prot_H-elongata_contig76713.15342.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig76713.15342.1
Unique Name	prot_H-elongata_contig76713.15342.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	99

Homology

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BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.530e-19
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:   73 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 167

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BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-18
Identity = 37/95 (38.95%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD + G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:    9 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGG 103

[Close]

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5L663_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L663_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.530e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            +V ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD+E G L I+   + ++MV ++ + + S IPASPG+DL  + +   GG
Sbjct:   65 IVVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDFEAGTLRISHAAYIDSMVKRFDVQSASRIPASPGVDLGPKRDDMKGG 159

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BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.380e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:  440 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGG 534

[Close]

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.520e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:  216 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 310

[Close]

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.410e-18
Identity = 37/95 (38.95%), Postives = 66/95 (69.47%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP ++ GE + + GCA ERD E G L+I+Q  + ++MV ++ + + S IPASPG+DL  + + + GG
Sbjct:  659 IIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGG 753

[Close]

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.520e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:  929 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1023

[Close]

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.520e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct: 1038 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1132

[Close]

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.580e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct: 1308 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1402

[Close]

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.590e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 95
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct: 1328 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1422

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot

BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JRS6_9PHAE	4.530e-19	40.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KBH1_9PHAE	1.100e-18	38.95	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L663_9PHAE	2.530e-18	40.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K274_9PHAE	5.380e-18	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KTL3_9PHAE	6.520e-18	40.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JBN2_9PHAE	7.410e-18	38.95	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KSG8_9PHAE	7.520e-18	40.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JQW4_9PHAE	7.520e-18	40.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JZQ8_9PHAE	7.580e-18	40.00	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	7.590e-18	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..75 e-value: 3.0E-8 score: 33.6

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig76713	contig	H-elongata_contig76713:50..346 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig76713.15342.1	mRNA_H-elongata_contig76713.15342.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig76713 50..346 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig76713.15342.1 ID=prot_H-elongata_contig76713.15342.1|Name=mRNA_H-elongata_contig76713.15342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWE
NGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGGNDEF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2