mRNA_H-elongata_contig76986.15370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76986.15370.1
Unique NamemRNA_H-elongata_contig76986.15370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76986.15370.1 vs. uniprot
Match: D7FV12_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV12_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.010e-13
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 RYVSSSNKKQVLDLMARMFSFTEEDKEMVGLSRRALPSIPGMLTAMF 141
            RYVSS +KKQVL+LMARMF+FTEE+KE VGLS R  P++PGMLTAMF
Sbjct:  284 RYVSSHHKKQVLELMARMFNFTEEEKEQVGLSNRG-PTLPGMLTAMF 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76986.15370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV12_ECTSI5.010e-1376.60GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76986contigH-elongata_contig76986:184..1925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionChromosome segregation ATPases
Ec32 orthologEc-13_002120.1
Exons2
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.3451672-CDS-H-elongata_contig76986:183..2671622931174.3451672-CDS-H-elongata_contig76986:183..267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76986 184..267 +
1691679728.6924489-CDS-H-elongata_contig76986:183..2671691679728.6924489-CDS-H-elongata_contig76986:183..267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76986 184..267 +
1622931174.3607514-CDS-H-elongata_contig76986:1868..19251622931174.3607514-CDS-H-elongata_contig76986:1868..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76986 1869..1925 +
1691679728.707246-CDS-H-elongata_contig76986:1868..19251691679728.707246-CDS-H-elongata_contig76986:1868..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76986 1869..1925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76986.15370.1prot_H-elongata_contig76986.15370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76986 184..1925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76986.15370.1

>prot_H-elongata_contig76986.15370.1 ID=prot_H-elongata_contig76986.15370.1|Name=mRNA_H-elongata_contig76986.15370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
RYVSSSNKKQVLDLMARMFSFTEEDKEMVGLSRRALPSIPGMLTAMF
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mRNA from alignment at H-elongata_contig76986:184..1925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76986.15370.1 ID=mRNA_H-elongata_contig76986.15370.1|Name=mRNA_H-elongata_contig76986.15370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1742bp|location=Sequence derived from alignment at H-elongata_contig76986:184..1925+ (Himanthalia elongata Himel1 dioecious)
AGGTACGTGTCTTCCTCCAACAAGAAGCAGGTGCTAGATCTCATGGCGAG
AATGTTCAGCTTTACCGAGGAGGACAAGGAGATGGTAGGTGGCTGTAGGA
GGGGGGAGGGGGAGTCACTGAAGTGTCTCCGTTTTGGGGACAAGAGGGTC
AAATTTCGCTGCCTGCCGGGGAACCAATCGTCGTATCCCCAGTCGTAGCC
CTTTTCTGGAATACATTATTAGTCGAGGAGATGGGAGGTGCACGTTTTGT
TCCCGGTAGGGGACGAAATGAATAGCCCCCCTCCCCGAATTTTGGTCTTT
TGGGCCATTCCAACCCCTATCGGTGGAATGGTCGTTGCCCGTCAACAGCA
GCCTTGACTCTAGAAAAGGACGCGTGTCTATAGCTGGGTGTACAAAACAA
GTCAAATAGAATGCACATATTTATGTACAAAATGTAAACCTCCAGGTCTG
CTATGGACCCCTACTATTCATAAATCACGTAGCTCTCTTCAATATATAAG
TCTATGTTTTTATCTCTAGCTATGCGATTGACCTCGAGCGCTCGCCGATG
TAACCACTACGTATACTTTTTTTATGGCTCTACGAGAGACGTTGAGCTAT
ACGATGGTCTACAAATCCGGATTGTGGTTCTCGGAGTATAGCTTAAAATA
GTACTAATAGGGGGGGGAGGAAAATTAAACGAAATGCATTCGCATGCACA
TACACTTACAACCCTGGCGCCTTGTGTACGATTTTTGCCACGCTTTGTTG
AGGGTAACACTTTCCCCTTCCTCCCCGCTAAGACTCGGAGGCGTTGCCCT
TCTCCCCCCCCCCCCCCAAGTCTCCGACGAAGAACTGAAACAAATGTTGC
CTTTTGTACTTTGTGGGTTTGCGAAGTACTTGTGAGATTGCTAACGTCGA
GGAACGAAGGAATTTGGATGCCATATCAAAGAGAGCCGATTCTAGTGTAG
TCGGCGCATGATGTATACCAGGGTACCAAGTAGTATTCTAATAGGGTATT
AGAATATTAGAATACTTGTACCGATAGAACATGCACGCCCCGATCATCGC
TGAAGCAAACCAGTGATTCCCCCGCCCCCGCCTCCCCATCTTATCGAGAG
CTGCAAGAAATGATCAGTCGTCATCACCGAGATAGGGGGGGGGTGGGGGG
GATTAAAATATCAAGATGTGTGCACAGAGCACGTGTTTAGTGTGGTATTA
TTAGTATATCTACGGTAGAAATATTATTAGCAGCCTTCGCCGAGGCCTAA
TCTCTCTCGAGAGGTATCGACTCTAGAGAACATCGTTGTATCATGATGAC
GTCATCGTTGCATCAGTTTCATGATCGTACTATATACCGTATTATACCAT
ACTATACCGTATTATACTGTACTATACCGTATTATTTTTATTTAAAAGAC
TTTAGGCTCATTCTATACCGTACTATACCGTACCGTATGTAATATTAAAT
ATTAGTACGTTTTGTGGCTTGCACAGCGCTGCCCTATTATTATTATTAGT
AGTAGTAGCAGTATAAATAGTACGGTAGATTTTATTGAAGTGTCTTACTA
TTATAGTATGTCTTATATTATGTCTCCCGCCGTTTCCTGAACGCGATCCG
AATTAAAATGTCTTGATTAACATTGCTATTATTTTTACTGCTACTAATAT
GAATACTGTCACTATTTCTAATAATATATGAACAGGTGGGGCTTTCGAGG
CGTGCACTACCTTCTATCCCGGGAATGCTGACCGCTATGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig76986:184..1925+

>mRNA_H-elongata_contig76986.15370.1 ID=mRNA_H-elongata_contig76986.15370.1|Name=mRNA_H-elongata_contig76986.15370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig76986:184..1925+ (Himanthalia elongata Himel1 dioecious)
AGGTACGTGTCTTCCTCCAACAAGAAGCAGGTGCTAGATCTCATGGCGAG
AATGTTCAGCTTTACCGAGGAGGACAAGGAGATGAGGTACGTGTCTTCCT
CCAACAAGAAGCAGGTGCTAGATCTCATGGCGAGAATGTTCAGCTTTACC
GAGGAGGACAAGGAGATGGTGGGGCTTTCGAGGCGTGCACTACCTTCTAT
CCCGGGAATGCTGACCGCTATGTTTGTGGGGCTTTCGAGGCGTGCACTAC
CTTCTATCCCGGGAATGCTGACCGCTATGTTT
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