mRNA_H-elongata_contig76646.15336.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: D7G8Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y6_ECTSI) HSP 1 Score: 306 bits (785), Expect = 5.050e-97 Identity = 163/285 (57.19%), Postives = 211/285 (74.04%), Query Frame = 1
Query: 16 SRVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSEMELLGEAIPSMLATAGRVTHTHFKMSLNCSKAK-DAGIPLTVTWPLNSTAYAYSSTKEHVIGTTSAATSLNYSARVVLAGLAGYGGFLLGMYEVDRRGLMDLYHEGAIILVLEIVCIISALIVYDWIIIMIQKNMGQSTSSSQFPSNA---------ESKMDLEEPSGR---SVTYSVQRGRTPTTTILNEEAKLAKEKGMHSVKVLVSGPNSLVNAVLAESREINWQLFETEAYSFEF 831
SRV++VAGGSGMTS MGF+QDW +AA EGA VP ++L WCCR +SEMEL+GE +PS+LA+AG THF MSL CS +K D+ LTVTWPL++ AYA++ST+++VIGT A SLN+S RVV+AGLA + G++LG +EVDRR LM+++HEGAII VL ++CIIS+LIVYDW+ +++K++ S S A ESKMDLE + SVTY V GR PT +L EA+LAK+ SV+VL SGPNSLV+ VLAESR I+W+LF+TEA+SFEF
Sbjct: 349 SRVMVVAGGSGMTSLMGFIQDWAVAAREGADVPEVNLAWCCRYMSEMELVGECLPSVLASAGSKKDTHFSMSLYCSSSKADSNESLTVTWPLDANAYAHTSTQDNVIGTGHVAASLNHSVRVVVAGLAAFAGYILGYWEVDRRDLMNVFHEGAIIFVLMVICIISSLIVYDWLFFLVRKHLLGKRVDSAEASQAGGRSARVGEESKMDLESSTVAGVGSVTYDVNPGRVPTQALLIREAELAKKSNTSSVRVLTSGPNSLVDGVLAESRAIDWKLFDTEAFSFEF 633
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: D7FGP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP2_ECTSI) HSP 1 Score: 306 bits (785), Expect = 8.940e-97 Identity = 162/285 (56.84%), Postives = 214/285 (75.09%), Query Frame = 1
Query: 16 SRVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSEMELLGEAIPSMLATAGRVTHTHFKMSLNCSKAK-DAGIPLTVTWPLNSTAYAYSSTKEHVIGTTSAATSLNYSARVVLAGLAGYGGFLLGMYEVDRRGLMDLYHEGAIILVLEIVCIISALIVYDWIIIMIQKNM----GQSTSSSQFPSNA-----ESKMDLEEPSGR---SVTYSVQRGRTPTTTILNEEAKLAKEKGMHSVKVLVSGPNSLVNAVLAESREINWQLFETEAYSFEF 831
SRV++VAGGSGMTS MGF+QDW +AA EGA VP ++L WCCR +SEMEL+GE +PS+LA+AG THF MSL CS +K D+ LTVTWPL++ AYA++ST+++VIGT A SLN+S RV++AGLA + G++LG +EVDRR LM+++HEGAII VL ++CIIS+LIVYDW+ +++K++ S +SQ + ESKMDLE + SVTY+V GR PT +L EA+LAK+ SV+VL SGPNSLV+ VLAESR I+W+LF+TEA+SFEF
Sbjct: 372 SRVMVVAGGSGMTSLMGFIQDWAVAAREGADVPEVNLAWCCRYMSEMELVGECLPSVLASAGSKKDTHFSMSLYCSSSKADSNESLTVTWPLDANAYAHTSTQDNVIGTGHVAASLNHSVRVIVAGLAAFAGYILGYWEVDRRDLMNVFHEGAIIFVLMVICIISSLIVYDWLFFLVRKHLLGKRVDSAEASQASGRSARVGEESKMDLESSTVAGVGSVTYNVNPGRVPTQALLIREAELAKKSNTSSVRVLTSGPNSLVDGVLAESRAIDWKLFDTEAFSFEF 656
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: D7G5Y8_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G5Y8_ECTSI) HSP 1 Score: 306 bits (784), Expect = 4.280e-95 Identity = 162/285 (56.84%), Postives = 213/285 (74.74%), Query Frame = 1
Query: 16 SRVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSEMELLGEAIPSMLATAGRVTHTHFKMSLNCSKAK-DAGIPLTVTWPLNSTAYAYSSTKEHVIGTTSAATSLNYSARVVLAGLAGYGGFLLGMYEVDRRGLMDLYHEGAIILVLEIVCIISALIVYDWIIIMIQKNM----GQSTSSSQFPSNA-----ESKMDLEEPSGR---SVTYSVQRGRTPTTTILNEEAKLAKEKGMHSVKVLVSGPNSLVNAVLAESREINWQLFETEAYSFEF 831
SRV++VAGGSGMTS MGF+QDW +AA EGA VP ++L WCCR +SEMEL+GE +PS+LA+AG THF MSL CS +K D+ LTVTWPL++ AYA++ST+++VIGT A SLN+S RV++AGLA + G++LG +EVDRR LM+++HEGAII VL ++CIIS+LIVYDW+ +++K++ S +SQ + ESKMDLE + SVTY V GR PT +L EA+LAK+ SV+VL SGPNSLV+ VLAESR I+W+LF+TEA+SFEF
Sbjct: 530 SRVMVVAGGSGMTSLMGFIQDWAVAAREGADVPEVNLAWCCRYMSEMELVGECLPSVLASAGSKKDTHFSMSLYCSSSKADSNESLTVTWPLDANAYAHTSTQDNVIGTGHVAASLNHSVRVIVAGLAAFAGYILGYWEVDRRDLMNVFHEGAIIFVLMVICIISSLIVYDWLFFLVRKHLLGKRVDSAEASQASGRSARVGEESKMDLESSTVAGVGSVTYDVNPGRVPTQALLIREAELAKKSNTSSVRVLTSGPNSLVDGVLAESRAIDWKLFDTEAFSFEF 814
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: D8LNK5_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK5_ECTSI) HSP 1 Score: 254 bits (649), Expect = 5.500e-76 Identity = 145/289 (50.17%), Postives = 193/289 (66.78%), Query Frame = 1
Query: 1 MKSEVSRVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSEMELLGEAIPSMLATAGRVTHTHFKMSLNCSKAKDAGIPLTVTWPLNSTAYAYSSTKEHVIGTTSAATSLNYSARVVLAGLAGYGGFLLGMYEVDRRGLMDLYHEGAIILVLEIVCIISALIVYDWIIIMIQ----KNMGQSTSSSQFPSNA--------ESKMDLEEPSGRSVTYSVQRGRTPTTTILNEEAKLAKEKGMHSVKVLVSGPNSLVNAVLAESREINWQLFETEAYSFEF 831
MK SRVV++AGGSG+TS MGF+QDWC+ AA G+ VP +HL WCCR + EM+L+GE+IPSMLA+AG +HF +SL C+ +K PL+V+WP+N AY S E V+G A SLN+S R++LAG A YG ++LG ++V RRG YH G LVL IVCI+SALIVYDW+ + K+ G S++ + PS A E K D E S + Y V R R PT +L +EA+LAK+KG SVKVL SGP +LV+ VLA++R ++WQLF+TE S++F
Sbjct: 446 MKRGASRVVIIAGGSGVTSVMGFIQDWCVVAAAGSVVPEVHLAWCCRTMVEMQLVGESIPSMLASAGSKKGSHFTLSLYCT-SKTGTDPLSVSWPVNCNAYGGLS-MEQVMGKNPIAASLNHSVRILLAGGAAYGAYVLGTFDVARRGERG-YHSGGTRLVLMIVCIVSALIVYDWLAYFVLTFPCKDSGFSSAQTH-PSYASKAAVIHNEPKQDALE-SSATTAYDVLRQRVPTRALLVQEAELAKKKGHRSVKVLTSGPQALVDGVLADARAVDWQLFDTEELSYQF 729
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: D7G4X0_ECTSI (Ferric chelate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X0_ECTSI) HSP 1 Score: 162 bits (411), Expect = 2.050e-42 Identity = 109/290 (37.59%), Postives = 152/290 (52.41%), Query Frame = 1
Query: 19 RVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSEMELLGEAIPSMLATAGRVTHTHFKMSLNCSKAKDAGIPLTVTWPLNSTAYAYSSTKEHVIGTTSAAT-SLNYSARVVLAGLAGYGGFLLGMYEVDRRGLMDLYHEGAIILVLEIVCIISALIVYDWII-IMIQKNMGQSTSSSQFPSNAESKMDLEEPS------------------GRSVTYSVQRGRTPTTTILNEEAKLAKEKGMHSVKVLVSGPNSLVNAVLAESREINWQLFETEAYSFE 828
+VVL AGGSG+TSF +QDWC A + G VPA+HLVW CR +SE+ELLGEA+PS LA A + FKMS+ CS P TV+WP+ + + H T+ A S N R ++AG GG L G + + L EG +LVL + S L+VYDWI ++I + + ++ E+ D +EP G T+ V GR P +L E + A +G+ VKVLVSGP +V+AV+ E+R I+W++F+ E S E
Sbjct: 326 KVVLFAGGSGVTSFTALIQDWCEAYSGGEDVPAVHLVWSCRRMSEIELLGEALPSFLAAAAAGAESLFKMSMFCSGKTGGDSPETVSWPIFKASEHLG--RVHATPTSQAVIDSFNNGVRTLIAG----GGALAGWFWAENVAQGALL-EGVAVLVLMTIVPASLLVVYDWISSLLIGVLIAKKPFRKRYSQLRETAADRDEPDVAVGGQGENINRGGGGGRGALKTFPVSAGRMPVHGVLLSEQENASREGIDRVKVLVSGPGGMVDAVMTEARRISWKVFDVETASRE 608
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: A0A6H5KRK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK1_9PHAE) HSP 1 Score: 157 bits (398), Expect = 4.360e-40 Identity = 112/292 (38.36%), Postives = 151/292 (51.71%), Query Frame = 1
Query: 19 RVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSEMELLGEAIPSMLATAGRVTHTHFKMSLNCSKAKDAGIPLTVTWPLNSTAYAYSSTKEHV-IGTTSAAT--SLNYSARVVLAGLAGYGGFLLGMYEVDRRGLMDLYHEGAIILVLEIVCIISALIVYDWII-IMIQKNMGQSTSSSQFPSNAESKMDLEEPS------------------GRSVTYSVQRGRTPTTTILNEEAKLAKEKGMHSVKVLVSGPNSLVNAVLAESREINWQLFETEAYSFE 828
RVVL AGGSG+TSF +QDWC A + G VPA+HLVW CR +SE+ELLGEAIPS LA A + F MS+ CS P TV+W + + S HV TS A SLN R ++AG GG L G + + L EG +LVL + S L+VY WI ++I + + ++ E+ D +EP G T+ V GR P +L E + A +G+ VKVLVSGP +V+AV+ E+R I+W++F+ E S E
Sbjct: 480 RVVLFAGGSGVTSFTTLIQDWCEAYSGGEDVPAVHLVWSCRSMSEIELLGEAIPSFLAAAPAGAESLFNMSMFCSGKTGGDSPETVSWSI----FKASEHLGHVHANPTSQAVIDSLNNGVRTLIAGECR-GGALAGWFWAENLAQGALL-EGVAVLVLMTIVPASLLVVYGWISSLLIGALIAKKPFRKRYSQLRETAADRDEPDVAVGGQGENINPGGGGGRGARKTFPVSAGRMPVHEVLLSEQENASREGIDRVKVLVSGPRGMVDAVMMEARRISWKVFDVETASRE 765
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: D7FK19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK19_ECTSI) HSP 1 Score: 124 bits (311), Expect = 1.480e-28 Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query: 19 RVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSEMELLGEAIPSMLATAGRVTHTHFKMSLNCS 243
RVV+V GGSGMTS GF+QDWC+AAAEGASVP +H+ WCCR LSEMEL+GEA+PS+LA AGR THF MSL CS
Sbjct: 513 RVVIVTGGSGMTSVFGFIQDWCVAAAEGASVPEVHMAWCCRTLSEMELVGEALPSLLAGAGRAKDTHFSMSLYCS 587
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: D7FP58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP58_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.380e-27 Identity = 58/128 (45.31%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 454 LYHEGAIILVLEIVCIISALIVYDWIIIMIQKNMGQSTSSSQFPSNAES-KMDLEEPSGRS-VTYSVQRGRTPTTTILNEEAKLAKEKGMHSVKVLVSGPNSLVNAVLAESREINWQLFETEAYSFEF 831
+YHEG IIL+L+I+C++S +I+Y WI + ++ + E KMDLE S V Y V+RGR PT +L +EA+LA++ G VKV+ SGP S+V+ VLA +RE++W+LF+TE +SFEF
Sbjct: 1 MYHEGGIILLLQIICMVSTVIIYGWIRDLFKRGRDSDAQVGESARTTEEFKMDLEASSADGCVAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF 128
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Match: A0A6H5KD42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD42_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 1.310e-9 Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = -2
Query: 75 KWVCVTRPAVASIDGMASPRSSISDKSRQHQTR*IAGTDAPSAAAMHQS 221
KWV TRPA AS DG ASP SSIS++ RQH +GT+APSAAA HQS
Sbjct: 3 KWVSFTRPAPASRDGRASPTSSISERVRQHHAMCTSGTEAPSAAATHQS 51 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76646.15336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76646.15336.1 >prot_H-elongata_contig76646.15336.1 ID=prot_H-elongata_contig76646.15336.1|Name=mRNA_H-elongata_contig76646.15336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp MKSEVSRVVLVAGGSGMTSFMGFVQDWCIAAAEGASVPAIHLVWCCRDLSback to top mRNA from alignment at H-elongata_contig76646:483..2095+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76646.15336.1 ID=mRNA_H-elongata_contig76646.15336.1|Name=mRNA_H-elongata_contig76646.15336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1613bp|location=Sequence derived from alignment at H-elongata_contig76646:483..2095+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76646:483..2095+ >mRNA_H-elongata_contig76646.15336.1 ID=mRNA_H-elongata_contig76646.15336.1|Name=mRNA_H-elongata_contig76646.15336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig76646:483..2095+ (Himanthalia elongata Himel1 dioecious)back to top |