mRNA_H-elongata_contig7696.15366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7696.15366.1
Unique NamemRNA_H-elongata_contig7696.15366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7696.15366.1 vs. uniprot
Match: D8LDT4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.190e-27
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:    4 CADWLKMDCYQLQKCVSVRWWSDVTMVRSMVRMKKAINLQVMKNEAPVPNIIKNIMKRLDWDTMRALLDVLQPFAHATELMEADNHPTIGLVLGMVCWLRKKINGLM 324
            CADWL +  Y LQ+CV  RWW DVTM+ S++  ++A+ L +MKNEA VP+  K    +LDW  M A+L V  PFA AT  MEAD HPTIGLVLG+V   RK+I+GL+
Sbjct:  564 CADWLPVQSYPLQRCVRARWWLDVTMLESLLFNRRAMELALMKNEALVPDAAK----KLDWGFMEAVLAV--PFAEATRTMEADKHPTIGLVLGLVALRRKQIDGLL 664
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BLAST of mRNA_H-elongata_contig7696.15366.1 vs. uniprot
Match: A0A803TQX6_ANOCA (BED-type domain-containing protein n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803TQX6_ANOCA)

HSP 1 Score: 51.6 bits (122), Expect = 4.040e-5
Identity = 31/97 (31.96%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   31 YQLQKCVSVRWWSDVTMVRSMVRMKKAINLQVMKNEAPVPNIIKNIMKRLDWDTMRALLDVLQPFAHATELMEADNHPTIGLVLGMVCWLRKKINGL 321
            ++L + +S RW S   M+  MV  +KA++   +   APV  ++     + +WDT+  L+DVL PF HATE + +++   +   + MV  LR+ +  L
Sbjct:  480 HKLLQDISNRWNSTYKMLERMVEQQKAVHGISLTLVAPVSKLVPT---KQEWDTISQLVDVLNPFKHATETL-SESKALLSQAVPMVLGLRRHLGRL 572
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7696.15366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDT4_ECTSI3.190e-2755.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A803TQX6_ANOCA4.040e-531.96BED-type domain-containing protein n=1 Tax=Anolis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7696contigH-elongata_contig7696:9848..10207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.9028995-UTR-H-elongata_contig7696:9847..98681622931173.9028995-UTR-H-elongata_contig7696:9847..9868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7696 9848..9868 +
1691679728.5322893-UTR-H-elongata_contig7696:9847..98681691679728.5322893-UTR-H-elongata_contig7696:9847..9868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7696 9848..9868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.9229553-CDS-H-elongata_contig7696:9868..102071622931173.9229553-CDS-H-elongata_contig7696:9868..10207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7696 9869..10207 +
1691679728.541501-CDS-H-elongata_contig7696:9868..102071691679728.541501-CDS-H-elongata_contig7696:9868..10207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7696 9869..10207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7696.15366.1prot_H-elongata_contig7696.15366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7696 9869..10207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7696.15366.1

>prot_H-elongata_contig7696.15366.1 ID=prot_H-elongata_contig7696.15366.1|Name=mRNA_H-elongata_contig7696.15366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MDCYQLQKCVSVRWWSDVTMVRSMVRMKKAINLQVMKNEAPVPNIIKNIM
KRLDWDTMRALLDVLQPFAHATELMEADNHPTIGLVLGMVCWLRKKINGL
MYSLALGTEVSL*
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mRNA from alignment at H-elongata_contig7696:9848..10207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7696.15366.1 ID=mRNA_H-elongata_contig7696.15366.1|Name=mRNA_H-elongata_contig7696.15366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig7696:9848..10207+ (Himanthalia elongata Himel1 dioecious)
GAGTGCGCCGATTGGCTTAAGATGGATTGCTACCAGCTCCAGAAGTGCGT
GAGCGTGAGGTGGTGGTCAGACGTCACCATGGTCCGTAGCATGGTGCGGA
TGAAGAAGGCTATTAACCTGCAGGTCATGAAGAACGAAGCACCTGTTCCG
AATATCATCAAGAATATCATGAAGAGGCTCGACTGGGATACAATGAGGGC
ACTCCTCGACGTCCTGCAGCCATTTGCCCACGCGACTGAGCTTATGGAGG
CCGACAATCACCCCACCATCGGCCTCGTCCTGGGTATGGTCTGCTGGCTG
CGCAAGAAGATCAACGGCCTCATGTATTCGTTGGCCCTCGGCACCGAAGT
TAGTTTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig7696:9848..10207+

>mRNA_H-elongata_contig7696.15366.1 ID=mRNA_H-elongata_contig7696.15366.1|Name=mRNA_H-elongata_contig7696.15366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig7696:9848..10207+ (Himanthalia elongata Himel1 dioecious)
ATGGATTGCTACCAGCTCCAGAAGTGCGTGAGCGTGAGGTGGTGGTCAGA
CGTCACCATGGTCCGTAGCATGGTGCGGATGAAGAAGGCTATTAACCTGC
AGGTCATGAAGAACGAAGCACCTGTTCCGAATATCATCAAGAATATCATG
AAGAGGCTCGACTGGGATACAATGAGGGCACTCCTCGACGTCCTGCAGCC
ATTTGCCCACGCGACTGAGCTTATGGAGGCCGACAATCACCCCACCATCG
GCCTCGTCCTGGGTATGGTCTGCTGGCTGCGCAAGAAGATCAACGGCCTC
ATGTATTCGTTGGCCCTCGGCACCGAAGTTAGTTTATAGATGGATTGCTA
CCAGCTCCAGAAGTGCGTGAGCGTGAGGTGGTGGTCAGACGTCACCATGG
TCCGTAGCATGGTGCGGATGAAGAAGGCTATTAACCTGCAGGTCATGAAG
AACGAAGCACCTGTTCCGAATATCATCAAGAATATCATGAAGAGGCTCGA
CTGGGATACAATGAGGGCACTCCTCGACGTCCTGCAGCCATTTGCCCACG
CGACTGAGCTTATGGAGGCCGACAATCACCCCACCATCGGCCTCGTCCTG
GGTATGGTCTGCTGGCTGCGCAAGAAGATCAACGGCCTCATGTATTCGTT
GGCCCTCGGCACCGAAGTTAGTTTATAG
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