mRNA_H-elongata_contig7682.15349.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7682.15349.1
Unique NamemRNA_H-elongata_contig7682.15349.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: D7FLL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 1.560e-120
Identity = 177/194 (91.24%), Postives = 187/194 (96.39%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            MSAQQVAPTRMALQ+YKGKL+GAKKGYELLKKKSDALKARFR IAKQIHELKQ MR+DA+T+FFSLTQAAQYV GDFR KVLDTPRPA +RCRARTDNVAGVKLPVF+SYETG+E KDNIGLAGGGQKVGQCR+KYK WVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVI+YINRELDELER
Sbjct:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELER 194
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: A0A836CEZ0_9STRA (ATP synthase subunit D-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ0_9STRA)

HSP 1 Score: 314 bits (805), Expect = 1.960e-106
Identity = 165/194 (85.05%), Postives = 176/194 (90.72%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            MSAQ VAPTRMAL LYKGKLVGAKKGYELLKKKSDALKARFR IAKQI+ELK+ MR+DAS +FFSLTQA QY  GDFR+KVLDTP PA IR R+RTDNVAGVKLP+F  Y TG E  DNIGL+GGGQKV QCREKYKQWVENL+KLASLQTSF+TMDEALKVTNRRVNALENVTIPRMEGVI+YINRELDELER
Sbjct:    1 MSAQ-VAPTRMALTLYKGKLVGAKKGYELLKKKSDALKARFRAIAKQIYELKKQMREDASMAFFSLTQA-QYAAGDFRSKVLDTPHPAAIRVRSRTDNVAGVKLPMFTPYGTGVEVHDNIGLSGGGQKVAQCREKYKQWVENLVKLASLQTSFITMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELER 192
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: F0YKB3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKB3_AURAN)

HSP 1 Score: 244 bits (623), Expect = 7.740e-79
Identity = 125/192 (65.10%), Postives = 155/192 (80.73%), Query Frame = 1 
Query:    7 AQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            A QV PTRMALQ YKGK  GA KG++LLKKK+DALKARFR IAK+I++ K TM +  ST++FSLT AAQY  GDF+ KVL+    A +R   +TDN+AGVK+PVF  ++TGAE+ +NIGLAGGG+K+ +C+EK+   +  L+KLASLQTSFVTMDEALKVTNRRVNALENVT+PR+E  ++YI  ELDELER
Sbjct:    2 ADQVPPTRMALQTYKGKKAGASKGHQLLKKKADALKARFRDIAKEIYKTKGTMSESCSTAYFSLT-AAQYAAGDFKTKVLEGNFVASVRVTGQTDNIAGVKIPVFRQFDTGAEHLENIGLAGGGRKIAECKEKFTNLLAVLVKLASLQTSFVTMDEALKVTNRRVNALENVTLPRIEKTLSYITSELDELER 192
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: A0A7S2V1A2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1A2_9STRA)

HSP 1 Score: 239 bits (610), Expect = 6.820e-77
Identity = 124/195 (63.59%), Postives = 153/195 (78.46%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLD-TPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            MS   VAPTRMAL ++KGK VGAKKG+ELLKKKSDALKAR R I K+I+  K+ + D A T+FFSLTQA QY  GDFR +V+D     A +R   R DNVAGVKLP+F  YE   E K+N+GLAGGG+ +  CR K+K ++ +L++L+SLQTS++TMDEALKVTNRR NALENVTIPR+EG+++YI RELDELER
Sbjct:    1 MSGANVAPTRMALTMFKGKRVGAKKGFELLKKKSDALKARHREIMKEIYRHKKNIADQAQTAFFSLTQA-QYAAGDFRTQVIDGCGNSASMRVHNRIDNVAGVKLPIFMEYEASTEQKENLGLAGGGRAIANCRAKFKAFLVSLVQLSSLQTSYITMDEALKVTNRRCNALENVTIPRIEGILSYIERELDELER 194
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: D0N597_PHYIT (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0N597_PHYIT)

HSP 1 Score: 238 bits (608), Expect = 2.620e-76
Identity = 127/194 (65.46%), Postives = 152/194 (78.35%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            MS+ QVAPTRMAL  +KGK VGAKKG+ELLKKK+DALK RF+ + ++I + K +M  +AS +FFSLTQA QY  GDFR KV+++   A IR + R DNVAGVKLPVF   E   E  +NIGLAGGG K+  CREK++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  I+YI RELDELER
Sbjct:    1 MSSVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELER 193
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: A0A7S1XVP0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVP0_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.970e-75
Identity = 128/196 (65.31%), Postives = 153/196 (78.06%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYET--GAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            M  QQVAPTRMALQLYKGK   A KGY+LLKKKSDALK RFR  AK+I   K +M +D++ +FFSLTQA QY  GDF+  VL+    A +R   RTDNVAGVKLPVF SYET  G    +NIGLAGGG++V Q R+K+K+++  ++ LASLQTSF+T+DEALK+TNRRVNALENVTIPR+E  + YINRELDELER
Sbjct:   57 MGDQQVAPTRMALQLYKGKREAATKGYKLLKKKSDALKVRFRDYAKKIAANKGSMAEDSAGAFFSLTQA-QYAAGDFKLAVLEGNCTASVRIHTRTDNVAGVKLPVFSSYETADGTNASENIGLAGGGRQVQQSRDKFKEFMGKMVTLASLQTSFLTLDEALKITNRRVNALENVTIPRIEATLKYINRELDELER 251
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: W7TG62_9STRA (H-or na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG62_9STRA)

HSP 1 Score: 236 bits (601), Expect = 3.110e-75
Identity = 127/199 (63.82%), Postives = 150/199 (75.38%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAE-----NKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            MS   VAPTRMAL +YK K VGAKKGYELLKKKSDALK RFR I K I   K  M D  S++FFSLTQA QY  GDFR +VL     A +R    TDNVAGVKLPVF  YE  +E     ++DN+GLA GG+++  C+EK+  ++ NL++LASLQTSF+T+DEALKVTNRRVNALENVTIPR+E ++ YINRELDELER
Sbjct:    1 MSGAIVAPTRMALTMYKTKRVGAKKGYELLKKKSDALKVRFRDIMKDIARTKGNMADQGSSAFFSLTQA-QYAAGDFRQQVLQGSLTASVRVHTHTDNVAGVKLPVFRQYELQSEVKSKSDRDNLGLAQGGRQIKACKEKFTVFLTNLVRLASLQTSFITLDEALKVTNRRVNALENVTIPRIEAILAYINRELDELER 198
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BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: A0A5D6Y726_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y726_9STRA)

HSP 1 Score: 236 bits (601), Expect = 4.410e-75
Identity = 126/190 (66.32%), Postives = 147/190 (77.37%), Query Frame = 1 
Query:   13 QVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            QVAPTRMAL  YKGKLV AKKG+ELLKKK+DALK RF+ + ++IH+ K  M ++AS +FFSL+QA QY  GDFR KV+++   A IR   R DNVAGVKLPVF   E   E  DNIGLAGGG K+   REK++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  I YI RELDELER
Sbjct:    4 QVAPTRMALTTYKGKLVAAKKGFELLKKKADALKIRFQAMLREIHKTKMAMSNEASEAFFSLSQA-QYAAGDFRTKVIESVTTAEIRTLNRIDNVAGVKLPVFTEVEVSREKSDNIGLAGGGGKIQNSREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEATIAYIVRELDELER 192
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: A0A8K1CJK3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJK3_PYTOL)

HSP 1 Score: 235 bits (599), Expect = 9.160e-75
Identity = 128/194 (65.98%), Postives = 148/194 (76.29%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            MSA QVAPTRMAL  +KGK V AKKG+ELLKKK+DALK RF+ + ++I + K  M  +AS +FFSLTQA QY  GDFR KV+++   A IR   R DNVAGVKLPVF   E   E  +NIGLAGGG K+  CREK++  V  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  I YI RELDELER
Sbjct:    1 MSAIQVAPTRMALTTFKGKRVAAKKGFELLKKKADALKMRFQAMLREIQKTKMAMATEASDAFFSLTQA-QYAAGDFRTKVIESVTTAEIRLMNRIDNVAGVKLPVFTEVEVTREKTENIGLAGGGGKIQNCREKFRVLVRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTIDYIMRELDELER 193
[Close]
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Match: A0A0P1AP31_PLAHL (H-or na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP31_PLAHL)

HSP 1 Score: 235 bits (599), Expect = 1.110e-74
Identity = 128/194 (65.98%), Postives = 151/194 (77.84%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHELKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVAGVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELER 582
            MSAQ VAPTRMAL  Y+GK VGAKKG+ELLKKK+DALK RF+ + ++I + K  M  +AS +FFSLTQA QY  GDFR KV+++   A IR + R DNVAGVKLPVF   E   E  +NIGLAGGG K+  CREK++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  I+YI RELDELER
Sbjct:    1 MSAQ-VAPTRMALTTYRGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKLAMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELER 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7682.15349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL6_ECTSI1.560e-12091.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEZ0_9STRA1.960e-10685.05ATP synthase subunit D-domain-containing protein n... [more]
F0YKB3_AURAN7.740e-7965.10Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2V1A2_9STRA6.820e-7763.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D0N597_PHYIT2.620e-7665.46H-or Na-translocating F-type, V-type and A-type AT... [more]
A0A7S1XVP0_9STRA2.970e-7565.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TG62_9STRA3.110e-7563.82H-or na-translocating f-v-type and a-type atpase (... [more]
A0A5D6Y726_9STRA4.410e-7566.32Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CJK3_PYTOL9.160e-7565.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AP31_PLAHL1.110e-7465.98H-or na-translocating f-v-type and a-type atpase (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7682contigH-elongata_contig7682:159..4229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.9
Seed ortholog evalue3.9e-94
Seed eggNOG ortholog2880.D7FLL6
Preferred nameVMA8
KEGG koko:K02149
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1394@1,KOG1647@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, V1 complex, subunit D
Ec32 orthologEc-17_000670.1
Exons5
Model size594
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7682.15349.1prot_H-elongata_contig7682.15349.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7682 159..4229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.1040397-CDS-H-elongata_contig7682:158..2691622931172.1040397-CDS-H-elongata_contig7682:158..269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 159..269 -
1691679727.8913803-CDS-H-elongata_contig7682:158..2691691679727.8913803-CDS-H-elongata_contig7682:158..269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 159..269 -
1622931172.122287-CDS-H-elongata_contig7682:907..10451622931172.122287-CDS-H-elongata_contig7682:907..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 908..1045 -
1691679727.9105392-CDS-H-elongata_contig7682:907..10451691679727.9105392-CDS-H-elongata_contig7682:907..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 908..1045 -
1622931172.1401486-CDS-H-elongata_contig7682:1348..14531622931172.1401486-CDS-H-elongata_contig7682:1348..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 1349..1453 -
1691679727.9195566-CDS-H-elongata_contig7682:1348..14531691679727.9195566-CDS-H-elongata_contig7682:1348..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 1349..1453 -
1622931172.168539-CDS-H-elongata_contig7682:3543..36691622931172.168539-CDS-H-elongata_contig7682:3543..3669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 3544..3669 -
1691679727.933956-CDS-H-elongata_contig7682:3543..36691691679727.933956-CDS-H-elongata_contig7682:3543..3669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 3544..3669 -
1622931172.1919875-CDS-H-elongata_contig7682:4115..42291622931172.1919875-CDS-H-elongata_contig7682:4115..4229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 4116..4229 -
1691679727.944377-CDS-H-elongata_contig7682:4115..42291691679727.944377-CDS-H-elongata_contig7682:4115..4229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7682 4116..4229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7682.15349.1

>prot_H-elongata_contig7682.15349.1 ID=prot_H-elongata_contig7682.15349.1|Name=mRNA_H-elongata_contig7682.15349.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MSAQQVAPTRMALQLYKGKLVGAKKGYELLKKKSDALKARFRGIAKQIHE
LKQTMRDDASTSFFSLTQAAQYVEGDFRAKVLDTPRPAVIRCRARTDNVA
GVKLPVFDSYETGAENKDNIGLAGGGQKVGQCREKYKQWVENLIKLASLQ
TSFVTMDEALKVTNRRVNALENVTIPRMEGVITYINRELDELERCVV*
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mRNA from alignment at H-elongata_contig7682:159..4229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7682.15349.1 ID=mRNA_H-elongata_contig7682.15349.1|Name=mRNA_H-elongata_contig7682.15349.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4071bp|location=Sequence derived from alignment at H-elongata_contig7682:159..4229- (Himanthalia elongata Himel1 dioecious)
ATGTCGGCGCAGCAGGTAGCACCGACGCGTATGGCGCTGCAGCTTTACAA
GGGAAAGCTTGTCGGTGCCAAGAAGGGTTACGAGCTCCTCAAAAAGAAGT
CTGATGCCCTCAAGGTGAGCCCGAAGACGCTGCATTTGTGTTCTACAGGG
AGGCATGGGTCTAGCATGGAACGTGGATTGTGGCCTTATGTCAGCTTGTG
TTGTTTCGATTCGTCCCTTGATTGACCCTTGGGCAGCTGTGTATCGTGTT
GCAGTAAGAAATTCGTGCGACAGCAGACATATTAGTAGAGATATAAAAAT
ATATTCCGCTCTTCTGCTTGACTTGTGTGTCCCTCAAGCCGCTTCGAAAG
CGCTCTCGCTATCTTCGATCGTCACTACTAGAAAACTTCAAAGGTCCCCA
AGGCCTCCAACATATTACACCGTGGGTAATCGACCAAGACCAAAATGACC
CTTTTGCGACGAGACTGCTAAATCTATGTCACCTTTGAGGCGAGTGCATG
CCCCACCTCCACCTCCACCTCCTCCCGCCCCCGGTTCACATCCCATCTAT
ATTTATGCAGGCCCGATTTCGCGGAATCGCGAAGCAAATTCATGAGCTGA
AGCAAACAATGCGCGACGATGCTTCGACGTCCTTCTTTTCCCTAACTCAA
GCGGCTCAATACGTTGAGGGCGACTTCAGGGCAAAGGTGAGAGGCATTTT
TCTTATTATTCCTTTTTCCCCCTTTAGATGCTCCGTAGGTGACCTGCCGC
GTGGAGCGTGATGAGGCTGGGTTTCTAACAAGAATCTCGAGGGGGTCAAG
TATGATTGTGGTGCTTCGGTACCACAGTCTCTCTATATTTATTTTCTGTT
ACATACGGGTATGCTCTTGGAGCACCGAGTGCCAGTCTTCAGAGGCGTCG
GGTCGAGGATGTCGAATGTTTTCTGATCTGACCGTATCTTATTTTGAGTC
TTTTCGATTATTTTGTAGAGCAGGTCTTCCTCAACAGCACGGTGGTATAG
GCTTGAAAAAGACGCACCTTGTCGTCAAGATGGACTCATTGGCACACAGC
ATCTTGCTTTCGACGCCTCTAGACCTAAATACACATCAGTACAGTAGGGC
GGACTAAATTAGAAAAAGTTCCTGAAAGTTCAACCATTGGTTTTCACGAA
GAGGTGTAGGCGTGTTGAATTTGCAAGTGTGGTGCCCAAAGCGTAGACGT
GAACCGGGGAGAGACGGGCGGATACATCCCTTGGACCCACAGACAGGATG
GGGCAGCGTTCCGGTAACCTGTTCAATAGAACGGGAAATGCCTCCCATGC
CCATCGGGAGAGGGTGCTCAAAGGTAGCATTTTAATAAAAATACATTTAA
ACCTGACGATAGTTGGTCCTAAAGTTGTCAGTTGAATGGTTCTTGGCAAT
GCGTCGAGGCGTCTTTTTGGAAAATATACTTGTTTTAGTGTTTGGGACGT
ATTCTTGACGCGTCTCTCAAGGGGTTCAACTCTTGTCAACTGACAACTAT
GTTTGTCCCTTGGACTGCATCTCTCACGGCGGTAAGAAGGCGTGGATGTA
TGGAGGTTTGGAATGAGTTATAAGTTTTTTTTAAGAAAAACTATGTATAA
ACACTATCTTAAAGAAGCCAGCATGATGAAACACTACAGTAGAGCCTACC
TGTCGTGTAGAAGCTCCATGCGATGAATGAGAGTCGAGAAACCCACAATA
CGGGTGTCCACGTTGCGTGAGGGATGTCGCACAAGTTTTTTTTGGCGAGA
CAGCAGCACACGGGACATTGGGCTTGTGGTTATGCTACTGACTCTTGTGC
TTAGAGCCCTCGTTATGCTCTCTATCATGAATTTAGCCCCCGGGGGCGTT
TTTGGTAGAAGTCGCGTCGTGTACAGTATCTTCTGTCACGATCTCGGTAA
CGATTGCTCGGCCATTTTCAAGAAACTGCAGTGATCAATGACGGAAAATT
GCACCTATTTTGCTGCCCTTTTCTTCTATCTAGTAAAAAAACACATGCAC
AACAAACACACTTGCGGTGTTCACCACCACGGTGCTCTAAACCCCGCCCG
TACAAAAAGAAAGCGGGGTATTCTCCCTTATGAAGTGGATATACAATCAA
AAACTCAAATGTCGTGTTGAGGAAGTAATCACGCGGATTTATTATTATTT
ATTTATTTTAGTCCCCAGAAGGCCAGGGGTAAAAAGTGTTATTGGTAAGT
CACCTTGTAACCTCGAGATCTGCCTCGGGACCCCCTTGAATCATCAAGTG
TTTTCTGGAAGATAAACAACACGTCATTATTCATCATTCCTCCTCAAAAA
GGTAATGACAGTCCGTCGACCGGTAACCCCCCCCCCCCCAACATTGCTAA
TGCCTTCTAGAATAGCTTGACTCGGTACACGAGTCACCATACCCATTCGG
GCTACCCTCAGATAATCGCGCAGATGGCGGAACGCCACGGGTCGCCCCGC
TGTGGAACGCCTATGCAACATCAACAACAAAGCTATATTTTCTCGTGTTG
GGATTTGTTTTGGTTTCAAAACGTTCATGAGGGCGAGAGGCCATTTTTTC
GTGAAAATTCGCTCGCTAGATCGATCGCTCAGACACGTTTGCGGTGGAAA
TAAGAAGACGACGCCGGCTGGCACGCCACCTTAGGCTATCCACGCTCGTC
GCGGGAAAGGTTCTTTCGGCCTAAGGAGGCAGTCGGCGATCCCTCCCATC
TCGTGAACGACGTGGGGTTTGCCTGCGTAATGTTTTTTTAACGTCGCTGG
TCTGCCGAACGCGTCACGCCGAGCAGGTCCTGGACACCCCGAGGCCAGCC
GTGATCCGCTGCAGGGCTAGGACGGACAACGTGGCGGGTGTGAAGCTTCC
CGTCTTCGATTCGTACGAAACCGGAGCAGAGGTGTGCCGCATCTTTTCTA
TTGGCCTGCAGGCGTACGCGTCGCGGCCCGTGCCACCGAGTACGAGCTTC
GGGCGTTGAAAATCCGCGCGACAGTTTTAGGCCCGAATCTCCGCCGCGAG
AATACCTTTATCACCACTTGCGCCTACCTTCGACCCCCCGCGCCCTCTCT
GGTGCGACCGCGCTGTTCGCGCAGTGGGTAAGGTCATGCGCAGTCTCTCG
TCGTGTGTCTGCTCTGGAGTTTTCACCCCGCTCGTTTCTCTCTGCCTGAA
TGAATATATATGCCTCCTGATCGCACGAGCGCAGAACAAGGATAACATCG
GGCTTGCCGGCGGAGGGCAGAAGGTGGGACAGTGCCGCGAAAAGTACAAG
CAATGGGTGGAGAACCTCATCAAGCTCGCCTCGCTGCAGACCTCCTTCGT
CACCATGGATGAGGCGCTCAAGGTACTTGGAGTACCGCTTGAGATCGTGT
GGCTTGCCCCTTGGACATTTTGGCACGCATGAATTTGGCCACGCCTCAGG
ATCCGCCTTTCTCAGCATCAAAGGGATTTTATTTTATTTTATTTTTATGT
TGAAGGTACTTCCCTAGGAACTGCAGAATACTTTTACCAATAGAGGAACT
ATTAATGTTATAGTTGTAATGAAGAAACGTACCAGGGGCGAAGCGATCAC
GCTTGGTGTGTAGCCAAAATCCGCGCGCATGCGTAGACGAGCGGGAATCG
ATGAATTTTTGTAGCTGGTGTCAGTTTCGAGACGCTGCTGCGAGCGGCTC
TAGCTCTGTGATATGTTGTCTGGAAGACCACTACCGGCTTTGTCGTGCAG
ACCCCCCCCCTCCTCGTGACACTGCGCCTTGTACCCCTGATTTATGCGTG
TGTCAAGAGCATTCTGGACAGAGCGGCCCGGATGTGCACCGTTCGTAGCT
TCTGAGATATAGCATTTCCGCGTCCCGCAGTTATGGCACTTCATTCCGAG
GCTTGCACTCGGTTGGCCATGCATGGTGCGGTATCCCCTCTCCTACGCGT
TCCCTTGCCGCGTGTCATGAATTGCCGCTGTTACGTTTCGTGATGAAACG
CTCTCGGCAGGTGACGAACCGGCGCGTGAACGCGCTGGAGAACGTGACAA
TCCCTCGCATGGAGGGAGTCATCACGTACATCAACAGGGAGCTGGACGAG
CTAGAGAGGTGCGTCGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig7682:159..4229-

>mRNA_H-elongata_contig7682.15349.1 ID=mRNA_H-elongata_contig7682.15349.1|Name=mRNA_H-elongata_contig7682.15349.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig7682:159..4229- (Himanthalia elongata Himel1 dioecious)
ATGTCGGCGCAGCAGGTAGCACCGACGCGTATGGCGCTGCAGCTTTACAA
GGGAAAGCTTGTCGGTGCCAAGAAGGGTTACGAGCTCCTCAAAAAGAAGT
CTGATGCCCTCAAGATGTCGGCGCAGCAGGTAGCACCGACGCGTATGGCG
CTGCAGCTTTACAAGGGAAAGCTTGTCGGTGCCAAGAAGGGTTACGAGCT
CCTCAAAAAGAAGTCTGATGCCCTCAAGGCCCGATTTCGCGGAATCGCGA
AGCAAATTCATGAGCTGAAGCAAACAATGCGCGACGATGCTTCGACGTCC
TTCTTTTCCCTAACTCAAGCGGCTCAATACGTTGAGGGCGACTTCAGGGC
AAAGGCCCGATTTCGCGGAATCGCGAAGCAAATTCATGAGCTGAAGCAAA
CAATGCGCGACGATGCTTCGACGTCCTTCTTTTCCCTAACTCAAGCGGCT
CAATACGTTGAGGGCGACTTCAGGGCAAAGGTCCTGGACACCCCGAGGCC
AGCCGTGATCCGCTGCAGGGCTAGGACGGACAACGTGGCGGGTGTGAAGC
TTCCCGTCTTCGATTCGTACGAAACCGGAGCAGAGGTCCTGGACACCCCG
AGGCCAGCCGTGATCCGCTGCAGGGCTAGGACGGACAACGTGGCGGGTGT
GAAGCTTCCCGTCTTCGATTCGTACGAAACCGGAGCAGAGAACAAGGATA
ACATCGGGCTTGCCGGCGGAGGGCAGAAGGTGGGACAGTGCCGCGAAAAG
TACAAGCAATGGGTGGAGAACCTCATCAAGCTCGCCTCGCTGCAGACCTC
CTTCGTCACCATGGATGAGGCGCTCAAGAACAAGGATAACATCGGGCTTG
CCGGCGGAGGGCAGAAGGTGGGACAGTGCCGCGAAAAGTACAAGCAATGG
GTGGAGAACCTCATCAAGCTCGCCTCGCTGCAGACCTCCTTCGTCACCAT
GGATGAGGCGCTCAAGGTGACGAACCGGCGCGTGAACGCGCTGGAGAACG
TGACAATCCCTCGCATGGAGGGAGTCATCACGTACATCAACAGGGAGCTG
GACGAGCTAGAGAGGTGCGTCGTGTAGGTGACGAACCGGCGCGTGAACGC
GCTGGAGAACGTGACAATCCCTCGCATGGAGGGAGTCATCACGTACATCA
ACAGGGAGCTGGACGAGCTAGAGAGGTGCGTCGTGTAG
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