prot_H-elongata_contig76710.15341.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76710.15341.1
Unique Nameprot_H-elongata_contig76710.15341.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
BLAST of mRNA_H-elongata_contig76710.15341.1 vs. uniprot
Match: A0A6H5LHA9_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHA9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.270e-6
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 0
Query:    6 WLLDSGATAHPTNSANDMTNIRECQRGMKVASGEIIPIEGYGDLLLKFRSEGDIVPLQLLDVAYVPRL 73
            ++ D+GAT H   +++      EC R ++VA+GE  P+ GYGD+ +   S      L L  VA+VPRL
Sbjct:  253 YVADTGATTHMFANSDGFVRYEECDRRVRVATGETFPMVGYGDVTVTLGSRDGTTDLFLKRVAHVPRL 320          
BLAST of mRNA_H-elongata_contig76710.15341.1 vs. uniprot
Match: A5CB87_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5CB87_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 7.540e-5
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 0
Query:    5 PWLLDSGATAHPTNSANDMTNIREC--QRGMKVASGEIIPIEGYGDLLLKFRSEGDIVPLQLLDVAYVPRLSHHLIS 79
            PW++DSGA+ H TNS+N   +   C   + +++A G   PI G G  L+K  SEG    + L  V +VP+L+ +L+S
Sbjct:  241 PWIIDSGASDHMTNSSNMFESYSPCPGNKKVRIADGNFSPIAGKG--LIKI-SEG----IDLKSVLHVPKLTCNLLS 310          
BLAST of mRNA_H-elongata_contig76710.15341.1 vs. uniprot
Match: A5ARX9_VITVI (ABC transporter domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ARX9_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 7.550e-5
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 0
Query:    5 PWLLDSGATAHPTNSANDMTNIREC--QRGMKVASGEIIPIEGYGDLLLKFRSEGDIVPLQLLDVAYVPRLSHHLIS 79
            PW++DSGA+ H TNS+N   +   C   + +++A G   PI G G  L+K  SEG    + L  V +VP+L+ +L+S
Sbjct:  152 PWIIDSGASDHMTNSSNMFESYSPCPGNKKVRIADGNFSPIAGKG--LIKI-SEG----IDLKSVLHVPKLTCNLLS 221          
BLAST of mRNA_H-elongata_contig76710.15341.1 vs. uniprot
Match: UPI00053FABD5 (uncharacterized protein LOC104881375 isoform X1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=UPI00053FABD5)

HSP 1 Score: 48.9 bits (115), Expect = 9.500e-5
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0
Query:    5 PWLLDSGATAHPTNSANDMTNIREC--QRGMKVASGEIIPIEGYGDLLLKFRSEGDIVPLQLLDVAYVPRLSHHLISL 80
            PW++DSGA+ H TNS+N   +   C   + +++A G   PI G G  L+K  SEG    + L  V +VP+L+ +L+S+
Sbjct:  194 PWIIDSGASDHMTNSSNMFGSYLPCPGNKKVRIADGNFSPIAGKG--LIKI-SEG----IDLKSVLHVPKLTCNLLSI 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76710.15341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LHA9_9PHAE1.270e-638.24CCHC-type domain-containing protein (Fragment) n=1... [more]
A5CB87_VITVI7.540e-538.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5ARX9_VITVI7.550e-538.96ABC transporter domain-containing protein n=1 Tax=... [more]
UPI00053FABD59.500e-538.46uncharacterized protein LOC104881375 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76710contigH-elongata_contig76710:2447..2695 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76710.15341.1mRNA_H-elongata_contig76710.15341.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76710 2447..2695 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76710.15341.1 ID=prot_H-elongata_contig76710.15341.1|Name=mRNA_H-elongata_contig76710.15341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MGDEPWLLDSGATAHPTNSANDMTNIRECQRGMKVASGEIIPIEGYGDLL
LKFRSEGDIVPLQLLDVAYVPRLSHHLISLQTV
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