prot_H-elongata_contig77.15372.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig77.15372.1
Unique Nameprot_H-elongata_contig77.15372.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length210
Homology
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.510e-20
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 0
Query:    1 MVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMR---------AFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 113
            M++D  G  P PSK++A+ ++ RP TVEE+R LLG+T YLRQFV NY    AP++ +L    F  K+  ++          AF++LR+ L S  +LA PD    F+L TDAS  G GA + Q
Sbjct:  503 MIIDSTGLYPAPSKLDAIARMPRPHTVEELRTLLGLTGYLRQFVPNYSLTAAPLTNILRKKAFASKRARKLPIPWSAAGEDAFQSLRDTLASPRVLAFPDLERPFELHTDASTLGVGASLMQ 624          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: UPI00094E5FEC (uncharacterized protein LOC109546305 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094E5FEC)

HSP 1 Score: 90.1 bits (222), Expect = 2.560e-17
Identity = 44/112 (39.29%), Postives = 72/112 (64.29%), Query Frame = 0
Query:    2 VVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 113
            +VD HG RP P K+ A++ ++ P  V E+R  +G   + R+FV N+ +++AP++ L++     R  E+  RAF ++++ L+S+ IL  PD+   F L+TDAS  G GAV+TQ
Sbjct:  827 LVDAHGLRPDPEKVQAIVNITPPRNVTEIRRFIGTASWYRRFVPNFSSVLAPLTNLIKKKVTWRWSEDCQRAFNSIKDSLISAPILTCPDFERKFVLQTDASHFGLGAVLTQ 938          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A5A7TQA2_CUCME (Putative mitochondrial protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TQA2_CUCME)

HSP 1 Score: 87.8 bits (216), Expect = 3.030e-17
Identity = 52/156 (33.33%), Postives = 88/156 (56.41%), Query Frame = 0
Query:    2 VVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQHRGSDCLRELAVIKNGLLEITNRLR--MHGSHVCRCQVPVLPLG 155
            V+ + G    P KI ++++   P  V+EVR  LG+T Y R+FV  YG++ AP++ LL++  F+   E +  AF  L+  +++  +LALPD+   F++ TDAS  G GAV+ Q       +      N  L + +R R  ++G +VC  ++ +L +G
Sbjct:  146 VISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWTIETE-EAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQ------AKHPIAYYNHTLALRDRARKGINGCYVCSTEMEILRVG 294          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A2G8L7X2_STIJA (Reverse transcriptase domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L7X2_STIJA)

HSP 1 Score: 89.0 bits (219), Expect = 5.140e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 0
Query:    2 VVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLE--DPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 113
            ++ +   +P P KI A+ Q  RP T  +VR  LG+  Y R+FV N+  +  P++   +  +P   R  E Q +AF+ L+  L SS IL LPD + +F LRTDAS+TG GA++ Q
Sbjct:  344 IIGEGRVKPKPDKIKAIQQAERPTTKTQVRSFLGLVGYYRKFVPNFAAVAVPLTNCTKKGEPNVIRWGESQEQAFQTLKSKLASSPILQLPDLHREFTLRTDASDTGVGAILLQ 457          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A2G8LII9_STIJA (Uncharacterized protein n=5 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LII9_STIJA)

HSP 1 Score: 89.0 bits (219), Expect = 6.770e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 0
Query:    2 VVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLE--DPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 113
            ++ +   +P P KI A+ Q  RP T  +VR  LG+  Y R+FV N+  +  P++   +  +P   R  E Q +AF+ L+  L SS IL LPD + +F LRTDAS+TG GA++ Q
Sbjct: 1319 IIGEGRVKPKPDKIKAIQQAERPTTKTQVRSFLGLVGYYRKFVPNFAAVAVPLTNCTKKGEPNVIRWGESQEQAFQTLKSKLASSPILQLPDLHREFTLRTDASDTGVGAILLQ 1432          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A5A7T217_CUCME (Putative retroelement pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7T217_CUCME)

HSP 1 Score: 88.2 bits (217), Expect = 1.210e-16
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 0
Query:    2 VVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQHR 115
            V+   G    P KI A+    +P+ V+E R  LG+T Y R+FV NYGT+VAP++ LL+   F   +E  + AF  L+  ++S  +LALPD+   F++ TDAS  G GAV+ Q R
Sbjct:  525 VISGEGVAVDPEKIRAISDWPQPMNVKETRGFLGLTGYYRRFVRNYGTIVAPLTQLLKKGGFIWTEEATL-AFDLLKSAMMSLPVLALPDFTKQFEIETDASGYGIGAVLVQDR 637          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: UPI000E6FF83F (uncharacterized protein LOC113294646 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FF83F)

HSP 1 Score: 82.0 bits (201), Expect = 3.600e-16
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 0
Query:    2 VVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQHR 115
            ++   G    PS++  + +   P T++E+R  LG+T Y R+FV NYG +  P++ LL+  +F+    E   AF  L+E + S+ +L LPD+   F + TDAS+ G GAV+ Q +
Sbjct:   40 IISGEGVAAEPSRVECMSKWPIPKTLKELRGFLGLTGYYRKFVQNYGLIAKPLTELLKKNKFQ-WSSEATNAFELLKEAMTSTPVLILPDFNKSFDIATDASDLGVGAVLMQEK 152          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: UPI001263D50A (uncharacterized protein LOC116125114 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263D50A)

HSP 1 Score: 86.3 bits (212), Expect = 5.450e-16
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 0
Query:    5 QHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQH 114
            Q+G    P KI+ ++    P TV+ +R LLG+T Y R+FV NYG +  P++ LL+   F+   E Q RAF  L++ ++S  +LA P++   F+++TDAS  G GAV+ QH
Sbjct:  802 QNGVEADPVKIDCMLSWPTPKTVKSLRGLLGLTGYYRKFVKNYGQIAQPLTQLLKKDSFKWNPEAQ-RAFECLQQAMVSVPVLATPNFTEPFEIQTDASGLGMGAVLVQH 910          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5GBP4_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GBP4_9HEMI)

HSP 1 Score: 86.3 bits (212), Expect = 5.500e-16
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 0
Query:    2 VVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 113
            +VD++G R  P K+ A++ + RP T +EVR   G   + R+FV ++ T +AP+  LL+  +     EE  RAF  +R+ L+ S +L+ PD+   F+L TDAS  G GAV+ Q
Sbjct:  430 IVDEYGLRVDPDKVTAILNIPRPRTPKEVRQFCGTCSWYRRFVRDFSTRIAPLHNLLKKGQKFNWSEEAERAFLDIRQALIQSPVLSCPDFQQPFELHTDASAYGLGAVLIQ 541          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A5A7UAE4_CUCME (Ty3/gypsy retrotransposon protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UAE4_CUCME)

HSP 1 Score: 86.3 bits (212), Expect = 5.860e-16
Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 0
Query:    3 VDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQHR 115
            + + G    P KI AV +   P  V EVR  LG+T Y R+FV NYGT+ AP++ LL+   ++  +EE+  AF  L+  +++  +L +PD+   F++ +DAS  G GAV+TQ R
Sbjct:  926 ISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLTQLLKKGAYKWGEEEEA-AFGKLKRAMMTLPVLTMPDFSLPFEIESDASGFGVGAVLTQCR 1037          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDH3_9PHAE5.510e-2042.62RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
UPI00094E5FEC2.560e-1739.29uncharacterized protein LOC109546305 n=1 Tax=Dendr... [more]
A0A5A7TQA2_CUCME3.030e-1733.33Putative mitochondrial protein n=2 Tax=Cucumis mel... [more]
A0A2G8L7X2_STIJA5.140e-1740.35Reverse transcriptase domain-containing protein n=... [more]
A0A2G8LII9_STIJA6.770e-1740.35Uncharacterized protein n=5 Tax=Stichopus japonicu... [more]
A0A5A7T217_CUCME1.210e-1642.11Putative retroelement pol polyprotein n=1 Tax=Cucu... [more]
UPI000E6FF83F3.600e-1635.96uncharacterized protein LOC113294646 n=1 Tax=Papav... [more]
UPI001263D50A5.450e-1640.91uncharacterized protein LOC116125114 n=1 Tax=Pista... [more]
A0A6H5GBP4_9HEMI5.500e-1639.29RNA-directed DNA polymerase (Fragment) n=1 Tax=Nes... [more]
A0A5A7UAE4_CUCME5.860e-1639.82Ty3/gypsy retrotransposon protein n=1 Tax=Cucumis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 13..100
e-value: 8.1E-15
score: 56.6
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 2..116
NoneNo IPR availablePANTHERPTHR24559:SF222coord: 2..116
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..210
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..58
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..130
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 68..120
e-value: 1.9E-10
score: 40.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77contigH-elongata_contig77:2494..3167 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77.15372.1mRNA_H-elongata_contig77.15372.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig77 2494..3725 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig77.15372.1 ID=prot_H-elongata_contig77.15372.1|Name=mRNA_H-elongata_contig77.15372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
MVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTL
VAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRT
DASETGAGAVVTQHRGSDCLRELAVIKNGLLEITNRLRMHGSHVCRCQVP
VLPLGVVVHIYHRLLGADLAVQEPAPLTEVPPLGTPPYGVRRDLEVATRH
AEPAGGCHVP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041577RT_RNaseH_2