prot_H-elongata_contig76756.15345.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76756.15345.1
Unique Nameprot_H-elongata_contig76756.15345.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length137
Homology
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BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Match: D8LBJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.010e-59
Identity = 114/156 (73.08%), Postives = 119/156 (76.28%), Query Frame = 0 
Query:    1 GPEWFLSFLLRALEAYRPLLV-------------------GGHAGGVDRLAYFARGLALLARRRLRAQLAPAAADSSLLSHTVEEALAFDQYLDREADYAECPTRFPGRTWPRCVEVFAQDGARFCRWMESDAAAAEAKLAEAAAAPGAWRAVGWK 137
            GPEWFLSFLLRALEAYRPLL+                   G   G VD LAYFARGLALLARRRLRAQL  AAAD SLLSHTVEEALAFD+ LDREA YAECP RFP +TWPRCVEVFAQ   RF RWMESDA AA+AKLAEAAA+PGAWRAV WK
Sbjct:  308 GPEWFLSFLLRALEAYRPLLLLLALPPPAEGAPELEAREAGRGGGSVDPLAYFARGLALLARRRLRAQLGEAAADESLLSHTVEEALAFDRCLDREAGYAECPARFPHQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAAASPGAWRAVDWK 463
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BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Match: A0A6H5JNY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY6_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.060e-59
Identity = 111/155 (71.61%), Postives = 116/155 (74.84%), Query Frame = 0 
Query:    2 PEWFLSFLLRALEAYRPLLV-------------------GGHAGGVDRLAYFARGLALLARRRLRAQLAPAAADSSLLSHTVEEALAFDQYLDREADYAECPTRFPGRTWPRCVEVFAQDGARFCRWMESDAAAAEAKLAEAAAAPGAWRAVGWK 137
            PEWFLSFLLRALEAYRPLL+                   G   G VD LAYFARGLALLARRRLRAQL   AAD SLLSHTVEEALAFD+ LDREA YAECP RFP +TWPRCVEVFAQ   RF RWMESDA AA+AKLAEA A+PGAWRAV WK
Sbjct:  406 PEWFLSFLLRALEAYRPLLLLLELPRPAEGAPELEAREAGWGGGSVDPLAYFARGLALLARRRLRAQLGAVAADESLLSHTVEEALAFDRCLDREAGYAECPARFPRQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAVASPGAWRAVDWK 560
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BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Match: A0A4D9D6Y1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6Y1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.060e-15
Identity = 55/152 (36.18%), Postives = 70/152 (46.05%), Query Frame = 0 
Query:    2 PEWFLSFLLRALEAYRPLLVGGHAGGV--------------DRLAYFARGLALLARRRLRAQLAPAAADSSLLSHTVEEALAFDQYLDREADYAECPT--------RFPGRTWPRCVEVFAQDGARFCRWMESDAAAAEAKLAEAAAAPGAW 131
            PEW  +FLLRAL+  +  L    A                   LA+FAR LAL ARR++RA L   + +   L+   EEALAFD+ LD E  Y  C +            + WPR  +V A    R  RW E +AA     L+    APGAW
Sbjct:  328 PEWVFAFLLRALQLSKSALTDARAEECVGKFMPEVSACMPHPLLAFFARDLALAARRKMRAMLLGGSTEDRALARLGEEALAFDKALDEETGYHRCASPAGVGVVGMVQRQGWPRATDVLAASRQRLERWAEVEAAWVLGSLSRGCEAPGAW 479
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBJ7_ECTSI1.010e-5973.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNY6_9PHAE1.060e-5971.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D6Y1_9STRA8.060e-1536.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007528RINT-1/Tip20PFAMPF04437RINT1_TIP1coord: 2..132
e-value: 8.4E-11
score: 41.4
IPR007528RINT-1/Tip20PANTHERPTHR13520RAD50-INTERACTING PROTEIN 1 RINT-1coord: 2..132
IPR007528RINT-1/Tip20PROSITEPS51386RINT1_TIP20coord: 1..137
score: 16.954
NoneNo IPR availablePANTHERPTHR13520:SF0RAD50-INTERACTING PROTEIN 1coord: 2..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76756contigH-elongata_contig76756:422..2023 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76756.15345.1mRNA_H-elongata_contig76756.15345.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76756 422..2023 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76756.15345.1 ID=prot_H-elongata_contig76756.15345.1|Name=mRNA_H-elongata_contig76756.15345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
GPEWFLSFLLRALEAYRPLLVGGHAGGVDRLAYFARGLALLARRRLRAQL
APAAADSSLLSHTVEEALAFDQYLDREADYAECPTRFPGRTWPRCVEVFA
QDGARFCRWMESDAAAAEAKLAEAAAAPGAWRAVGWK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007528RINT1_Tip20