mRNA_H-elongata_contig76994.15371.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: D8LB24_ECTSI (OTU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB24_ECTSI) HSP 1 Score: 249 bits (636), Expect = 2.980e-78 Identity = 150/252 (59.52%), Postives = 161/252 (63.89%), Query Frame = 1
Query: 1 QVMRQASVWGGGPEIVALTNALCRPIHVYELASNGVGFCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFPCQEAVRSSSDYGPG-GPGSVVSLRGSAAEVSAIG-GGKQPGFFRRLWSNLLTCSCLR-RRAVDVAEDP----------PTIADGSGISSDGVAEARGGERSXXXXXXXXXXXXXXXXXXGSEAMSGVRGGGGWEKGEG-----SRPSTQNAFWRNGRPVVGWTRVR 702
+VMRQ+SVWGGGPEIVAL+NALCRPIHVYELASNGV FCFRRMACFGSPSFD KQAIHILSADSRFPNLKPG+QLANGNHFLALFPC E V S G G G G SLRGSAAE SAIG GGK+PG FRR S+LLTCSCL RRAV ++P PT A G E GG GSE +SG RGGGG G S + NA + GR V GWTR R
Sbjct: 139 EVMRQSSVWGGGPEIVALSNALCRPIHVYELASNGVSFCFRRMACFGSPSFDDKQAIHILSADSRFPNLKPGRQLANGNHFLALFPCPETVASPDAAGVGVGGGGASSLRGSAAEASAIGVGGKKPGKFRRFLSSLLTCSCLSSRRAVREDDEPAAGDVTTITDPTSAHKGAAHPQGAMETGGGGVGGASGWQQGTPAPDVVVGLGSETVSGARGGGGTHARRGWPQQQSGLAAHNA--KKGRGV-GWTRTR 387
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A835YZQ7_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ7_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.810e-38 Identity = 79/121 (65.29%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 7 MRQASVWGGGPEIVALTNALCRPIHVYELASN-GVGFCFRRMACFGSPSFDGK-QAIHILSADSRFPNLKPGKQLANGNHFLALFPCQEAVRSSSDYGPGGPGSVVSLRGSAAEVSAIGGG 363
MR +VWGGGPEIVAL+N L RPIHVYELA+ G FCFRRMACFGSP FDG+ + IHILSAD+RFPNL PG+QLANGNHFL LFPC + S GP G VV R A S GGG
Sbjct: 143 MRLPAVWGGGPEIVALSNCLRRPIHVYELAAGAGRRFCFRRMACFGSPLFDGECEPIHILSADARFPNLAPGQQLANGNHFLCLFPCAPSDALSEACGPLRGGKVVPRR---ARRSGSGGG 260
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: B7G567_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G567_PHATC) HSP 1 Score: 130 bits (328), Expect = 8.780e-33 Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 7 MRQASVWGGGPEIVALTNALCRPIHVYELASNGV----------GFCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFPCQEAVR 276
M+Q SVWGGGPEIVAL N L RPIHVYELAS F RRMACFGSP FD +Q +HILSADSRFP++ PG+QLA+GNHFLALFP + VR
Sbjct: 187 MQQDSVWGGGPEIVALCNVLQRPIHVYELASTTTRSSRNDDERQSFVLRRMACFGSPKFDRRQPLHILSADSRFPDVTPGQQLASGNHFLALFPHERKVR 286
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A7S3L1U5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1U5_9STRA) HSP 1 Score: 127 bits (320), Expect = 3.680e-32 Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 1 QVMRQASVWGGGPEIVALTNALCRPIHVYELA--------SNGVGFCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFP 258
Q M Q VWGGGPEIVAL+N L RPIHVYELA S+G F RRMACFGSP FD ++A+HILSADSRFP+L PG+QL+ GNHFLA+FP
Sbjct: 147 QAMEQDCVWGGGPEIVALSNLLQRPIHVYELATSSSSSKPSSGNTFVLRRMACFGSPRFDRREALHILSADSRFPDLLPGEQLSAGNHFLAVFP 240
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A7S1V4T9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4T9_9STRA) HSP 1 Score: 124 bits (310), Expect = 4.410e-31 Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 QVMRQASVWGGGPEIVALTNALCRPIHVYELAS---NGVGFCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFP 258
+ MRQ S WGGGPEIVAL+N L RPIHVYEL + N F RRM CFGSP FD ++A+HILSADSRFP+++PGKQ GNHFLA+FP
Sbjct: 89 ETMRQDSTWGGGPEIVALSNMLRRPIHVYELYAPNRNVQDFRLRRMCCFGSPKFDRQEALHILSADSRFPDVQPGKQKKEGNHFLAIFP 177
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A7S2PCL7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCL7_9STRA) HSP 1 Score: 122 bits (306), Expect = 7.700e-31 Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 1 QVMRQASVWGGGPEIVALTNALCRPIHVYELA--------SNGVGFCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFPCQEAVRSSS 285
+ M Q WGGGPEIVAL NAL RPIHVYEL+ SN F RMACFGSP FD ++ +HILSADSRFP++ PG+Q +GNHFLALFP + A +S+
Sbjct: 49 EAMLQDCTWGGGPEIVALVNALRRPIHVYELSVHEELPNGSNSKEFHLSRMACFGSPKFDKREPLHILSADSRFPDITPGRQKKSGNHFLALFPVRSATFTST 151
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A1Z5JTL4_FISSO (OTU domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTL4_FISSO) HSP 1 Score: 122 bits (307), Expect = 6.980e-30 Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query: 7 MRQASVWGGGPEIVALTNALCRPIHVYELASNGVG------------FCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFP 258
M + VWGGGPEIVAL+N L RPIHVYELA G F +RMACFGSP FDGK+A+HILSADSRFP+++PG+Q+ GNHFL++FP
Sbjct: 180 MEEDCVWGGGPEIVALSNILQRPIHVYELAMESPGAEDATDQPKKPTFILKRMACFGSPRFDGKRALHILSADSRFPDIQPGEQMVAGNHFLSVFP 275
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A7S2EWL6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EWL6_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.020e-29 Identity = 70/150 (46.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query: 4 VMRQASVWGGGPEIVALTNALCRPIHVYELAS-------------NGVGFCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFPC-QEAVRSSSDYGPGGP--------GSVVSLR-------GSAAEVSAIGGGK 366
+M++ S WGGGPEIVAL N L RPIHVYEL + +G F RRMACFGSP FD ++ +HILSADSRFP++ PG+Q+ +GNHF A+FP + R S+ GG S S R GSA S+IGG K
Sbjct: 9 LMKRESYWGGGPEIVALCNVLKRPIHVYELTAVTDAEADDGSKSRSGSQFRLRRMACFGSPKFDRREPLHILSADSRFPDVTPGRQMTSGNHFFAMFPLTSKTARQSAGVRGGGDMMTSEAALKSTFSQRXXXXXKSGSAKTESSIGGKK 158
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A7S2PB71_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB71_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.530e-29 Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 1 QVMRQASVWGGGPEIVALTNALCRPIHVYELA--------SNGVGFCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFPCQEAVRSSS 285
+ M Q WGGGPEIVAL NAL RPIHVYEL+ SN F RMACFGSP FD ++ +HILSADSRFP++ PG+Q +GNHFLALFP + A +S+
Sbjct: 235 EAMLQDCTWGGGPEIVALVNALRRPIHVYELSVHEELPNGSNSKEFHLSRMACFGSPKFDKREPLHILSADSRFPDITPGRQKKSGNHFLALFPVRSATFTST 337
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Match: A0A1E7F5U0_9STRA (OTU domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5U0_9STRA) HSP 1 Score: 116 bits (290), Expect = 4.550e-29 Identity = 70/165 (42.42%), Postives = 86/165 (52.12%), Query Frame = 1
Query: 7 MRQASVWGGGPEIVALTNALCRPIHVYEL-----------------------ASNGVG-------FCFRRMACFGSPSFDGKQAIHILSADSRFPNLKPGKQLANGNHFLALFPCQEAVRSSSDYGPGGPGSVVSLRGSAAEVSAIGGGKQP---GFFRRLWSNL 402
MRQ S WGGGPEIVAL N L RPIHVYEL A+ V F RRMACFGSP FD A+HILSADSRFP++ PG+QL +GNHFLA+FP SD + + E++ + G G++RR W++L
Sbjct: 1 MRQESYWGGGPEIVALCNVLQRPIHVYELCVPEDKKKENXXXXXXXXXXXXAATIDVSRPTPTSPFVLRRMACFGSPKFDRSPALHILSADSRFPDITPGEQLESGNHFLAIFPSPTTNHPQSDEEE----NKQRIPRGGTEITKVDEGNNKYISGWWRRFWTSL 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76994.15371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76994.15371.1 >prot_H-elongata_contig76994.15371.1 ID=prot_H-elongata_contig76994.15371.1|Name=mRNA_H-elongata_contig76994.15371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp MRQASVWGGGPEIVALTNALCRPIHVYELASNGVGFCFRRMACFGSPSFDback to top mRNA from alignment at H-elongata_contig76994:250..1763+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76994.15371.1 ID=mRNA_H-elongata_contig76994.15371.1|Name=mRNA_H-elongata_contig76994.15371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1514bp|location=Sequence derived from alignment at H-elongata_contig76994:250..1763+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76994:250..1763+ >mRNA_H-elongata_contig76994.15371.1 ID=mRNA_H-elongata_contig76994.15371.1|Name=mRNA_H-elongata_contig76994.15371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig76994:250..1763+ (Himanthalia elongata Himel1 dioecious)back to top |