mRNA_H-elongata_contig76638.15334.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76638.15334.1
Unique NamemRNA_H-elongata_contig76638.15334.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.450e-24
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    7 TFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            TFG+GGYGFKASEKL KVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD
Sbjct:  358 TFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 410
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BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.850e-24
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    7 TFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            TFG+GGYGFKASEKL KVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD
Sbjct:  467 TFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 519
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BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.490e-18
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    7 TFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 156
            TFG GGYG KASEKLM VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  422 TFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471
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BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 4.990e-16
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    7 TFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            TFG  GYG KASE L+KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct:  189 TFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241
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BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: UPI000711FA18 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711FA18)

HSP 1 Score: 72.8 bits (177), Expect = 1.990e-15
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    4 ATFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            AT+GK GYG KAS+ L+KVRGKDFR EKTKKKRG+Y GG ISM   S +FDD +
Sbjct:   44 ATYGKEGYGAKASDILIKVRGKDFRREKTKKKRGNYSGGRISMEVKSTRFDDDE 97
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BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.970e-14
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    7 TFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 159
            TFG+ GYG+KA + L+ VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  470 TFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
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BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: R0GRD6_9BRAS (LisH domain-containing protein n=1 Tax=Capsella rubella TaxID=81985 RepID=R0GRD6_9BRAS)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   22 GYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            GYG+KA E L +VRG+DFRHEKTKKKRGSYRGGEI + S+S KFD+SD
Sbjct:  254 GYGYKAQEILGQVRGRDFRHEKTKKKRGSYRGGEIDLQSHSFKFDNSD 301
[Close]
BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 3.140e-14
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    7 TFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            TFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  228 TFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280
[Close]
BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: A0A392NMJ8_9FABA (Nucleolar and coiled-body phosphoprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NMJ8_9FABA)

HSP 1 Score: 68.2 bits (165), Expect = 4.730e-14
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   22 GYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            GYG KA E L +VRG+DFRHEKTKKKRG+YRGG I ++S+SVKF+ SD
Sbjct:    7 GYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGHIDLHSHSVKFNYSD 54
[Close]
BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Match: A0A565CRC8_9BRAS (LisH domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CRC8_9BRAS)

HSP 1 Score: 73.2 bits (178), Expect = 6.840e-14
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   22 GYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 165
            GYG KA E L +VRG+DFRHEKTKKKRGSYRGGEI + S+SVKFD SD
Sbjct:  292 GYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGEIDLQSHSVKFDYSD 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76638.15334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI1.450e-2496.23LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE2.850e-2496.23LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9D037_9STRA7.490e-1882.00SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S3Y1Y8_HETAK4.990e-1673.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000711FA181.990e-1568.52hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A836CH62_9STRA1.970e-1472.55SRP40, C-terminal domain-containing protein n=1 Ta... [more]
R0GRD6_9BRAS1.990e-1475.00LisH domain-containing protein n=1 Tax=Capsella ru... [more]
A0A061RD47_9CHLO3.140e-1469.81SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A0A392NMJ8_9FABA4.730e-1470.83Nucleolar and coiled-body phosphoprotein (Fragment... [more]
A0A565CRC8_9BRAS6.840e-1477.08LisH domain-containing protein n=1 Tax=Arabis nemo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76638contigH-elongata_contig76638:2143..2310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D7FH06
Preferred nameSRP40
KEGG koko:K10771,ko:K11294
KEGG Pathwayko03410,ko05130,map03410,map05130
KEGG ModuleM00296
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.RNA polymerase I core binding
EggNOG OGsKOG2992@1,KOG2992@2759
Ec32 ortholog descriptionSRP40, C-terminal
Ec32 orthologEc-26_003010.1
EC4.2.99.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.7465677-CDS-H-elongata_contig76638:2142..23101622931170.7465677-CDS-H-elongata_contig76638:2142..2310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76638 2143..2310 +
1691679727.3263874-CDS-H-elongata_contig76638:2142..23101691679727.3263874-CDS-H-elongata_contig76638:2142..2310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76638 2143..2310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76638.15334.1prot_H-elongata_contig76638.15334.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76638 2143..2310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76638.15334.1

>prot_H-elongata_contig76638.15334.1 ID=prot_H-elongata_contig76638.15334.1|Name=mRNA_H-elongata_contig76638.15334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
KATFGKGGYGFKASEKLMKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVK
FDDSD*
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mRNA from alignment at H-elongata_contig76638:2143..2310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76638.15334.1 ID=mRNA_H-elongata_contig76638.15334.1|Name=mRNA_H-elongata_contig76638.15334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig76638:2143..2310+ (Himanthalia elongata Himel1 dioecious)
AAGGCCACATTCGGGAAAGGCGGGTACGGCTTCAAGGCCAGCGAAAAGCT
AATGAAGGTGCGGGGGAAGGACTTCCGACACGAAAAGACGAAGAAGAAGC
GCGGCAGTTACCGAGGCGGAGAAATCTCGATGAACAGTTACTCGGTGAAG
TTCGATGACAGCGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig76638:2143..2310+

>mRNA_H-elongata_contig76638.15334.1 ID=mRNA_H-elongata_contig76638.15334.1|Name=mRNA_H-elongata_contig76638.15334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig76638:2143..2310+ (Himanthalia elongata Himel1 dioecious)
AAGGCCACATTCGGGAAAGGCGGGTACGGCTTCAAGGCCAGCGAAAAGCT
AATGAAGGTGCGGGGGAAGGACTTCCGACACGAAAAGACGAAGAAGAAGC
GCGGCAGTTACCGAGGCGGAGAAATCTCGATGAACAGTTACTCGGTGAAG
TTCGATGACAGCGACTGAAAGGCCACATTCGGGAAAGGCGGGTACGGCTT
CAAGGCCAGCGAAAAGCTAATGAAGGTGCGGGGGAAGGACTTCCGACACG
AAAAGACGAAGAAGAAGCGCGGCAGTTACCGAGGCGGAGAAATCTCGATG
AACAGTTACTCGGTGAAGTTCGATGACAGCGACTGA
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