mRNA_H-elongata_contig76872.15357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76872.15357.1
Unique NamemRNA_H-elongata_contig76872.15357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76872.15357.1 vs. uniprot
Match: A0A6H5KMM5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM5_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 5.010e-35
Identity = 87/191 (45.55%), Postives = 114/191 (59.69%), Query Frame = 1 
Query:  124 RSIIMPSEAKPFVDSEIGSDGAPAPAIGTRSAASKAAAKRHTGDRDGDKQVQGISKGNAFGLSDNNNINGGKTAAEEFPLSSVTATSCLPRSLATQRGWKMGAGESSRALVRAYHAAPEGSQKARRIAARLFCFTGFCLLPVTPDDARVLCSAAGDSLDWGLEEGEVPRLVSQTFRRQTREQKRELVIRIK 696
            RSI+MP EA+P +DS++G D A A                                  + G +   N     + A+E PLSS+   SCL R LA QRGW +G  ++ + L RA++ A  GSQ+ARR+AARLFC TG+ L  V P+DARVLC AAGDS++WGLE G+ PRLVSQ  RR+++EQKR LV+RIK
Sbjct:  326 RSIVMPCEAQPLMDSDLGEDHAEAETPNMPPXXXXXXXXXXXXXXXXXXXXXXXXXXPSQGSTSTTN-----SPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEAAGDSMEWGLE-GDEPRLVSQPVRRESKEQKRGLVLRIK 510
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BLAST of mRNA_H-elongata_contig76872.15357.1 vs. uniprot
Match: D8LM31_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM31_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.620e-33
Identity = 70/117 (59.83%), Postives = 89/117 (76.07%), Query Frame = 1 
Query:  346 AEEFPLSSVTATSCLPRSLATQRGWKMGAGESSRALVRAYHAAPEGSQKARRIAARLFCFTGFCLLPVTPDDARVLCSAAGDSLDWGLEEGEVPRLVSQTFRRQTREQKRELVIRIK 696
            A+E PLSS+   SCL R LA QRGW +G  ++ + L RA++ A  GSQ+ARR+AARLFC TG+ L  V P+DARVLC  AGDS++WGLE G+ PRLVSQ  RR+++EQKR LV+RIK
Sbjct:  397 ADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGDSMEWGLE-GDEPRLVSQPVRRESKEQKRGLVLRIK 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76872.15357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMM5_9PHAE5.010e-3545.55RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LM31_ECTSI2.620e-3359.83RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76872contigH-elongata_contig76872:1844..2539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-14_002690.1
Exons1
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.098613-CDS-H-elongata_contig76872:1843..25391622931173.098613-CDS-H-elongata_contig76872:1843..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76872 1844..2539 +
1691679728.1932795-CDS-H-elongata_contig76872:1843..25391691679728.1932795-CDS-H-elongata_contig76872:1843..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76872 1844..2539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76872.15357.1prot_H-elongata_contig76872.15357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76872 1844..2539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76872.15357.1

>prot_H-elongata_contig76872.15357.1 ID=prot_H-elongata_contig76872.15357.1|Name=mRNA_H-elongata_contig76872.15357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
GATSAAKKNVITISKSREPGENVPPQPPSQSFTKKSRSSRRRSIIMPSEA
KPFVDSEIGSDGAPAPAIGTRSAASKAAAKRHTGDRDGDKQVQGISKGNA
FGLSDNNNINGGKTAAEEFPLSSVTATSCLPRSLATQRGWKMGAGESSRA
LVRAYHAAPEGSQKARRIAARLFCFTGFCLLPVTPDDARVLCSAAGDSLD
WGLEEGEVPRLVSQTFRRQTREQKRELVIRIK
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mRNA from alignment at H-elongata_contig76872:1844..2539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76872.15357.1 ID=mRNA_H-elongata_contig76872.15357.1|Name=mRNA_H-elongata_contig76872.15357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=696bp|location=Sequence derived from alignment at H-elongata_contig76872:1844..2539+ (Himanthalia elongata Himel1 dioecious)
GGAGCCACAAGCGCCGCGAAGAAAAATGTCATCACGATTTCTAAGTCTCG
TGAACCGGGCGAAAATGTGCCTCCTCAGCCGCCGTCCCAGTCATTCACGA
AGAAGTCCCGAAGCTCTCGGCGCCGGTCTATCATCATGCCTTCCGAAGCG
AAGCCGTTCGTCGACAGCGAGATCGGCAGCGATGGAGCGCCAGCTCCAGC
AATTGGCACTAGGAGTGCTGCCTCGAAGGCAGCAGCCAAGAGACACACAG
GAGACCGCGATGGAGACAAGCAAGTCCAAGGAATTTCTAAAGGCAACGCC
TTCGGGCTCTCCGACAACAACAATATCAACGGTGGCAAGACGGCGGCGGA
GGAGTTTCCGCTATCCTCGGTTACCGCTACGTCATGCCTGCCACGCTCGC
TGGCGACCCAACGAGGCTGGAAAATGGGCGCGGGAGAATCCTCAAGGGCG
CTGGTACGGGCGTACCATGCAGCCCCTGAGGGTTCTCAAAAAGCGAGGCG
CATCGCTGCACGCCTTTTCTGCTTCACAGGGTTTTGTCTCTTGCCTGTCA
CCCCGGACGACGCTCGCGTGTTGTGCAGTGCTGCGGGAGACAGCTTGGAT
TGGGGTTTAGAAGAGGGAGAGGTACCACGATTGGTGAGCCAGACCTTCCG
CCGCCAAACAAGGGAGCAAAAACGAGAGCTGGTCATTCGTATCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig76872:1844..2539+

>mRNA_H-elongata_contig76872.15357.1 ID=mRNA_H-elongata_contig76872.15357.1|Name=mRNA_H-elongata_contig76872.15357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig76872:1844..2539+ (Himanthalia elongata Himel1 dioecious)
GGAGCCACAAGCGCCGCGAAGAAAAATGTCATCACGATTTCTAAGTCTCG
TGAACCGGGCGAAAATGTGCCTCCTCAGCCGCCGTCCCAGTCATTCACGA
AGAAGTCCCGAAGCTCTCGGCGCCGGTCTATCATCATGCCTTCCGAAGCG
AAGCCGTTCGTCGACAGCGAGATCGGCAGCGATGGAGCGCCAGCTCCAGC
AATTGGCACTAGGAGTGCTGCCTCGAAGGCAGCAGCCAAGAGACACACAG
GAGACCGCGATGGAGACAAGCAAGTCCAAGGAATTTCTAAAGGCAACGCC
TTCGGGCTCTCCGACAACAACAATATCAACGGTGGCAAGACGGCGGCGGA
GGAGTTTCCGCTATCCTCGGTTACCGCTACGTCATGCCTGCCACGCTCGC
TGGCGACCCAACGAGGCTGGAAAATGGGCGCGGGAGAATCCTCAAGGGCG
CTGGTACGGGCGTACCATGCAGCCCCTGAGGGTTCTCAAAAAGCGAGGCG
CATCGCTGCACGCCTTTTCTGCTTCACAGGGTTTTGTCTCTTGCCTGTCA
CCCCGGACGACGCTCGCGTGTTGTGCAGTGCTGCGGGAGACAGCTTGGAT
TGGGGTTTAGAAGAGGGAGAGGTACCACGATTGGTGAGCCAGACCTTCCG
CCGCCAAACAAGGGAGCAAAAACGAGAGCTGGTCATTCGTATCAAGGGAG
CCACAAGCGCCGCGAAGAAAAATGTCATCACGATTTCTAAGTCTCGTGAA
CCGGGCGAAAATGTGCCTCCTCAGCCGCCGTCCCAGTCATTCACGAAGAA
GTCCCGAAGCTCTCGGCGCCGGTCTATCATCATGCCTTCCGAAGCGAAGC
CGTTCGTCGACAGCGAGATCGGCAGCGATGGAGCGCCAGCTCCAGCAATT
GGCACTAGGAGTGCTGCCTCGAAGGCAGCAGCCAAGAGACACACAGGAGA
CCGCGATGGAGACAAGCAAGTCCAAGGAATTTCTAAAGGCAACGCCTTCG
GGCTCTCCGACAACAACAATATCAACGGTGGCAAGACGGCGGCGGAGGAG
TTTCCGCTATCCTCGGTTACCGCTACGTCATGCCTGCCACGCTCGCTGGC
GACCCAACGAGGCTGGAAAATGGGCGCGGGAGAATCCTCAAGGGCGCTGG
TACGGGCGTACCATGCAGCCCCTGAGGGTTCTCAAAAAGCGAGGCGCATC
GCTGCACGCCTTTTCTGCTTCACAGGGTTTTGTCTCTTGCCTGTCACCCC
GGACGACGCTCGCGTGTTGTGCAGTGCTGCGGGAGACAGCTTGGATTGGG
GTTTAGAAGAGGGAGAGGTACCACGATTGGTGAGCCAGACCTTCCGCCGC
CAAACAAGGGAGCAAAAACGAGAGCTGGTCATTCGTATCAAG
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