mRNA_H-elongata_contig7661.15331.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE) HSP 1 Score: 445 bits (1145), Expect = 9.700e-139 Identity = 367/971 (37.80%), Postives = 457/971 (47.06%), Query Frame = 1
Query: 130 TPQGSRFVECPLCSKYFHSCLAQSHVDECLSVYAEARGRPSSPLKTTQTQLVPSPRNS--EDSSIRSPNGEAGRASEGYIAPLVSSALHCEEYEVMPLRLLRISGG------GSMWAGESARKVRRGKGNSNNSGSMINSNNDSIDITSSGNENNTPVATASQSTA-TGDISSPSIPAKNAFSKMMEASALADFREEMYLWAHDDGTLSWGWGHVGDPRPVPPKASAEATPLRRWSCRVATKGPDGCKAGTCELWTNLPSATAMR-------GQGETIAADGVIANGKLAVAGGDGNAGVQVARPGQSLSRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRDTIDSCLLLDAI--------------TGRSIN--------------------LGEDDSPVPHPRDLIPPNKSRNPPEPNQPNKSSAKENPKNVYVPLIGGRVRDNDIRAGDFPRRRCSNTEAAIDSVDVGDVARSLIACCRRALLLRMSYGGMACDQALLKGSCLAWGERCRH-------------------------------------------------RTVEHAGS-----KKIIPKYQRSSAPPAPP-----------PRHAAGGARPG----NVTPPFGYIHNSVLLALEQDPWMDFILSAHDGGGMPSALRSTLLAHVATVSESKPKQSTWGKAMPRDSKPSMRDRTRTNRQKRGTREGGSSPVAGGTGAERLATAAATRGG--GPILREADAALSGVDFHCSKVLDDVLRSAATAKRVGSVIQAAASERGPLQDTHFTAVGPSPSLEPTREAIMHAINRAMWACSSGVNRRELRLAFR-TATDEGR------GSWGDPAQSD--------LVAVFSPWSS------GDGASDIDVRVWDVISTDVLRWARNFVRGRLAPG 2616
+P GSRFV+CPLC K HS LAQ+HV+ C G P+ + ++ P+ ++ + SP EAG ++ +A + V + ++ + G GS+ G+S R+ G S NSN D D T G + T S S+ GD ++ +AF+ +M ASAL +FREEMYL AH DGTLSWGWG G+P +PP + T RW C+VATKGPDG KAGTC++WTNL A ++ G+G GV AGGD NAG++ ARP QSLSRLPV V+KSMLQKNIRRG AEAA RCALELA+KSWSDAIRR+LVI VEDSLLHPAAPLL+WLMVATSKGYRPP RL++AFL VV+ETA CPVRD+ DS G SI+ D+ PVPHP+ L+ P G V +A RRALL+R+SYGGMA DQALLKG CLAWGERC H T+ GS K + P+ Q PP+PP PR G ++ PFGY H SV ALE + W F+++AH G GMP ALR+ LLAHV V G+A +RT RQK A + +T GPI+READA LSGVDFHCS VLD++LRS A A RVG I RGP + VG + S E + A +AMWACSSG+N R LR+AF A +EG G+ G S +V V S G +S +D RVW +S+DV W FV+GRL+ G
Sbjct: 48 SPSGSRFVKCPLCGKSVHSSLAQTHVERC-------PGSGEEPISSAAKKVPPAAASAPAHTPGVSSPQQEAGGKADACVATSLVRRERSLAERVSSIPVVEAAAGPDDAKCGSI--GDSGREKAGAAGTPPPS----NSNGD--DFTGDGRRSRGRRKTTSCSSGEAGDSATDQ--EDDAFATLMAASALTNFREEMYLLAHQDGTLSWGWGPAGNP--LPPIPAHFDTASSRWRCQVATKGPDGRKAGTCDIWTNLAPAESVTDPVLPAAGRGGDRVTRGVTP------AGGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVITVEDSLLHPAAPLLTWLMVATSKGYRPPPRLLEAFLCVVHETAACPVRDSTDSSCRXXXXXXXXTCVSNGHHREAGFSISSAARTDQDPERQQLPVEKKCFDADEFPVPHPKSLLVPASQ--------------------------GAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVANIRRALLMRVSYGGMAFDQALLKGVCLAWGERCGHCYYCCCRGAVHPSFTLTVAAAATAASVDGSTGGSNPSCLEGEKASTSGEGTIFAKGSGSTDNKPVTPQRQ----PPSPPHVDHKTFSFARPRDQDAGKANREDLVDILQPFGYAHESVRSALEGNGWTAFLVAAHAGTGMPPALRTHLLAHVVGVGS--------GRAG---------ERTGNMRQKSXXXXXXXXXXXXXXXXRLTAASTSTHPICLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAIS---ESRGPRSN----GVGDAESSELDLVGVRQAAKQAMWACSSGINTRRLRVAFLWEAGEEGEETEVAEGNCGCCLSSPGYLEETEGIVGVGEDGVSLPVGIAGGSSSGMDARVWAAMSSDVSGWTTKFVQGRLSRG 939
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: D7G4U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI) HSP 1 Score: 280 bits (715), Expect = 2.130e-81 Identity = 225/581 (38.73%), Postives = 274/581 (47.16%), Query Frame = 1
Query: 958 GGDGNAGVQVARPGQSLSRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRDTIDSCLLLD---AITGRSINLGEDDSPVPHPRDLIPPNKSRNPPEPNQPNKSSAKENPKNVYVPLIGGRVRDNDIRAGDFPRRRCSNTEAAIDSVDVGDVARSLIACCRRALLLRMSYGGMACDQALLKGSCLAWGERCRHRTVEHAGSKKIIPKYQRSSAPPAPPPRHAAGGARPGNVTPPFGYIHNSVLLALEQDPWMDFILSAHDGGGMPSALRSTLLAHVATVSESKPKQSTWGKAMPRDSKPSMRDRTRTNRQKRGTREGGSSPVAGGTGAERLATAAATRGG----GPILREADAALSGVDFHCSKVLDDVLRSAATAKRVGSVIQAAASERGPLQDTHFTAVGPSPSLEPTREAIMHAINRAMWACSSGVNRRELRLAF---------RTATDEGRG-----SWGDPAQSDLVA------VFSPWSSGDGASD-IDVRVWDVISTDVLRWARNFVRGRLAPG 2616
GGD NAG++ ARP QSLSRLPV V+KSMLQKNIRRG AEAA RCALELA+KSWSDAIRR+LVI+VEDSLLHPAAPLL+WLMVATSKGYRPP RL++AFL VV+ETA CPV +S L + +G L + D P R PP P P+ + R RD D AG +N E +D + PFGY H SVL ALE + W F+++AH G GMP ALR+ +LAHV V G+A R + +++ ++TAA+T GPI+READA LSGVDFHCS VLD++LRS A A RVG I RGP + VG S S E + A +AMWACSSG+N R LR+AF T EG G S G +++ V V P +G G+S ID RVW +S+DV W FVRGRL+ G
Sbjct: 26 GGDDNAGLKAARPAQSLSRLPVAVVKSMLQKNIRRGRAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPLRLLEAFLCVVHETAACPVTGGSNSSFLEGEKASTSGEGTVLAKGSGST----DKTPVTSQRQPPSP-----------PRFDHKTFPLARPRDQD--AG------YANREDLVD-------------------------------------------------------------------------------------ILQPFGYAHESVLSALEGNGWTAFLVAAHAGTGMPPALRTHVLAHVVGVGS--------GRAGERAG----------DMKQKSXXXXXXXXXXXXXXXXXMSTAASTATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAIS---ESRGPRSND----VGDSASSELELVGVRQAAKQAMWACSSGINTRRLRVAFLREAGEESEETEVAEGNGGCCLSSPGYLEETERVVGVGEDGVSLPVGNGGGSSSGIDARVWAAMSSDVSGWTTKFVRGRLSRG 473
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A7S0CK82_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK82_9STRA) HSP 1 Score: 102 bits (253), Expect = 4.880e-19 Identity = 79/253 (31.23%), Postives = 118/253 (46.64%), Query Frame = 1
Query: 1009 SRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRDTIDSCLLLDAITGRSINLGEDDSPVPHPRDLIPPNKSRNPPEPNQPNKSSAKENPKNVYVPLIGGRVRDNDIRAGDFPRRRCSNTEAAIDSVDVGDVARSLIACCRRALLLRMSYGGMACDQALLKGSCLAWGERCRHRTVEHAGSKKIIPKYQRSSA 1767
SRL +PVLKS+LQK+IRR + R A+EL KS+ D IRRL +I++EDS+LHP P L W MV+ SKG+ P +V+ L +VY+ A+CP D I + +D+ ++IPP G ++ D++I F D +G +A R++LLR YGGMA D +LL W +R R V +K++ + + S++
Sbjct: 67 SRLSIPVLKSILQKSIRRRRPMPSVRIAMELIDKSYGDFIRRLPIIILEDSILHPQFPFLVWNMVSYSKGFVPAPNIVECILRIVYDVASCPWHDKI---------------MDNEDN------EIIPP-----------------------------GPKIFDSNIITEPF--------YILADLSYIGVMAPPECQLMIRSILLRGLYGGMASDISLLTSYAELWRKRFRQSRVPDTITKRVSDRLKSSNS 261
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A6U3V913_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3V913_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.680e-18 Identity = 79/235 (33.62%), Postives = 102/235 (43.40%), Query Frame = 1
Query: 1000 QSLSRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRDTIDSCLLLDAITGRSINLGEDDSPVPHPRDLIPPNKSRNPPEPNQPNKSSAKENPKNVYVPLIGGRVRDNDIRAGDFPRRRCSNTEAAIDSVDVGDVARSLIACCRRALLLRMSYGGMACDQALLKGSCLAWGERCR 1704
Q SRL + LKS LQK+IRR A R A+ELA KSW+D IRRL +I++EDS LHP LL+WLM+A SKGY P L+ L +V+E A+CP +D I+ DD +D I G +D + F S+T +L RA+LLR YGGM CD +L W +R R
Sbjct: 269 QRHSRLSISHLKSCLQKSIRRRAPLPAVRVAMELADKSWTDLIRRLPIIILEDSTLHPDFSLLAWLMIADSKGYVPSKELIVRVLQIVFEMASCPWQDGIEEH-------------SNDDCSGSQMKDRI--------------------------------GSGSGDDSKPTSFSLSSSSSTLFPTQQQKEQSTVNALEITTIRAMLLRAQYGGMKCDVDMLHSFSKIWLQRFR 458
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A7S3VG54_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VG54_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.380e-17 Identity = 112/392 (28.57%), Postives = 168/392 (42.86%), Query Frame = 1
Query: 148 FVECPLCSKYFHSCLAQSHVDECLSVYAEARGRPSSPLKTTQTQLVPSPRNSEDSSIRSPNGEAGRASEGYIAPLVSSALHCEEYEVMPLRLLRISGGGSMWAGESARKVR-RGKGNSNNSGSMINSNNDSIDITSSGNENNTPVATASQSTATGDISSPSIPAKNAFSKMMEASALA---DFREEMYLWAHDDGTLSWGWGHVGDPRPVPPKASAEATPLRRWSCRVATKGPDGCKAGT---CELWTNLPSATAMRGQGETIAADGVIANGKLAVAGGDGNAGVQVARPGQSLSRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRDTID 1302
FVECP C + F S H+D+C+ E +P SPL ++ T L+ S S S+ +SP ++ IA +S+ H E+ E E+ + R + NS +M NS + + + +++ +SQS SSP+ +NAF MM+ S +A + W H W DP + + ++ WS V K GT + +++PSA V+ Q S+ VPVLKS+LQK +RR + R A+EL+ KS+ D IRRL +I +EDS LH P WLMVA SK + PP L+ + V+E A+CP RD ++
Sbjct: 29 FVECPSCKRSFASTSINIHLDKCIMDGFEHEAQPPSPLPSS-TALLES---SSSSAWKSPMKCTPKSDTAKIANSISNEEHLEKKE-----------------SENHQAANDRPTIDHMNSEAMKNSTSSLKESGVNSDKSKKEKIISSQSEKKLGTSSPN---QNAFQHMMQHSKIAFTQQSKRNRREWFHLSAAGEISWMRSDDP-------TIQGLDVK-WSGSVMINSLKTEKDGTNVELNITSSIPSA-------------------------------VEYQALVQRTSKFSVPVLKSVLQKGVRRRRPLPSVRSAMELSDKSFGDLIRRLPIICLEDSFLHHDFPFFIWLMVAYSKDFVPPQELIVRIMRAVFEIASCPWRDELN 357
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A835ZBZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ5_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.420e-17 Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 1054 IRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATC 1281
+RRG E A RCA ELA+KS++D +RRL +I +EDS+LHPA PLL+WLM A KGY PP V A L+VV+E + C
Sbjct: 1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 76
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A448ZPZ8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPZ8_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.160e-16 Identity = 83/246 (33.74%), Postives = 113/246 (45.93%), Query Frame = 1
Query: 1009 SRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRDTIDSCLLLDAITGRSINLGEDDSPVPHPRDLIPPNKSRNPPEPNQPNKSSAKENPKNVYVPLIGGRVRDNDIRAGDFPRRRC-SNTEAAIDSVDVGDVARSLIACCRRALLLRMSYGGMACDQALLKGSCLAWGERCRHRTVEHAGSKKII 1743
SRL VPVLKS+LQK+IRR + R A ELA KS D +RRL +I++EDS LHP+ P L WLM+A SK Y P L+ L +V+E A+C +D+ L + IN D+S P +L + N K V + D++ + C SN E + S+ L+R YGGMACD +LKG W +R +KKI+
Sbjct: 101 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMADSKNYHLPLFLLKRVLGIVFEMASCRWQDS------LKVHEQQKIN-HNDESTTDIPSELT----------------LACLHNYKTV------SKFSDDNALSTQSGTEFCLSNDELIVWSI-----------------LMRGQYGGMACDIKMLKGYAALWHQRFFSIQTIPEKTKKIL 300
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A7S1BMU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 4.100e-16 Identity = 55/90 (61.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 946 LAVAGGDGNAGVQVARPGQSLSRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSK 1215
L+VAG D A R S SRL VPVLKSMLQK +RR A A R A+ELA KSW D IRRL VI+VEDS+LHP PL+ WLM+A SK
Sbjct: 12 LSVAGLDATAAT-ARRLIVSPSRLSVPVLKSMLQKCVRRRRALPAVRIAMELAQKSWRDFIRRLPVIMVEDSMLHPDLPLVVWLMMAESK 100
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: B8C1K7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1K7_THAPS) HSP 1 Score: 92.8 bits (229), Expect = 9.070e-16 Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 1009 SRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRD 1293
SRL V LKS LQK+IRR A R ALEL KSW IRRL +I +EDS LHP LL WLMVA SK Y PP+ L+ + +V+E A+CP +D
Sbjct: 326 SRLSVAQLKSCLQKSIRRRAPLPAVRVALELVDKSWEALIRRLPIICLEDSFLHPDFALLVWLMVADSKNYAPPTSLIVRVMQIVFEMASCPRQD 420
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Match: A0A7S4AVJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVJ5_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.730e-15 Identity = 75/247 (30.36%), Postives = 112/247 (45.34%), Query Frame = 1
Query: 1009 SRLPVPVLKSMLQKNIRRGNAEAASRCALELAVKSWSDAIRRLLVIVVEDSLLHPAAPLLSWLMVATSKGYRPPSRLVDAFLSVVYETATCPVRDTIDSCLLLDAITGRSINLGEDDSPVPHPRDLIPPNKSRNPPEPNQPNKSSAKENPKNVYVPLIGGRVRDNDIRAGDFPRRRCSNTEAAIDSVDVGDVARSLIACCRRALLLRMSYGGMACDQALLKGSCLAWGER-CRHRTVEHAGSKKIIP 1746
SRL VPVLKS+LQK+IRR + R A ELA KS D +RRL +I++EDS LHP+ P L WLM+A SK ++ P L+ L +V+E A+C +D+ L + N+ + DS + P L L ++R ++ ++ + D + V + L+R YGGMACD +L+ W +R C R++ K + P
Sbjct: 315 SRLSVPVLKSILQKSIRRRKPLPSVRVASELADKSLGDLLRRLPIIILEDSTLHPSFPFLVWLMMAISKDFQLPLSLLKRVLGIVFEMASCRWQDS------LRPHKQQRTNV-DSDSSINMPGQL--------------------------TLASLHNSKIRSKTSHDNGLSKQMGTSIALSNDELIVWSI------------LMRGKYGGMACDIQMLQCYAELWQQRFCSIRSLSDEAKKLLSP 516 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7661.15331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7661.15331.1 >prot_H-elongata_contig7661.15331.1 ID=prot_H-elongata_contig7661.15331.1|Name=mRNA_H-elongata_contig7661.15331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=878bp MQRKGFARLFASPLRGDEKHPPRPRPRPDLKRPRSATTPTPTTTPQGSRFback to top mRNA from alignment at H-elongata_contig7661:2926..7837+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7661.15331.1 ID=mRNA_H-elongata_contig7661.15331.1|Name=mRNA_H-elongata_contig7661.15331.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4912bp|location=Sequence derived from alignment at H-elongata_contig7661:2926..7837+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7661:2926..7837+ >mRNA_H-elongata_contig7661.15331.1 ID=mRNA_H-elongata_contig7661.15331.1|Name=mRNA_H-elongata_contig7661.15331.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5268bp|location=Sequence derived from alignment at H-elongata_contig7661:2926..7837+ (Himanthalia elongata Himel1 dioecious)back to top |