..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77024 2231..2482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77024.15377.1

>prot_H-elongata_contig77024.15377.1 ID=prot_H-elongata_contig77024.15377.1|Name=mRNA_H-elongata_contig77024.15377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MTSRRWQPLAAKQVKLCRAQSLKRAQLLGKQDPYVRARLYYQGQQIGECR
SSTCRDGGRNPTWQVASKSVFTFYVPATVTLDRLALTLDVVNENMIADNF
IGTTGSIRLDQAADGRDRWWNISTGGSLQAIIELVSNDTHGAGAVGNNSR
SGTAAAGRANVGSPSPHAAVVSARPASVPAPGAYGTASPVSYAQT
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mRNA from alignment at H-elongata_contig77024:742..2482+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77024.15377.1 ID=mRNA_H-elongata_contig77024.15377.1|Name=mRNA_H-elongata_contig77024.15377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1741bp|location=Sequence derived from alignment at H-elongata_contig77024:742..2482+ (Himanthalia elongata Himel1 dioecious)
ATGACGTCACGTCGGTGGCAACCTTTGGCGGCGAAACAGGTCAAGCTGTG
TCGTGCGCAGAGTCTCAAGAGGGCCCAACTTCTCGGTAAGCAGGATCCCT
ACGTGCGAGCAAGGCTCTACTATCAGGGTCAACAGGTAGGAGAGGGGGGG
GGGGGGGGATACATGCATCTCACGAATCCATTGGGGGGGGGTAATTTATT
TTCAACCCCACGGGGGTCATAGCAGTTGGCATTCGCGAGCAGTGGTATCG
GTGTTTATGACCCGTGAGCGTACGCACGCTGCTTAGCCCAGCCCAGCTCA
GCCCAGCGCTCGTTTGTAGCTAGCACGACCCCGCCAAACACCCACGCCCA
GTCAATCGTTCCTGTTCTCAAGGTTCGCTGCTTGAGGTGCAGAGCACAGC
TGTCGGCATCAATTCGAACACGCCCACCTGGTTTTATTGTAAATTTACAT
GCATTTTTACCCCCCCCCCCCCTCCTCCTCCTCCGTTGCCACGGCGCTAC
AGATTGGGGAGTGCCGAAGCTCGACTTGCAGAGACGGAGGCCGGAACCCG
ACGTGGCAGGTGGCCAGCAAGAGCGTTTTCACGTTCTACGTGCCAGCGAC
GGTGACTCTCGACCGTCTGGCGCTCACGCTGGACGTGGTAAACGAGAACA
TGATCGCGGATAACTTCATCGGCACAACGGGGAGCATCCGCCTCGATCAG
GTGGGAGAGATTACTGTGTATTACTACTATTAAAAAGGGAAGAAGGCCTA
AATTGATGAATTACTTGGCGCCTCTTTTTTTTCTTCTTTTTTTCTTTTTT
TTTCTTGCGGGTGCGGAAAAATAAACAATCGGCATCTCCGAGTGGAGTGT
GTGGTCAACCAACAACCTATTTTTTGGTCGTTATTATTATTTGTAAAAGA
CTTTGGGCTCATTCCAACTCTCCGAACATCCACGCCTTCTTGGCATCGTA
AGAGGTGCAGTCCAGGGGACCAACTATTATTTATTTATCAACAATTTTTT
GTTACCGATAGTACCCGCAGTTTCACGAGCTAGCTTTTAGCTTTTACCTA
CGTTACCCCACAACGACCGCAGCACTCCTCTCCCCTTGCCCCACCCCCCA
AGGAATATATGGAAAACCCATTTATTTCTTATTTCTCTGTCAAGAGTCAC
GAAGACGTTTTTTGTTTTTTTTGTACGGTGCTTGATGAGAAGGCCACTCA
CTCGAGTTACGCCTATTTATCAAATACCGGTAACGGCATAACTAGATTCA
CTATTCATTTTTTACCCCGAGATCAATCAGGATCCACCCCAATCTGGTAA
AGCAGATAGATGTATAGAAGGGAGGAGTAGAGGGCATTTTTTGTTTTTTG
TTAGTCTTTCCCTGTTAGTTATTAATTATTGCCTATTTTCGTAATATTCT
AGTCGTAGCTACTCGTGTACCCTTATTTGTTTCCCTAAAAAAAAATAAGA
TCATACATAAATGTATACATGTTCCTGCTGCGTATCCAGGCCGCCGACGG
CCGCGACCGCTGGTGGAACATCTCAACCGGCGGTAGCCTCCAGGCGATTA
TCGAGCTCGTCAGCAACGACACCCACGGGGCCGGGGCCGTCGGAAACAAC
AGCAGGAGCGGTACCGCCGCTGCCGGTAGGGCTAACGTTGGGAGTCCTTC
CCCCCACGCTGCCGTCGTTTCCGCGAGACCTGCGTCGGTGCCAGCTCCGG
GGGCGTACGGGACCGCCTCCCCTGTCTCTTACGCTCAGACG
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Coding sequence (CDS) from alignment at H-elongata_contig77024:742..2482+

>mRNA_H-elongata_contig77024.15377.1 ID=mRNA_H-elongata_contig77024.15377.1|Name=mRNA_H-elongata_contig77024.15377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig77024:742..2482+ (Himanthalia elongata Himel1 dioecious)
ATGACGTCACGTCGGTGGCAACCTTTGGCGGCGAAACAGGTCAAGCTGTG
TCGTGCGCAGAGTCTCAAGAGGGCCCAACTTCTCGGTAAGCAGGATCCCT
ACGTGCGAGCAAGGCTCTACTATCAGGGTCAACAGATGACGTCACGTCGG
TGGCAACCTTTGGCGGCGAAACAGGTCAAGCTGTGTCGTGCGCAGAGTCT
CAAGAGGGCCCAACTTCTCGGTAAGCAGGATCCCTACGTGCGAGCAAGGC
TCTACTATCAGGGTCAACAGATTGGGGAGTGCCGAAGCTCGACTTGCAGA
GACGGAGGCCGGAACCCGACGTGGCAGGTGGCCAGCAAGAGCGTTTTCAC
GTTCTACGTGCCAGCGACGGTGACTCTCGACCGTCTGGCGCTCACGCTGG
ACGTGGTAAACGAGAACATGATCGCGGATAACTTCATCGGCACAACGGGG
AGCATCCGCCTCGATCAGATTGGGGAGTGCCGAAGCTCGACTTGCAGAGA
CGGAGGCCGGAACCCGACGTGGCAGGTGGCCAGCAAGAGCGTTTTCACGT
TCTACGTGCCAGCGACGGTGACTCTCGACCGTCTGGCGCTCACGCTGGAC
GTGGTAAACGAGAACATGATCGCGGATAACTTCATCGGCACAACGGGGAG
CATCCGCCTCGATCAGGCCGCCGACGGCCGCGACCGCTGGTGGAACATCT
CAACCGGCGGTAGCCTCCAGGCGATTATCGAGCTCGTCAGCAACGACACC
CACGGGGCCGGGGCCGTCGGAAACAACAGCAGGAGCGGTACCGCCGCTGC
CGGTAGGGCTAACGTTGGGAGTCCTTCCCCCCACGCTGCCGTCGTTTCCG
CGAGACCTGCGTCGGTGCCAGCTCCGGGGGCGTACGGGACCGCCTCCCCT
GTCTCTTACGCTCAGACGGCCGCCGACGGCCGCGACCGCTGGTGGAACAT
CTCAACCGGCGGTAGCCTCCAGGCGATTATCGAGCTCGTCAGCAACGACA
CCCACGGGGCCGGGGCCGTCGGAAACAACAGCAGGAGCGGTACCGCCGCT
GCCGGTAGGGCTAACGTTGGGAGTCCTTCCCCCCACGCTGCCGTCGTTTC
CGCGAGACCTGCGTCGGTGCCAGCTCCGGGGGCGTACGGGACCGCCTCCC
CTGTCTCTTACGCTCAGACG
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