prot_H-elongata_contig7696.15366.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7696.15366.1
Unique Nameprot_H-elongata_contig7696.15366.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
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BLAST of mRNA_H-elongata_contig7696.15366.1 vs. uniprot
Match: D8LDT4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.460e-23
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 0 
Query:    1 MDCYQLQKCVSVRWWSDVTMVRSMVRMKKAINLQVMKNEAPVPNIIKNIMKRLDWDTMRALLDVLQPFAHATELMEADNHPTIGLVLGMVCWLRKKINGLM 101
            +  Y LQ+CV  RWW DVTM+ S++  ++A+ L +MKNEA VP+  K    +LDW  M A+L V  PFA AT  MEAD HPTIGLVLG+V   RK+I+GL+
Sbjct:  570 VQSYPLQRCVRARWWLDVTMLESLLFNRRAMELALMKNEALVPDAAK----KLDWGFMEAVLAV--PFAEATRTMEADKHPTIGLVLGLVALRRKQIDGLL 664
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BLAST of mRNA_H-elongata_contig7696.15366.1 vs. uniprot
Match: A0A803TQX6_ANOCA (BED-type domain-containing protein n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803TQX6_ANOCA)

HSP 1 Score: 52.0 bits (123), Expect = 2.370e-5
Identity = 31/97 (31.96%), Postives = 54/97 (55.67%), Query Frame = 0 
Query:    4 YQLQKCVSVRWWSDVTMVRSMVRMKKAINLQVMKNEAPVPNIIKNIMKRLDWDTMRALLDVLQPFAHATELMEADNHPTIGLVLGMVCWLRKKINGL 100
            ++L + +S RW S   M+  MV  +KA++   +   APV  ++     + +WDT+  L+DVL PF HATE + +++   +   + MV  LR+ +  L
Sbjct:  480 HKLLQDISNRWNSTYKMLERMVEQQKAVHGISLTLVAPVSKLVPT---KQEWDTISQLVDVLNPFKHATETL-SESKALLSQAVPMVLGLRRHLGRL 572
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7696.15366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDT4_ECTSI1.460e-2353.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A803TQX6_ANOCA2.370e-531.96BED-type domain-containing protein n=1 Tax=Anolis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 6..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7696contigH-elongata_contig7696:9869..10207 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7696.15366.1mRNA_H-elongata_contig7696.15366.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7696 9848..10207 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7696.15366.1 ID=prot_H-elongata_contig7696.15366.1|Name=mRNA_H-elongata_contig7696.15366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MDCYQLQKCVSVRWWSDVTMVRSMVRMKKAINLQVMKNEAPVPNIIKNIM
KRLDWDTMRALLDVLQPFAHATELMEADNHPTIGLVLGMVCWLRKKINGL
MYSLALGTEVSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf