mRNA_H-elongata_contig76898.15360.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76898.15360.1
Unique NamemRNA_H-elongata_contig76898.15360.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: D7G8S6_ECTSI (GTP:AMP phosphotransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8S6_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.190e-42
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPK 267
            M+ G FVPD+I+ E+L AAVER+K R KHILLDGFPRS AQA  LK+HLPVD+VMNLDVPR++I+DRL+DRWIHPGSGRVYAY+YRPPK
Sbjct:   89 MDQGKFVPDEIIFEVLMAAVERAKGRGKHILLDGFPRSTAQAKALKDHLPVDMVMNLDVPRQIIIDRLTDRWIHPGSGRVYAYAYRPPK 177
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: A0A835YWM7_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.930e-28
Identity = 51/91 (56.04%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREK--HILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPK 267
            ME G  VPD +M++L++  + R ++  K  ++LLDGFPR+ AQA+ L   + VD+V++LDVPR  IV+RL+DRW+HPGSGRVYAYSYRPP+
Sbjct:   86 MERGTLVPDTLMVDLVSEVLARLRTSAKAPNLLLDGFPRTLAQALVLDEKIAVDMVLSLDVPRATIVERLTDRWVHPGSGRVYAYSYRPPQ 176
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: A0A7S2RAH4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAH4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.180e-27
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV 270
            M+ GN VPD +M+ L+ + +E  K+    +LLDGFPR++ QA  L  HL VD+ +NL+VP E IV R+S+RWIHPGSGR+YAY Y PPKV
Sbjct:    9 MDSGNLVPDDLMVRLVLSELE--KTPVDRLLLDGFPRTRPQAEALGKHLHVDMALNLNVPTETIVARISNRWIHPGSGRIYAYDYNPPKV 96
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: A0A7S2H043_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H043_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.210e-26
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPK 267
            M  G+ VPD +++ L+   VERS S  K++LLDGFPR+  QA  L  HL VD+V+NL+VP + IV+R+S+RWIHP SGRVYAY Y PPK
Sbjct:   61 MARGHLVPDDLIVRLVLLEVERSNS--KNLLLDGFPRTVPQATELSQHLSVDMVLNLNVPVDTIVERISNRWIHPASGRVYAYDYNPPK 147
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: A0A7S2RAU8_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAU8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.650e-26
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV 270
            M+ GN VPD +M+ L+ + +E  K+    +LLDGFPR++ QA  L  HL VD+ +NL+VP E IV R+S+RWIHPGSGR+YAY Y PPKV
Sbjct:   97 MDSGNLVPDDLMVRLVLSELE--KTPVDRLLLDGFPRTRPQAEALGKHLHVDMALNLNVPTETIVARISNRWIHPGSGRIYAYDYNPPKV 184
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: K0T839_THAOC (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T839_THAOC)

HSP 1 Score: 106 bits (264), Expect = 3.390e-26
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV 270
            M++G  VPDK+M++L+      +  R +++LLDGFPR+ AQA  L + L VD+ +NL VP E IV+R+SDRWIHP SGRVY+YSY+PPKV
Sbjct:  102 MDVGGLVPDKLMVKLVMNDAVDAIKRGQNLLLDGFPRTAAQARALDDKLGVDLCINLCVPDETIVERISDRWIHPASGRVYSYSYKPPKV 191
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: B8C545_THAPS (ADK_lid domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C545_THAPS)

HSP 1 Score: 102 bits (253), Expect = 1.500e-25
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLEL-LAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV 270
            M+ G  VPD IM+ + L  AVE  K  +  +LLDGFPR+  QA+ L  +L VD+V+NL VP E I++R+SDRWIHP SGRVY+YSY+PP V
Sbjct:    1 MDQGALVPDNIMIRMVLDDAVEAIKEGQS-LLLDGFPRTMEQAVALDKNLDVDMVINLCVPNETIIERISDRWIHPASGRVYSYSYKPPMV 90
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: A0A7S4R5K6_9DINO (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R5K6_9DINO)

HSP 1 Score: 103 bits (257), Expect = 2.030e-25
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV 270
            ME G  VPD++M++++ A  E     ++H+LLDGFPR+ AQA +L  H+ VDV +NL VP E IV R S RW+HP SGR YAY Y PPKV
Sbjct:   71 MEAGGLVPDELMVDMVIA--ELKDIEKEHVLLDGFPRTSAQAESLGRHMRVDVALNLAVPAEEIVKRTSGRWLHPASGRTYAYDYNPPKV 158
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: A0A6S8N2W6_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8N2W6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.940e-25
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV 270
            M+ G  VPD +M++LL           K +LLDGFPR+  QA  L+N   +D V+NLD+P E IV+R++DRWIHP SGR+Y+YSY+PPKV
Sbjct:   92 MQAGALVPDDLMIKLLIDDATPHLEEGKSLLLDGFPRNLEQAKALENVAHIDYVVNLDIPTETIVERIADRWIHPASGRIYSYSYKPPKV 181
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BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Match: A0A448Z646_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z646_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.340e-25
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLPVDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV 270
            M+ G  VPDK+M+ L+         + + +LLDGFPR+  QA  L++ + VD+V+NLDVP E IV+RLSDRWIH  SGR+Y+YSY+PPKV
Sbjct:  116 MKEGKLVPDKLMINLVVEESAPYLEKGESLLLDGFPRTVGQAEALESSIHVDMVVNLDVPNETIVERLSDRWIHEPSGRIYSYSYKPPKV 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76898.15360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8S6_ECTSI1.190e-4276.40GTP:AMP phosphotransferase, mitochondrial n=2 Tax=... [more]
A0A835YWM7_9STRA3.930e-2856.04GTP:AMP phosphotransferase, mitochondrial n=1 Tax=... [more]
A0A7S2RAH4_9STRA3.180e-2755.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2H043_9STRA1.210e-2657.30GTP:AMP phosphotransferase, mitochondrial n=1 Tax=... [more]
A0A7S2RAU8_9STRA2.650e-2655.56GTP:AMP phosphotransferase, mitochondrial n=1 Tax=... [more]
K0T839_THAOC3.390e-2655.56GTP:AMP phosphotransferase, mitochondrial n=1 Tax=... [more]
B8C545_THAPS1.500e-2556.04ADK_lid domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S4R5K6_9DINO2.030e-2554.44GTP:AMP phosphotransferase, mitochondrial n=1 Tax=... [more]
A0A6S8N2W6_9STRA3.940e-2552.22GTP:AMP phosphotransferase, mitochondrial n=1 Tax=... [more]
A0A448Z646_9STRA6.340e-2553.33GTP:AMP phosphotransferase, mitochondrial n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76898contigH-elongata_contig76898:1399..2313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue6e-34
Seed eggNOG ortholog2880.D7G8S6
Preferred nameAK3
KEGG rclassRC00002
KEGG koko:K00939,ko:K00944
KEGG ReactionR00127,R00157,R00333,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
GOsGO:0001889,GO:0003674,GO:0003824,GO:0004017,GO:0004550,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006172,GO:0006213,GO:0006220,GO:0006725,GO:0006753,GO:0006754,GO:0006756,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007517,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009147,GO:0009150,GO:0009151,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009199,GO:0009200,GO:0009201,GO:0009205,GO:0009206,GO:0009208,GO:0009215,GO:0009218,GO:0009259,GO:0009260,GO:0009262,GO:0009394,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009611,GO:0009941,GO:0009987,GO:0009991,GO:0015949,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0021537,GO:0021549,GO:0021772,GO:0021988,GO:0022037,GO:0022607,GO:0030900,GO:0030902,GO:0031667,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0034357,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042278,GO:0042493,GO:0042592,GO:0042594,GO:0042651,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046031,GO:0046033,GO:0046034,GO:0046039,GO:0046041,GO:0046051,GO:0046060,GO:0046128,GO:0046131,GO:0046390,GO:0046483,GO:0046899,GO:0046939,GO:0046940,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0048871,GO:0050145,GO:0050817,GO:0050878,GO:0050896,GO:0051259,GO:0051260,GO:0055035,GO:0055086,GO:0060322,GO:0061008,GO:0061061,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0072527,GO:0090407,GO:0097009,GO:1901068,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
EC2.7.4.10,2.7.4.3
COG Functional cat.F
BiGG ReactioniRC1080.CRv4_Au5_s12_g2970_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-22_002830.1
Exons2
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.365067-CDS-H-elongata_contig76898:1398..15581622931173.365067-CDS-H-elongata_contig76898:1398..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76898 1399..1558 -
1691679728.2953649-CDS-H-elongata_contig76898:1398..15581691679728.2953649-CDS-H-elongata_contig76898:1398..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76898 1399..1558 -
1622931173.3809721-CDS-H-elongata_contig76898:2203..23131622931173.3809721-CDS-H-elongata_contig76898:2203..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76898 2204..2313 -
1691679728.3081753-CDS-H-elongata_contig76898:2203..23131691679728.3081753-CDS-H-elongata_contig76898:2203..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76898 2204..2313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76898.15360.1prot_H-elongata_contig76898.15360.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76898 1399..2313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76898.15360.1

>prot_H-elongata_contig76898.15360.1 ID=prot_H-elongata_contig76898.15360.1|Name=mRNA_H-elongata_contig76898.15360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MELGNFVPDKIMLELLAAAVERSKSREKHILLDGFPRSKAQAITLKNHLP
VDVVMNLDVPREVIVDRLSDRWIHPGSGRVYAYSYRPPKV
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mRNA from alignment at H-elongata_contig76898:1399..2313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76898.15360.1 ID=mRNA_H-elongata_contig76898.15360.1|Name=mRNA_H-elongata_contig76898.15360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig76898:1399..2313- (Himanthalia elongata Himel1 dioecious)
ATGGAGCTGGGGAATTTTGTCCCCGACAAGATCATGTTGGAGCTGTTGGC
CGCCGCGGTCGAACGGTCGAAGAGCCGAGAGAAGCATATATTGCTTGACG
GATTCCCGAGGTGAAGGAGCGGGGGGGAGTTTCTCTCTTGGCCGCGCGGT
TGCAGGGGGGGGGGGGGGGGGGGGAGAGGGGACTTTGTGTTTGCCTTGGC
CTTGGCCGTCCAGCTATTAATACTAATATTACTATAACGCTATTATACTA
TAGTGTAGATACCGTGGATAGATGCGATATCGTAACGCCGATCGCTCCGT
TTTCTCTACATGTGCGTATGTATCTTTATTACAACATGTACCTTTTGTGA
CAAGATATTGTGCCTTTTGTGGCAAGATGTATCGTTTATTACAATGTGTA
CCTTTTACGATGATATGTATCTTTTTAGGACAATATGTACCGTATGTTTT
AGGATAATATGTACCAGTTGGTCCCCTAGATTGCACTTACGGTGACAAGA
AGGTGTGGATGTTCGGAGAGTTAGAATGAGCCTAAAGTCTTTAAAATAAA
AATATGTACCAGTATATTGTATAATAATATGTACCTTTGTACCTTTTACG
AGAAGATGGCGTTGCGATGTAGTGCCCTCCCGAGCGTGATCGCGGCTATT
AATAGTATCGCTCTTTCTATCTCTCCCTGCCCATTTAAAAAGAATATATG
TCTTTATCTATGTATTAGTATGTGATATTCTCAACACTCAACTTGGACGC
AACAGGTCGAAGGCCCAGGCGATTACCCTGAAGAATCATCTTCCCGTGGA
CGTGGTGATGAACCTTGACGTGCCGCGCGAAGTGATCGTGGATAGACTGT
CCGATCGATGGATACACCCCGGATCGGGAAGAGTCTACGCGTACTCGTAT
CGTCCACCAAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig76898:1399..2313-

>mRNA_H-elongata_contig76898.15360.1 ID=mRNA_H-elongata_contig76898.15360.1|Name=mRNA_H-elongata_contig76898.15360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig76898:1399..2313- (Himanthalia elongata Himel1 dioecious)
ATGGAGCTGGGGAATTTTGTCCCCGACAAGATCATGTTGGAGCTGTTGGC
CGCCGCGGTCGAACGGTCGAAGAGCCGAGAGAAGCATATATTGCTTGACG
GATTCCCGAGATGGAGCTGGGGAATTTTGTCCCCGACAAGATCATGTTGG
AGCTGTTGGCCGCCGCGGTCGAACGGTCGAAGAGCCGAGAGAAGCATATA
TTGCTTGACGGATTCCCGAGGTCGAAGGCCCAGGCGATTACCCTGAAGAA
TCATCTTCCCGTGGACGTGGTGATGAACCTTGACGTGCCGCGCGAAGTGA
TCGTGGATAGACTGTCCGATCGATGGATACACCCCGGATCGGGAAGAGTC
TACGCGTACTCGTATCGTCCACCAAAGGTAGTCGAAGGCCCAGGCGATTA
CCCTGAAGAATCATCTTCCCGTGGACGTGGTGATGAACCTTGACGTGCCG
CGCGAAGTGATCGTGGATAGACTGTCCGATCGATGGATACACCCCGGATC
GGGAAGAGTCTACGCGTACTCGTATCGTCCACCAAAGGTA
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