prot_H-elongata_contig76611.15332.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76611.15332.1
Unique Nameprot_H-elongata_contig76611.15332.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length147
Homology
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 5.660e-78
Identity = 123/141 (87.23%), Postives = 134/141 (95.04%), Query Frame = 0
Query:    7 YERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAYMH 147
            Y+RY EGPPRLGW+FNM+PTS+PDASGNE+SGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERY+Q+CIQ IRRRFEDSAVEV V DKEDL+MPNHLSGKLRRFLKLSFHSVADLM+VK+ LMPTIQANK R E+QDAYMH
Sbjct:   84 YDRYSEGPPRLGWIFNMLPTSIPDASGNEKSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYIQDCIQCIRRRFEDSAVEVTVVDKEDLDMPNHLSGKLRRFLKLSFHSVADLMEVKRALMPTIQANKTRAEAQDAYMH 224          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: D7FPA2_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPA2_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 9.820e-64
Identity = 93/108 (86.11%), Postives = 101/108 (93.52%), Query Frame = 0
Query:    1 PLAKPRYERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLR 108
            P A P Y+RY EGPPRLGW+FNM+PTS+PDASGNE+SGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERY+Q+CIQ IRRRFEDSAVEV V DKEDL+MPNHLSGKLR
Sbjct:   27 PRACPWYDRYSEGPPRLGWIFNMLPTSIPDASGNEKSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYIQDCIQCIRRRFEDSAVEVTVVDKEDLDMPNHLSGKLR 134          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A6H5JC65_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC65_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 5.670e-63
Identity = 109/179 (60.89%), Postives = 119/179 (66.48%), Query Frame = 0
Query:   23 MMPTSLPDASGNERSGLDMYFLEQDGGTFKATV------------------------------------------------------FYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAYMH 147
            M+PTS+PDASGNE+SGLDMYFLEQDGGTFKATV                                                      FYKPYFYVLVKEER++Q+CIQ IRRRFEDSAVEV V DKEDL+MPNHLSGKLRRFLKLSFHSVADLM+VK+ LMPTIQANK R E+QDAYMH
Sbjct:    1 MLPTSIPDASGNEKSGLDMYFLEQDGGTFKATVRTCRDRRAITCTHVCTKLSRPTAPNLFRSSRPNENLSHFMFALWRRSFLFSTKVFYKPYFYVLVKEERHIQDCIQCIRRRFEDSAVEVTVVDKEDLDMPNHLSGKLRRFLKLSFHSVADLMEVKRALMPTIQANKTRAEAQDAYMH 179          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.380e-43
Identity = 68/132 (51.52%), Postives = 104/132 (78.79%), Query Frame = 0
Query:    7 YERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKR 138
            Y R++EG PRLGW+ +M  +++PD  G ERSG+D+YFL+QDG TFK T FY+PYFY+ ++++RY+ E +Q ++R+F+   + +   DKEDL++PNHLSGKL RFL+LSF +V++LM+V+  L+P ++ NK+R
Sbjct:   69 YSRFEEGSPRLGWLLDMNASTVPDEEGRERSGMDLYFLQQDGDTFKVTTFYEPYFYIGLRDDRYIAEVVQLLQRKFDQVGMTILACDKEDLDLPNHLSGKLHRFLRLSFFNVSELMEVRSVLLPLVERNKQR 200          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A812Q0Y1_9DINO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q0Y1_9DINO)

HSP 1 Score: 136 bits (343), Expect = 1.900e-34
Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = 0
Query:    7 YERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKR 138
            YE + EGPPR+G++ NM+PTS+ +    ERS LD+YFL+QDG TFKA + Y+PYFYV V   R+ +E    + R+FE     V+ A+ EDL++PNHLSG  R  LKL F SV +LM+V+  L P +QANK+R
Sbjct:   58 YETFTEGPPRVGYLTNMLPTSVANEDRIERSALDLYFLQQDGATFKAQLVYQPYFYV-VCAARWCKEVTALLERKFESLIAGVSTAEMEDLDLPNHLSGIKRTLLKLEFRSVQELMEVRNELQPIVQANKRR 188          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A2G5BKN9_COERN (DNA polymerase epsilon catalytic subunit n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BKN9_COERN)

HSP 1 Score: 126 bits (317), Expect = 6.230e-31
Identity = 68/146 (46.58%), Postives = 95/146 (65.07%), Query Frame = 0
Query:    3 AKPRYERYKEGPPRLGWMFNMMPTSLPDASGNE-RSGLDMYFLEQDGGTFKATVFYKPYFYVLVK--EERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 145
            +K  + RY+EGP RLGW+ NM  TS+PD   N  +S +D YFLEQDGG+FK T+ +KPYFY++     E  V+E +    RRF+     V   ++EDL+M NHL+G  RR +K+ F +V DL+ V++ L P IQ N KR+E  +AY
Sbjct:   31 SKLGFGRYQEGPQRLGWLVNMHATSVPDEERNSTKSAVDYYFLEQDGGSFKCTLLFKPYFYIICTPGSEAEVEEWLV---RRFDRLVDHVESVEREDLQMTNHLTGCKRRLVKIVFRNVQDLLSVRRELQPIIQRNSKRSELVNAY 173          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A2R5GVQ4_9STRA (DNA-directed DNA polymerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVQ4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.160e-30
Identity = 63/144 (43.75%), Postives = 96/144 (66.67%), Query Frame = 0
Query:    7 YERYKEGPPRLGWMFNMMPTSLPDASGN-----ERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 145
            ++ + EGP R+GW+ NM+P ++           E S L++YFL+QDG TFKA + ++PYFYVLVKEE +++E    + RRF     EVA+ D+EDL+M +HL+GK R  L+L F +V DLM+V+  +   ++ NK R+++ DAY
Sbjct:   55 FDDFTEGPARVGWLLNMLPCTVNFVDPTLEKPVELSALELYFLQQDGNTFKAKILHRPYFYVLVKEE-FLKETKAMLERRFASDVSEVAMVDREDLDMADHLAGKHRVLLQLFFRNVNDLMNVRLEVQEAVRVNKSRSKAADAY 197          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: UPI001D0475A3 (DNA polymerase epsilon catalytic subunit n=1 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D0475A3)

HSP 1 Score: 122 bits (307), Expect = 1.380e-29
Identity = 62/140 (44.29%), Postives = 91/140 (65.00%), Query Frame = 0
Query:    7 YERYKEGPPRLGWMFNMMPTSLPDAS-GNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 145
            + RY  G  ++GW+ NM  T++ D      R+G++ YF+E DGGTFKATV Y PYF + V++ +   E  +  RRRFE    +V   +KEDL+MPNHL G  R FL+L+FH+V+DL++V++ +MP  + NKK   + D Y
Sbjct:   62 FARYDSGRRKIGWLCNMHSTTIEDEKIPGGRAGVEFYFIEDDGGTFKATVQYDPYFLIAVRKGKEA-EVEEWCRRRFEGLVKDVERVEKEDLQMPNHLLGYRRMFLQLAFHNVSDLLNVRRDIMPIAEKNKKNMNAMDTY 200          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A0N1P2H3_9EURO (DNA polymerase epsilon catalytic subunit n=1 Tax=Phialophora attinorum TaxID=1664694 RepID=A0A0N1P2H3_9EURO)

HSP 1 Score: 122 bits (306), Expect = 1.880e-29
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 0
Query:    7 YERYKEGPPRLGWMFNMMPTSLPD---ASGNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 145
            + R+  G  R+GW++NM  TS+PD   A+G  R+G+D YF+ +DG  FKATV Y PYF + VK  R  QE  +  +R FE     V+  +KEDL MPNHL G  R FLKL+F SV+DLM V+K +MP  + NK++  + D Y
Sbjct:   60 FPRFDSGRKRVGWLYNMHSTSIPDSRIAAG--RAGVDFYFIGEDGHNFKATVEYDPYFLIAVKRGR-EQEVEEWCKRMFEGMVKTVSKIEKEDLSMPNHLLGYRRTFLKLTFPSVSDLMSVRKVIMPIAERNKEKITAMDTY 198          
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Match: A0A6A6HB66_9PEZI (DNA polymerase epsilon catalytic subunit n=1 Tax=Viridothelium virens TaxID=1048519 RepID=A0A6A6HB66_9PEZI)

HSP 1 Score: 122 bits (305), Expect = 2.570e-29
Identity = 63/140 (45.00%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    7 YERYKEGPPRLGWMFNMMPTSLPDAS-GNERSGLDMYFLEQDGGTFKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMPNHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAY 145
            + R++ G  R+GW+ NM  TS+ D      R+G+D YF+E+DGGTFK T+ Y PYF + VK+ +   E  +  RR+FE     +   +KEDL+MPNHL G  R FLKLSF +V DL+ V+K +MP  + NKK   + D Y
Sbjct:   61 FARFEAGKRRIGWLCNMHSTSVEDQKIPGGRAGVDFYFIEEDGGTFKTTLEYDPYFLIAVKKSK-EPEVEEWCRRQFEGLVKNIKKVEKEDLQMPNHLLGYRRSFLKLSFANVGDLLSVRKTIMPIAEKNKKNLSAMDTY 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76611.15332.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQC0_ECTSI5.660e-7887.23DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
D7FPA2_ECTSI9.820e-6486.11DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A6H5JC65_9PHAE5.670e-6360.89DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
W7TVX1_9STRA1.380e-4351.52DNA-directed DNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A812Q0Y1_9DINO1.900e-3451.52DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A2G5BKN9_COERN6.230e-3146.58DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
A0A2R5GVQ4_9STRA2.160e-3043.75DNA-directed DNA polymerase n=1 Tax=Hondaea fermen... [more]
UPI001D0475A31.380e-2944.29DNA polymerase epsilon catalytic subunit n=1 Tax=B... [more]
A0A0N1P2H3_9EURO1.880e-2947.18DNA polymerase epsilon catalytic subunit n=1 Tax=P... [more]
A0A6A6HB66_9PEZI2.570e-2945.00DNA polymerase epsilon catalytic subunit n=1 Tax=V... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.342.10coord: 30..145
e-value: 2.7E-7
score: 32.3
NoneNo IPR availablePANTHERPTHR10670:SF0DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 6..146
IPR006133DNA-directed DNA polymerase, family B, exonuclease domainPFAMPF03104DNA_pol_B_exo1coord: 45..138
e-value: 2.4E-9
score: 36.8
IPR029703DNA polymerase epsilon catalytic subunitPANTHERPTHR10670DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 6..146
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 38..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76611contigH-elongata_contig76611:467..1923 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76611.15332.1mRNA_H-elongata_contig76611.15332.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76611 467..1923 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76611.15332.1 ID=prot_H-elongata_contig76611.15332.1|Name=mRNA_H-elongata_contig76611.15332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
PLAKPRYERYKEGPPRLGWMFNMMPTSLPDASGNERSGLDMYFLEQDGGT
FKATVFYKPYFYVLVKEERYVQECIQAIRRRFEDSAVEVAVADKEDLEMP
NHLSGKLRRFLKLSFHSVADLMDVKKGLMPTIQANKKRTESQDAYMH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006133DNA-dir_DNA_pol_B_exonuc
IPR029703POL2
IPR012337RNaseH-like_sf