mRNA_H-elongata_contig76870.15356.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76870.15356.1
Unique NamemRNA_H-elongata_contig76870.15356.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig76870.15356.1 vs. uniprot
Match: A0A6H5J832_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J832_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.150e-31
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    1 QVLTATLNMSFNEAIRQSLAPH--APDTSARAAGFVGKSFAFIGLLSGVLQLVVMPWAMLRVSPLLLLSTLPLVAASGCLVTLVFPGFRTSTAAFAATKILD 300
            QVL ATLN+SFNEAIRQ L     + +T A AAGFVG SFA IGL+SG+LQLVVMPWAM+RV+P LLL TLP+VA  G LVT V PGFRT+T AF+ TKIL+
Sbjct:  242 QVLVATLNLSFNEAIRQGLPREEASGETGAGAAGFVGNSFAVIGLVSGILQLVVMPWAMVRVNPSLLLKTLPVVAGGGFLVTFVSPGFRTATVAFSVTKILE 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76870.15356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J832_9PHAE5.150e-3168.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76870contigH-elongata_contig76870:75..779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76870.15356.1prot_H-elongata_contig76870.15356.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76870 75..755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.9806275-CDS-H-elongata_contig76870:74..2491622931172.9806275-CDS-H-elongata_contig76870:74..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76870 75..249 -
1691679728.1614847-CDS-H-elongata_contig76870:74..2491691679728.1614847-CDS-H-elongata_contig76870:74..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76870 75..249 -
1622931173.0112596-CDS-H-elongata_contig76870:654..7551622931173.0112596-CDS-H-elongata_contig76870:654..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76870 655..755 -
1691679728.1747193-CDS-H-elongata_contig76870:654..7551691679728.1747193-CDS-H-elongata_contig76870:654..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76870 655..755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.0349543-UTR-H-elongata_contig76870:755..7791622931173.0349543-UTR-H-elongata_contig76870:755..779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76870 756..779 -
1691679728.1839664-UTR-H-elongata_contig76870:755..7791691679728.1839664-UTR-H-elongata_contig76870:755..779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76870 756..779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76870.15356.1

>prot_H-elongata_contig76870.15356.1 ID=prot_H-elongata_contig76870.15356.1|Name=mRNA_H-elongata_contig76870.15356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MSFNEAIRQSLAPHAPDTSARAAGFVGKSFAFIGLLSGVLQLVVMPWAML
RVSPLLLLSTLPLVAASGCLVTLVFPGFRTSTAAFAATKILD
back to top

mRNA from alignment at H-elongata_contig76870:75..779-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76870.15356.1 ID=mRNA_H-elongata_contig76870.15356.1|Name=mRNA_H-elongata_contig76870.15356.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig76870:75..779- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGACGGCCACCCTCAACATGAGCTTCAATGAGGCCATCAGGCA
AAGCCTGGCGCCGCACGCACCCGACACCAGTGCACGAGCCGCGGGCTTCG
TCGGGAAATCTTTCGCGTTCATTGGGTGAGTCGGGTGTCAGAGCGAAGAC
TCCGTCTCATCCGCGTGTTTCTCGCTGTGTCGAGGAGCTAGTCCCGACCT
TCATACTGTATGCACCTTGCTTCCACTACGAATGCGGTCCCTACACACCA
AACAACAGCATATTGTCGCGTTATTATAGTAGCATGCGTTCCTCTCGCAC
AACGCCGCCGTGCAGCACGCAGCACGCCCCCTCCTTTTTATTTTCCCGCA
CGATCGAGACCCACGCCCTCGACGACCGACCGCTCCGGCGATTTTCGTGC
CAATGTTTTCCCGTAGGCCAGAGACTATGCTTCCAAAAAATATGTTCTTT
ACGACCGCTGGCGCTCCTCGCGGGAACCCCGCTCCACCGCCCCCCTCCCC
CTTGCGATTGTACATGACCTCCTCGGCCAGCTTGCTTTCGGGGGTCTTGC
AGCTGGTGGTGATGCCGTGGGCGATGCTCCGCGTCAGCCCGTTGCTCCTC
CTGAGCACCCTACCTCTGGTGGCGGCCAGCGGCTGCTTGGTTACCTTGGT
GTTCCCTGGGTTTCGAACCTCCACGGCCGCGTTTGCGGCAACGAAGATCC
TCGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76870:75..779-

>mRNA_H-elongata_contig76870.15356.1 ID=mRNA_H-elongata_contig76870.15356.1|Name=mRNA_H-elongata_contig76870.15356.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig76870:75..779- (Himanthalia elongata Himel1 dioecious)
ATGAGCTTCAATGAGGCCATCAGGCAAAGCCTGGCGCCGCACGCACCCGA
CACCAGTGCACGAGCCGCGGGCTTCGTCGGGAAATCTTTCGCGTTCATTG
GATGAGCTTCAATGAGGCCATCAGGCAAAGCCTGGCGCCGCACGCACCCG
ACACCAGTGCACGAGCCGCGGGCTTCGTCGGGAAATCTTTCGCGTTCATT
GGCTTGCTTTCGGGGGTCTTGCAGCTGGTGGTGATGCCGTGGGCGATGCT
CCGCGTCAGCCCGTTGCTCCTCCTGAGCACCCTACCTCTGGTGGCGGCCA
GCGGCTGCTTGGTTACCTTGGTGTTCCCTGGGTTTCGAACCTCCACGGCC
GCGTTTGCGGCAACGAAGATCCTCGACCTTGCTTTCGGGGGTCTTGCAGC
TGGTGGTGATGCCGTGGGCGATGCTCCGCGTCAGCCCGTTGCTCCTCCTG
AGCACCCTACCTCTGGTGGCGGCCAGCGGCTGCTTGGTTACCTTGGTGTT
CCCTGGGTTTCGAACCTCCACGGCCGCGTTTGCGGCAACGAAGATCCTCG
AC
back to top