mRNA_H-elongata_contig76978.15368.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76978.15368.1
Unique NamemRNA_H-elongata_contig76978.15368.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: D8LGL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGL9_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 3.740e-42
Identity = 74/105 (70.48%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGWCSSVDLDPVRLKKPRTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPKPELVRES 315
            QIGS  GPKNFSS+QTVFHRDDVP  +RER KEVKEWKERRIL  G+  GW SSV LDP R+K  RTKSNSE DP +PYQYNYRAE LPPK P+P PK  + + S
Sbjct:   40 QIGSVKGPKNFSSDQTVFHRDDVPATKRERKKEVKEWKERRILRMGRPPGWSSSVTLDPTRMKFARTKSNSELDPGKPYQYNYRAEVLPPKSPDPVPKSNMFQVS 144
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: A0A1V9ZQ24_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ24_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.860e-11
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGWCSSVDLDPVRLKKP---RTKSNSEQDPTRPYQYNYRAERLPPKFP 279
            QIGSA  P N+  N++ FH DD+PV +    ++V+   E +IL+  K +   S+ D   ++LK P   RT  N E +    YQYNYRAE+LP K+P
Sbjct:   17 QIGSAQAPINYKFNESCFHVDDIPVQKLAAKRQVQASLESKILSIDKTAWNTSTSD---IKLKTPSYKRTFINGEMNHGNMYQYNYRAEKLPSKYP 109
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: A0A067CHX2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHX2_SAPPC)

HSP 1 Score: 57.0 bits (136), Expect = 2.200e-7
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGWCSSVDLDPVRLKKP---RTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPKP 297
            QIGSA  P N+   ++ FH DD+P  +    +E+++    +ILA  K +   S+ D     LK P   RT  ++E +    YQYN+RAE+LP K+P    KP
Sbjct:   17 QIGSAQAPINYKFQESCFHVDDIPPQKLAAKREIQKALASQILAIDKHAWDASTAD---TMLKTPSHKRTFVHAEMNHGNMYQYNFRAEKLPDKYPTLLSKP 115
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: A0A1V9YGF5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGF5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.120e-7
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGWCSSVDLDPVRLKKP---RTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPKPELVRES 315
            QIGSA  P N+   ++ FH DD+P  +    +EV+   E +IL+  K + W +S       LK P   R+  N E +    YQYN+RAE+LP K+P    KP    + 
Sbjct:   17 QIGSAQAPINYKFQESCFHVDDIPAHKLAAKREVQASLESKILSHDKHA-WDNSTAE--TMLKTPCYKRSLVNGEMNHGNMYQYNFRAEKLPDKYPTLLHKPNKFNDG 121
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: A0A485LGS3_9STRA (Aste57867_21104 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGS3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.690e-6
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGWCSSVDLDPVRLKK-PRTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPKPELVRES 315
            QIG    P N+   ++ FH DD P A+    +EV+   + +IL+        S+ +   +R     RT +N E +    YQYNYRAE+LP K+P    KP    + 
Sbjct:   17 QIGGTQAPVNYKFQESCFHIDDTPPAKIAAKREVQASLKSKILSVETPDWNQSTTESSKLRTNSCKRTFANGEMNHGNMYQYNYRAEKLPVKYPTLLAKPNKFNQG 122
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: A0A5D6Y8P4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8P4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.570e-6
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGW-CSSVDLDPVRLKKP---RTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPK 294
            QIG  + P N+++++ VF   D P A+    +EV E  + RIL++ +  GW  S+ + D +++      RT  N+E++    Y YN+RAE+LP K+P   PK
Sbjct:  397 QIGGMDAPMNYAASERVFGASDTPPAKALAKQEVLESLKSRILSS-EPPGWNASTSNYDNMQMTGKCYKRTNVNAERNRMHMYVYNFRAEKLPEKYPTLKPK 497
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: A0A024UF96_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UF96_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.480e-5
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGWCSSVDLDPVRLK-KPRTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPKPELVRES 315
            QIG    P N+   ++ FH DD P  +     EV+     +IL+T + S   ++ +   +R     RT +N E +    YQYNYRAE+LP K+P    KP    + 
Sbjct:   17 QIGGTQAPVNYKFQESCFHIDDTPPQKIAAKHEVQASLRSKILSTERPSWDQATTESCILRTNCYKRTFANGEMNHGNMYQYNYRAEKLPDKYPTLLAKPTKFNQG 122
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: K3X4A9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4A9_GLOUD)

HSP 1 Score: 51.6 bits (122), Expect = 2.530e-5
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGW-CSSVDLDPVRLKKP---RTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPK 294
            +IG  + P N+S  + VF   D P  +    +EV E  + RIL++ K  GW  S+ + D +++      RT  N+E++    Y YN+RAE+LP K+P   PK
Sbjct:   26 KIGGKDAPVNYSFEERVFSSKDTPSGKALAKQEVLESLKSRILSSKK-PGWNMSTSNYDNMQMNGKCYKRTNVNAERNRANMYVYNFRAEKLPKKYPTVKPK 126
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BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Match: A0A6G0XV90_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV90_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.870e-5
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 1 
Query:    1 QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISGWCSSVDLDPVRLKK-PRTKSNSEQDPTRPYQYNYRAERLPPKFP 279
            Q+GS   P N+   +  FH D+ P  +    +EV+   + +IL+  K     S+ + + +R     RT  N E +    YQYNYRAE LP K+P
Sbjct:   17 QVGSTQAPINYKFQELCFHTDETPAHKLAAKREVQASLKSKILSVEKADWNQSTKETEVLRTNSYKRTFVNGEMNHGNMYQYNYRAEVLPIKYP 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76978.15368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LGL9_ECTSI3.740e-4270.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9ZQ24_9STRA1.860e-1141.67Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A067CHX2_SAPPC2.200e-737.25Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YGF5_9STRA4.120e-736.11Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485LGS3_9STRA1.690e-633.02Aste57867_21104 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6Y8P4_9STRA9.570e-635.29Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A024UF96_9STRA1.480e-533.02Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
K3X4A9_GLOUD2.530e-535.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0XV90_9STRA2.870e-534.04Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76978contigH-elongata_contig76978:437..2719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.5e-34
Seed eggNOG ortholog2880.D8LGL9
EggNOG OGs2B5M4@1,2S0JA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002700.1
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.1637466-CDS-H-elongata_contig76978:436..6671622931174.1637466-CDS-H-elongata_contig76978:436..667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76978 437..667 -
1691679728.5924711-CDS-H-elongata_contig76978:436..6671691679728.5924711-CDS-H-elongata_contig76978:436..667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76978 437..667 -
1622931174.1820056-CDS-H-elongata_contig76978:2611..27191622931174.1820056-CDS-H-elongata_contig76978:2611..2719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76978 2612..2719 -
1691679728.607705-CDS-H-elongata_contig76978:2611..27191691679728.607705-CDS-H-elongata_contig76978:2611..2719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76978 2612..2719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76978.15368.1prot_H-elongata_contig76978.15368.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76978 437..2719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76978.15368.1

>prot_H-elongata_contig76978.15368.1 ID=prot_H-elongata_contig76978.15368.1|Name=mRNA_H-elongata_contig76978.15368.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
QIGSANGPKNFSSNQTVFHRDDVPVARRERIKEVKEWKERRILATGKISG
WCSSVDLDPVRLKKPRTKSNSEQDPTRPYQYNYRAERLPPKFPEPAPKPE
LVRESRPPCLVH*
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mRNA from alignment at H-elongata_contig76978:437..2719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76978.15368.1 ID=mRNA_H-elongata_contig76978.15368.1|Name=mRNA_H-elongata_contig76978.15368.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2283bp|location=Sequence derived from alignment at H-elongata_contig76978:437..2719- (Himanthalia elongata Himel1 dioecious)
CAGATCGGGAGCGCGAACGGCCCGAAGAACTTCTCCAGCAACCAAACAGT
GTTTCACAGAGACGACGTGCCAGTCGCCCGCCGTGAGCGGATCAAGGAAG
TGAAAGAGGTAATAATGTTATATATAATATGATGTATGGTAGGTAATAGA
CTGTGGATGGTGACATATTGTGATACATATATGCTAATAATATAGGGTGG
TAATATTATAGATAGTATGGTAGGTGTATAGCAATATTATTTGACAATAT
ATTGCAATATGCATAATATATATATATCATATTATATGGTAATACATGGT
AACAAAATATGGTGGTGGTAATAAATATGGTAATAAATATTACCTGGTAT
TATAGGATTATATTACTTGTAACATGTATGGGCTACGCGACAGTTCGTCC
CATTATTTTTCTCCGGGCAGAGCGTTGTAGTTAATATTGAGGGAGTGGCG
TTCCGGCCAAGAGCCGTGTTAGTCTGAAGAGGATAATATATAGTAGCTGG
ATGTACTACGCGTATTTCCAGACAAAAATAGGTTCACGGAAAGTAACCCC
CAGGTGGGTTACATGCACTATAATAGCATAGAATGGTGAGTAGATTAAAG
GGCCGGATTGCGCGGTTATCTGCAATATAATAAATACACACACACACAAA
CACAGTGCACAGTATAACAAGGGACCGAATTGGGAAGACGTAGTAATGTA
CACATTCGAACCCGACGATAGTTGGTCCCCTGGATGGTACCTCTCACGGC
GCTAAGGAGGTNNNNNNNNNNGGAGGGTTGGAATGAGTTCAAGGTTTTTT
TATAAAAATATTCACACACAAACACACGCGCGCACACACAACATGCAGCG
GCATAAAATGAGTAGATCACAGGGGGGGGCAAATTGCGCGGTTGGTTATT
ATGTGCAGTTTAATAAATACACTCACATTTAATCAATACATACAGTCCAC
ACGCACATATATACATATATACATATATATATATATATGCGTGACAGGAT
CGAATTGTTGCGCGGTTATTATGTGCCCTTTATTTAATAAATAAATACGC
ACATCATTTAATATTTACACTCTGGTACATAATACACAGAAATAAATTAT
CAATGCGTGGTGTTGTGTGTGTAGCCTATAATGGTTATATAGATAGCATG
ACAGAGTCGAATTGCGCGAATGTATATTTATATACATATATATATATGTG
TGGAATTTAATAAACACATACATACTACAACATAAACTGGGTTGCGAAGA
GACCACACCCCCACCTCCTTTCGCGTTTCAAAACGAAATCGTCTGAGCGG
GAAGGAGAGGGGAATGGACCTTACCCGTACACACCCAGAGCAAACCGCAC
CAAGCCAAGCTACTGCTGAGCTTTTCAAGTGGAAGCCAACCAACAATGTT
ATCAATAATCGTGCGTAAGGTCGTCCTCGTCGTCGTGTCTGCCTTCAGAG
ATATCATATCGCGGGACAGGGTCATCATCAGAACGCACGCTGTTGACTTT
TCGCGGGGTGGGGGGGGGGCGCTTCTGGATTCATCCGTCACTCCAGCCTA
TTAGAGAACGACGTGGTGCATAGTGCATATTTTTAAGCAACCACGATGAC
TGCGCACCGAAGAAGACGTCCATCTGCCGCAACCTCCCCAAAGCCACGAC
GGCGCAACCCCATCCATCACCATTTGTCCATCAGAAACAGGGAGGGGGAG
GGGGGGTGTTTCACTAAGATGATGTCGCGCACGGAAACGATAAAAATATG
TTGTTATTAAATTATAGCAGCGTGAACACAGAGCACTATATATAGTACTA
AATTCGATTCGTTCCATCGGGGGTACTCGTGAACCTACGATATCTAAAAA
TTATGGAAGAAGGGACGGGCGGTGGGCGGTGCTCCGCCCTCCTCCTCCCG
AAGAGTTTGGCTTCGTTTGTATCTCCCATCCCCCCTCCCCTGCAACGTCC
TCCCGAGACTCATTCCTGTCAATGATCTAGCAGCTTACTGGTGCAAAAAA
ATGATTACACCCCCGCCTTCCTCCCCCCCTTTACTCCCTCCCACGTGTAC
AGTGGAAGGAGAGACGAATTCTCGCTACGGGGAAAATTTCAGGATGGTGC
TCGAGCGTGGATCTTGACCCTGTGCGCCTCAAGAAACCCAGGACAAAGAG
CAATTCTGAGCAGGACCCGACCAGGCCTTACCAATACAACTACCGTGCGG
AAAGACTGCCACCCAAGTTTCCCGAACCAGCGCCTAAGCCAGAGTTGGTG
AGAGAGTCACGTCCACCTTGCTTGGTTCATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig76978:437..2719-

>mRNA_H-elongata_contig76978.15368.1 ID=mRNA_H-elongata_contig76978.15368.1|Name=mRNA_H-elongata_contig76978.15368.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig76978:437..2719- (Himanthalia elongata Himel1 dioecious)
CAGATCGGGAGCGCGAACGGCCCGAAGAACTTCTCCAGCAACCAAACAGT
GTTTCACAGAGACGACGTGCCAGTCGCCCGCCGTGAGCGGATCAAGGAAG
TGAAAGAGCAGATCGGGAGCGCGAACGGCCCGAAGAACTTCTCCAGCAAC
CAAACAGTGTTTCACAGAGACGACGTGCCAGTCGCCCGCCGTGAGCGGAT
CAAGGAAGTGAAAGAGTGGAAGGAGAGACGAATTCTCGCTACGGGGAAAA
TTTCAGGATGGTGCTCGAGCGTGGATCTTGACCCTGTGCGCCTCAAGAAA
CCCAGGACAAAGAGCAATTCTGAGCAGGACCCGACCAGGCCTTACCAATA
CAACTACCGTGCGGAAAGACTGCCACCCAAGTTTCCCGAACCAGCGCCTA
AGCCAGAGTTGGTGAGAGAGTCACGTCCACCTTGCTTGGTTCATTGATGG
AAGGAGAGACGAATTCTCGCTACGGGGAAAATTTCAGGATGGTGCTCGAG
CGTGGATCTTGACCCTGTGCGCCTCAAGAAACCCAGGACAAAGAGCAATT
CTGAGCAGGACCCGACCAGGCCTTACCAATACAACTACCGTGCGGAAAGA
CTGCCACCCAAGTTTCCCGAACCAGCGCCTAAGCCAGAGTTGGTGAGAGA
GTCACGTCCACCTTGCTTGGTTCATTGA
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