prot_H-elongata_contig76575.15328.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76575.15328.1
Unique Nameprot_H-elongata_contig76575.15328.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: D8LIG7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.770e-22
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    2 TSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            T   L  + RHLSALGRFGETAFI+PLYG+GEL QSFCRMAAV+GA+ +LRRQL+GA+VDR +GR
Sbjct:  463 TEEGLEAVYRHLSALGRFGETAFIAPLYGVGELSQSFCRMAAVHGAICMLRRQLRGAVVDRNSGR 527          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A443R773_9ACAR (Rab proteins geranylgeranyltransferase component A n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443R773_9ACAR)

HSP 1 Score: 79.7 bits (195), Expect = 7.380e-16
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    2 TSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVD 61
            T + ++ +NR LS+LGRFG T FI PLYG GE+PQ+FCR+ AV+G  Y L+R L G IVD
Sbjct:  258 TENAMVGVNRFLSSLGRFGNTPFILPLYGSGEIPQAFCRLCAVFGGTYCLKRSLNGIIVD 317          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI001E1B562B (rab proteins geranylgeranyltransferase component A 2 n=1 Tax=Jaculus jaculus TaxID=51337 RepID=UPI001E1B562B)

HSP 1 Score: 75.5 bits (184), Expect = 2.310e-14
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0
Query:   13 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            L  LGRFG T F+ PLYG GE+PQ FCRM+AV+G +Y LR +++G +VD+ +GR
Sbjct:  354 LRCLGRFGNTPFLFPLYGQGEIPQCFCRMSAVFGGIYCLRHKIQGLVVDKDSGR 407          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI0003342E7E (rab proteins geranylgeranyltransferase component A 2 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI0003342E7E)

HSP 1 Score: 75.5 bits (184), Expect = 2.310e-14
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0
Query:   13 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            L  LGRFG T F+ PLYG GE+PQ FCRM+AV+G +Y LRRQ++  +VD+  GR
Sbjct:  367 LQCLGRFGNTPFLFPLYGQGEMPQCFCRMSAVFGGIYCLRRQVQCLVVDKQAGR 420          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A6J0CTU4_PERMB (Rab proteins geranylgeranyltransferase component A n=6 Tax=Muroidea TaxID=337687 RepID=A0A6J0CTU4_PERMB)

HSP 1 Score: 74.3 bits (181), Expect = 5.890e-14
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   13 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            L  LGRFG T FI PLYG GE+PQ FCRM AV+G +Y LR Q++  IVD+ +GR
Sbjct:  357 LQCLGRFGNTPFIFPLYGQGEIPQCFCRMCAVFGGIYCLRHQVQCLIVDKDSGR 410          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI001402C2D2 (rab proteins geranylgeranyltransferase component A 2-like isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402C2D2)

HSP 1 Score: 74.3 bits (181), Expect = 5.910e-14
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0
Query:    1 NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            +T   L    R L++LGR+G T F+ PLYG GE+PQ FCRM+AV+   Y LR  LK  +VD  TGR
Sbjct:  330 STEEGLAATRRFLASLGRYGNTPFLFPLYGSGEVPQCFCRMSAVFAGTYCLRHSLKHLVVDSSTGR 395          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A8J6DP35_GALPY (Rab proteins geranylgeranyltransferase component A n=2 Tax=Talpidae TaxID=9373 RepID=A0A8J6DP35_GALPY)

HSP 1 Score: 73.9 bits (180), Expect = 8.060e-14
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 0
Query:   13 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            L  LGRFG T F+ PLYG GE+PQ FCRM AV+G +Y LRR+++  +VD+ +GR
Sbjct:  371 LQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRRKVQCLVVDKESGR 424          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: UPI001879B1BA (rab proteins geranylgeranyltransferase component A 2 n=3 Tax=Phyllostomidae TaxID=9415 RepID=UPI001879B1BA)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   13 LSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            L  LGRFG T F+ PLYG GE+PQ FCRM AV+G +Y LR Q++  +VD+ +GR
Sbjct:  363 LQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHQVQCLVVDKESGR 416          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A669PHX1_PHACC (Rab proteins geranylgeranyltransferase component A n=16 Tax=Galliformes TaxID=8976 RepID=A0A669PHX1_PHACC)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 0
Query:    1 NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            NT   L    + L  LGR+G T F+ PLYG GE+PQ FCRM AV+G +Y LR  ++  +VD+ +GR
Sbjct:  347 NTLEGLQATRKFLQCLGRYGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHSVQCLVVDKESGR 412          
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Match: A0A1D5PAT3_CHICK (Rab proteins geranylgeranyltransferase component A n=18 Tax=Galliformes TaxID=8976 RepID=A0A1D5PAT3_CHICK)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 0
Query:    1 NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYVLRRQLKGAIVDRVTGR 66
            NT   L    + L  LGR+G T F+ PLYG GE+PQ FCRM AV+G +Y LR  ++  +VD+ +GR
Sbjct:  346 NTLEGLQATRKFLQCLGRYGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHSVQCLVVDKESGR 411          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76575.15328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIG7_ECTSI1.770e-2272.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A443R773_9ACAR7.380e-1658.33Rab proteins geranylgeranyltransferase component A... [more]
UPI001E1B562B2.310e-1457.41rab proteins geranylgeranyltransferase component A... [more]
UPI0003342E7E2.310e-1459.26rab proteins geranylgeranyltransferase component A... [more]
A0A6J0CTU4_PERMB5.890e-1461.11Rab proteins geranylgeranyltransferase component A... [more]
UPI001402C2D25.910e-1451.52rab proteins geranylgeranyltransferase component A... [more]
A0A8J6DP35_GALPY8.060e-1457.41Rab proteins geranylgeranyltransferase component A... [more]
UPI001879B1BA1.100e-1357.41rab proteins geranylgeranyltransferase component A... [more]
A0A669PHX1_PHACC1.100e-1348.48Rab proteins geranylgeranyltransferase component A... [more]
A0A1D5PAT3_CHICK1.100e-1348.48Rab proteins geranylgeranyltransferase component A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018203GDP dissociation inhibitorPRINTSPR00891RABGDIREPcoord: 30..51
score: 60.71
coord: 12..29
score: 33.13
IPR018203GDP dissociation inhibitorPFAMPF00996GDIcoord: 10..60
e-value: 2.9E-12
score: 45.8
IPR018203GDP dissociation inhibitorPANTHERPTHR11787RAB GDP-DISSOCIATION INHIBITORcoord: 8..62
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 1..66
e-value: 3.5E-19
score: 71.1
IPR036188FAD/NAD(P)-binding domain superfamilySUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 9..62
NoneNo IPR availablePANTHERPTHR11787:SF4RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 2coord: 8..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76575contigH-elongata_contig76575:2478..2678 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76575.15328.1mRNA_H-elongata_contig76575.15328.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76575 2478..2678 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76575.15328.1 ID=prot_H-elongata_contig76575.15328.1|Name=mRNA_H-elongata_contig76575.15328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
NTSHELLLINRHLSALGRFGETAFISPLYGMGELPQSFCRMAAVYGAVYV
LRRQLKGAIVDRVTGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018203GDP_dissociation_inhibitor
IPR036188FAD/NAD-bd_sf