mRNA_H-elongata_contig76971.15367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76971.15367.1
Unique NamemRNA_H-elongata_contig76971.15367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76971.15367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76971contigH-elongata_contig76971:772..1488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size525
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76971.15367.1prot_H-elongata_contig76971.15367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76971 772..1464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.01375-CDS-H-elongata_contig76971:771..10021622931174.01375-CDS-H-elongata_contig76971:771..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76971 772..1002 -
1691679728.5508313-CDS-H-elongata_contig76971:771..10021691679728.5508313-CDS-H-elongata_contig76971:771..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76971 772..1002 -
1622931174.0675566-CDS-H-elongata_contig76971:1194..14641622931174.0675566-CDS-H-elongata_contig76971:1194..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76971 1195..1464 -
1691679728.5688405-CDS-H-elongata_contig76971:1194..14641691679728.5688405-CDS-H-elongata_contig76971:1194..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76971 1195..1464 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.0868425-UTR-H-elongata_contig76971:1464..14881622931174.0868425-UTR-H-elongata_contig76971:1464..1488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76971 1465..1488 -
1691679728.5804486-UTR-H-elongata_contig76971:1464..14881691679728.5804486-UTR-H-elongata_contig76971:1464..1488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76971 1465..1488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76971.15367.1

>prot_H-elongata_contig76971.15367.1 ID=prot_H-elongata_contig76971.15367.1|Name=mRNA_H-elongata_contig76971.15367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MLMATLNNEGAEIDRLVADGASVVKQKKFWRGKSLLHLASERGCPEAVSA
LLRHGADANSRDKQTRTPLHLAAERGHLAVVRILLAAGADDVEVNPRDDD
AATPVHFAAQQGSLEVLEVLLERGADPNAADGNQDSPLHLAVLYLEDPNR
LFGVVEALLRWDADEGA
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mRNA from alignment at H-elongata_contig76971:772..1488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76971.15367.1 ID=mRNA_H-elongata_contig76971.15367.1|Name=mRNA_H-elongata_contig76971.15367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig76971:772..1488- (Himanthalia elongata Himel1 dioecious)
GCCGACAACAACGGTGGCTGGAGCATGCTTATGGCGACGCTGAACAACGA
GGGTGCAGAGATCGACCGGCTCGTGGCAGACGGCGCCAGCGTGGTCAAGC
AGAAGAAGTTCTGGCGAGGCAAGTCCCTCCTGCACCTGGCCTCGGAGAGG
GGCTGCCCGGAGGCCGTGTCTGCGCTCCTTCGTCACGGCGCGGACGCGAA
CTCCAGGGACAAGCAGACCCGCACCCCGTTGCACCTGGCCGCGGAGAGGG
GTCACCTGGCCGTGGTCCGAATCCTGCTGGCCGCAGGCGCCGACGTTTAC
CCTCGGTACGGTGACCGTGACTGCTCAGCCATGGACGAGGCGGTGTGCAA
GGGGCACGTGGAGGTGGTGGAGGCGATTGTACTCGCCGGGGCGGACCCGG
ACGCGGCCGACTGTACCAACTACCGGGCCCTTCACCGCGCGGCCTACGAG
AACCAGGCTGAATCGGCGAGGGTGCTCCTCGATAAGGACGTCGAAGTTAA
CCCTCGCGACGACGACGCCGCGACCCCGGTGCACTTCGCGGCCCAGCAGG
GGTCCCTGGAGGTCTTGGAAGTCCTCTTGGAGCGTGGTGCCGACCCCAAC
GCGGCGGACGGGAACCAGGACTCCCCCCTCCACCTGGCGGTCCTGTACCT
CGAGGACCCCAATCGCCTGTTCGGGGTGGTGGAGGCGTTACTTCGGTGGG
ACGCAGACGAGGGGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig76971:772..1488-

>mRNA_H-elongata_contig76971.15367.1 ID=mRNA_H-elongata_contig76971.15367.1|Name=mRNA_H-elongata_contig76971.15367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig76971:772..1488- (Himanthalia elongata Himel1 dioecious)
ATGCTTATGGCGACGCTGAACAACGAGGGTGCAGAGATCGACCGGCTCGT
GGCAGACGGCGCCAGCGTGGTCAAGCAGAAGAAGTTCTGGCGAGGCAAGT
CCCTCCTGCACCTGGCCTCGGAGAGGGGCTGCCCGGAGGCCGTGTCTGCG
CTCCTTCGTCACGGCGCGGACGCGAACTCCAGGGACAAGCAGACCCGCAC
CCCGTTGCACCTGGCCGCGGAGAGGGGTCACCTGGCCGTGGTCCGAATCC
TGCTGGCCGCAGGCGCCGACATGCTTATGGCGACGCTGAACAACGAGGGT
GCAGAGATCGACCGGCTCGTGGCAGACGGCGCCAGCGTGGTCAAGCAGAA
GAAGTTCTGGCGAGGCAAGTCCCTCCTGCACCTGGCCTCGGAGAGGGGCT
GCCCGGAGGCCGTGTCTGCGCTCCTTCGTCACGGCGCGGACGCGAACTCC
AGGGACAAGCAGACCCGCACCCCGTTGCACCTGGCCGCGGAGAGGGGTCA
CCTGGCCGTGGTCCGAATCCTGCTGGCCGCAGGCGCCGACGACGTCGAAG
TTAACCCTCGCGACGACGACGCCGCGACCCCGGTGCACTTCGCGGCCCAG
CAGGGGTCCCTGGAGGTCTTGGAAGTCCTCTTGGAGCGTGGTGCCGACCC
CAACGCGGCGGACGGGAACCAGGACTCCCCCCTCCACCTGGCGGTCCTGT
ACCTCGAGGACCCCAATCGCCTGTTCGGGGTGGTGGAGGCGTTACTTCGG
TGGGACGCAGACGAGGGGGCCGACGTCGAAGTTAACCCTCGCGACGACGA
CGCCGCGACCCCGGTGCACTTCGCGGCCCAGCAGGGGTCCCTGGAGGTCT
TGGAAGTCCTCTTGGAGCGTGGTGCCGACCCCAACGCGGCGGACGGGAAC
CAGGACTCCCCCCTCCACCTGGCGGTCCTGTACCTCGAGGACCCCAATCG
CCTGTTCGGGGTGGTGGAGGCGTTACTTCGGTGGGACGCAGACGAGGGGG
CC
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