mRNA_H-elongata_contig76922.15364.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76922.15364.1
Unique NamemRNA_H-elongata_contig76922.15364.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.340e-13
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:   28 VLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQN-GGNKHA---FLTRLD 366
            V+ +    GCDVIG+QETRR G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAPT  V+ N GG+ HA   F T LD
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTNAGGDVHAKESFWTALD 123
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.540e-13
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRTSITRT----SRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLD 366
            + V+ +    GCDVIG+QETRR G  +    GY +  SG   G T  K+G  GVG+AI+ +I  +     R+ E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD
Sbjct:   32 MTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAG-TKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALD 154
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.140e-13
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRTSITRT----SRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLD 366
            + V+ +    GCDVIG+QETRR G  +    GY +  SG   G T  K+G+ GVG+AI+ ++  T     R  E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD
Sbjct:  178 MKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAG-TKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALD 300
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.480e-13
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLD 366
            + V+ +    GCDVIG+QETRR G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD
Sbjct:    1 MTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 123
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5KAA3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.740e-13
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAP--TVKQNGGN----KHAFLTRLD 366
            + V+ +    GCDVIG+QETRR+G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAP  TV+   G     K +F T LD
Sbjct:    1 MTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPSETVRTTAGGDVNAKDSFWTALD 123
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.810e-13
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLD 366
            + V+ +    GCDVIG+QETRR+G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD
Sbjct:  109 MTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 231
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.550e-13
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLD 366
            + V+ +    GCDVIG+QETRR G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD
Sbjct:    1 MTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 123
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5L2M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.240e-12
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:   52 GCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLDI 369
            GCDVIG+QETRR+G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD+
Sbjct:  140 GCDVIGLQETRRAGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDV 253
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-12
Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLD 366
            + ++ +    GCDVIG+QETRR G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD
Sbjct:   82 MTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 204
[Close]
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.320e-12
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:   22 LDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGGKTCGKKGQGGVGLAIRT----SITRTSRSPEFISNRLLNITLELRGRAKAVTFFVAYAPT--VKQNGGN----KHAFLTRLD 366
            + V+ +    GCDVIG+QETRR G  +    GY +  SG   G T  K+G  GVG+AI+     S+    R+ E IS RL+ + L++ GR   VTF V YAPT  V+   G     K +F T LD
Sbjct:  680 MTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAG-TKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALD 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76922.15364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK0_9PHAE1.340e-1343.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE6_9PHAE3.540e-1340.80Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JVN7_9PHAE5.140e-1340.80Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBZ6_9PHAE6.480e-1340.80Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KAA3_9PHAE6.740e-1340.80Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JMB4_9PHAE6.810e-1340.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE9.550e-1340.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2M5_9PHAE1.240e-1243.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.300e-1240.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE1.320e-1240.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76922contigH-elongata_contig76922:1193..1561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.710566-CDS-H-elongata_contig76922:1192..15611622931173.710566-CDS-H-elongata_contig76922:1192..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76922 1193..1561 +
1691679728.4629183-CDS-H-elongata_contig76922:1192..15611691679728.4629183-CDS-H-elongata_contig76922:1192..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76922 1193..1561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76922.15364.1prot_H-elongata_contig76922.15364.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76922 1193..1561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76922.15364.1

>prot_H-elongata_contig76922.15364.1 ID=prot_H-elongata_contig76922.15364.1|Name=mRNA_H-elongata_contig76922.15364.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MGRVGRALDVLNVYDRLGCDVIGVQETRRSGYSAFTQAGYSVYCSGECGG
KTCGKKGQGGVGLAIRTSITRTSRSPEFISNRLLNITLELRGRAKAVTFF
VAYAPTVKQNGGNKHAFLTRLDI
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mRNA from alignment at H-elongata_contig76922:1193..1561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76922.15364.1 ID=mRNA_H-elongata_contig76922.15364.1|Name=mRNA_H-elongata_contig76922.15364.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig76922:1193..1561+ (Himanthalia elongata Himel1 dioecious)
ATGGGACGCGTTGGACGGGCCCTAGATGTTTTAAATGTGTACGACCGACT
GGGGTGCGACGTTATCGGTGTGCAGGAGACCCGCCGCAGTGGATATTCAG
CCTTCACTCAGGCTGGCTACTCGGTGTACTGCAGCGGTGAGTGCGGTGGC
AAAACTTGTGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAAC
CTCCATCACACGTACTTCACGCTCACCGGAGTTTATCAGTAATCGCTTGC
TAAACATTACACTTGAACTACGGGGTCGAGCCAAGGCCGTTACGTTTTTT
GTGGCGTATGCCCCCACTGTAAAACAGAATGGTGGTAATAAACATGCATT
TCTGACGAGGTTGGATATA
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Coding sequence (CDS) from alignment at H-elongata_contig76922:1193..1561+

>mRNA_H-elongata_contig76922.15364.1 ID=mRNA_H-elongata_contig76922.15364.1|Name=mRNA_H-elongata_contig76922.15364.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig76922:1193..1561+ (Himanthalia elongata Himel1 dioecious)
ATGGGACGCGTTGGACGGGCCCTAGATGTTTTAAATGTGTACGACCGACT
GGGGTGCGACGTTATCGGTGTGCAGGAGACCCGCCGCAGTGGATATTCAG
CCTTCACTCAGGCTGGCTACTCGGTGTACTGCAGCGGTGAGTGCGGTGGC
AAAACTTGTGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAAC
CTCCATCACACGTACTTCACGCTCACCGGAGTTTATCAGTAATCGCTTGC
TAAACATTACACTTGAACTACGGGGTCGAGCCAAGGCCGTTACGTTTTTT
GTGGCGTATGCCCCCACTGTAAAACAGAATGGTGGTAATAAACATGCATT
TCTGACGAGGTTGGATATAATGGGACGCGTTGGACGGGCCCTAGATGTTT
TAAATGTGTACGACCGACTGGGGTGCGACGTTATCGGTGTGCAGGAGACC
CGCCGCAGTGGATATTCAGCCTTCACTCAGGCTGGCTACTCGGTGTACTG
CAGCGGTGAGTGCGGTGGCAAAACTTGTGGGAAGAAAGGGCAAGGTGGAG
TAGGGCTAGCTATTAGAACCTCCATCACACGTACTTCACGCTCACCGGAG
TTTATCAGTAATCGCTTGCTAAACATTACACTTGAACTACGGGGTCGAGC
CAAGGCCGTTACGTTTTTTGTGGCGTATGCCCCCACTGTAAAACAGAATG
GTGGTAATAAACATGCATTTCTGACGAGGTTGGATATA
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