mRNA_H-elongata_contig76544.15326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76544.15326.1
Unique NamemRNA_H-elongata_contig76544.15326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: D8LMN1_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMN1_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 8.410e-50
Identity = 77/102 (75.49%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 SLKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADTFKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYLRR 306
            S+KGTPLFMAPEMLLK+KCG+RVDVWSLGCAV+EM+TTRPPWADTFKHPVEII+HFS+NPGPPPLP++L+P L+ FLL+CFTW A  RP++ +L  H+YL R
Sbjct:  463 SMKGTPLFMAPEMLLKRKCGKRVDVWSLGCAVLEMVTTRPPWADTFKHPVEIIEHFSENPGPPPLPEDLSPALREFLLSCFTWEAGRRPTSHQLVAHEYLLR 564
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BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A7S0K637_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K637_CAFRO)

HSP 1 Score: 102 bits (254), Expect = 3.460e-23
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    4 LKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADT-FKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            ++GTPLFMAPE++ +   GR+ DVWS GC V+EM T + PWA   F + V  + H +  P PPP+PD+L+P  + F+L C T +   RP+AQEL  H +L
Sbjct:  874 IRGTPLFMAPEVIQQVGHGRKADVWSAGCTVLEMATAKAPWAQLGFDNEVAAMFHIATTPHPPPMPDSLSPQAKDFVLRCLTRDPSRRPTAQELLAHPFL 973
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BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A5A8D1I9_CAFRO (Protein kinase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D1I9_CAFRO)

HSP 1 Score: 102 bits (254), Expect = 3.470e-23
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    4 LKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADT-FKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            ++GTPLFMAPE++ +   GR+ DVWS GC V+EM T + PWA   F + V  + H +  P PPP+PD+L+P  + F+L C T +   RP+AQEL  H +L
Sbjct:  803 IRGTPLFMAPEVIQQVGHGRKADVWSAGCTVLEMATAKAPWAQLGFDNEVAAMFHIATTPHPPPMPDSLSPQAKDFVLRCLTRDPSRRPTAQELLAHPFL 902
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BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A5A8CGG5_CAFRO (Protein kinase domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CGG5_CAFRO)

HSP 1 Score: 102 bits (254), Expect = 3.500e-23
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    4 LKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADT-FKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            ++GTPLFMAPE++ +   GR+ DVWS GC V+EM T + PWA   F + V  + H +  P PPP+PD+L+P  + F+L C T +   RP+AQEL  H +L
Sbjct:  803 IRGTPLFMAPEVIQQVGHGRKADVWSAGCTVLEMATAKAPWAQLGFDNEVAAMFHIATTPHPPPMPDSLSPQAKDFVLRCLTRDPSRRPTAQELLAHPFL 902
[Close]
BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A7S1X2H0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X2H0_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 2.320e-22
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 SLKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADTFKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            S+KGTP +MAPE++ +   GR+ D+WS+GC VIEM T +PPW+  F  P+  + H + +  PPPLP+ L+P  + FL+ CF    + RP+A  L  H +L
Sbjct:   90 SIKGTPYWMAPEVITQTGHGRQADIWSVGCTVIEMATGKPPWSQHFPVPMSAMFHIASSKHPPPLPERLSPEARDFLMLCFNRVPKERPNATRLLQHPFL 189
[Close]
BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A1Y1IDJ1_KLENI (MEKK and related serine/threonine protein kinases n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDJ1_KLENI)

HSP 1 Score: 99.0 bits (245), Expect = 5.680e-22
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 SLKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADTFKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            S+KGTP +MAPE++ +   GR+ D+WS+GC VIEM T +PPW+  F   V  + H + + GPPP+P+NL+   + FLL CF  + + RPSA EL  H ++
Sbjct:  320 SMKGTPYWMAPEVIKQTGHGRQADIWSVGCTVIEMATGKPPWSQ-FSSGVSALFHIASSKGPPPIPENLSADGRDFLLKCFRRDPKERPSATELLRHPFI 418
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BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A7S0SAF5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SAF5_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.130e-21
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 SLKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADTFKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            S+KGTP +MAPE++ +   GR+ D+WS+GC ++EM T +PPW++ F   V  + H + + GPPP+PD L+P    FLL CF    + RP+A  L  H ++
Sbjct:  143 SIKGTPYWMAPEVIKQTGHGRQADIWSVGCTILEMATGKPPWSE-FGSQVSALFHIASSKGPPPMPDFLSPEAHDFLLLCFNRVPKDRPNATRLLQHPFV 241
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BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A061RJH3_9CHLO (Mitogen-activated protein kinase kinase kinase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RJH3_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 1.800e-21
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 SLKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADTFKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            S+KGTP +MAPE++     GR+ D+WS+GC VIEM T +PPW++ FK P+  +   + +  PPP+P++L+P  + FLL CF    + RP+A  L  H +L
Sbjct:  301 SIKGTPYWMAPEVIKATGHGRQADIWSVGCTVIEMATGKPPWSE-FKEPMSAMYQIASSKEPPPIPEHLSPEARDFLLLCFNRVPKERPNASRLLQHPFL 399
[Close]
BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A7S1XYM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYM9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.300e-21
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 SLKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADT-FKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            S+KGTP FMAPE+L +   GRR DVWS+G  VI+MIT   PW+    K+ + +     ++ GPPP+P+ L+P+L++FLL CF  + + RP A EL  H++L
Sbjct:  346 SMKGTPFFMAPEVLSRSHYGRRADVWSVGGLVIQMITGFAPWSQLKIKNILALHYRVVNSEGPPPMPEGLSPLLKNFLLQCFVRDPKKRPHAAELSRHRWL 446
[Close]
BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Match: A0A388JNT3_CHABU (Protein kinase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JNT3_CHABU)

HSP 1 Score: 95.9 bits (237), Expect = 6.860e-21
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 SLKGTPLFMAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADTFKHPVEIIQHFSDNPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYL 300
            S+KGTP +MAPE++ +   GR+ D+WS+GC VIEM T +PPW+  F+H V  +   + +  PPP+P++L+   + FLL+CF  + + RPSA EL  H ++
Sbjct:  638 SMKGTPYWMAPEVIKQTGHGRQADIWSVGCTVIEMSTGKPPWSQ-FQHQVSALFAIASSTAPPPIPEHLSNEAKDFLLSCFKRDPKERPSAGELLKHPFV 736
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76544.15326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN1_ECTSI8.410e-5075.49Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S0K637_CAFRO3.460e-2347.00Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8D1I9_CAFRO3.470e-2347.00Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A5A8CGG5_CAFRO3.500e-2347.00Protein kinase domain-containing protein n=3 Tax=C... [more]
A0A7S1X2H0_9CHLO2.320e-2244.00Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A1Y1IDJ1_KLENI5.680e-2246.00MEKK and related serine/threonine protein kinases ... [more]
A0A7S0SAF5_9CHLO1.130e-2143.00Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A061RJH3_9CHLO1.800e-2144.00Mitogen-activated protein kinase kinase kinase n=1... [more]
A0A7S1XYM9_9STRA5.300e-2146.53Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A388JNT3_CHABU6.860e-2144.00Protein kinase domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76544contigH-elongata_contig76544:3..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D8LMN1
KEGG koko:K11229
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
EC2.7.11.25
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size285
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.824959-UTR-H-elongata_contig76544:2..261622931169.824959-UTR-H-elongata_contig76544:2..26Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76544 3..26 +
1691679726.9459445-UTR-H-elongata_contig76544:2..261691679726.9459445-UTR-H-elongata_contig76544:2..26Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76544 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.843637-CDS-H-elongata_contig76544:26..3111622931169.843637-CDS-H-elongata_contig76544:26..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76544 27..311 +
1691679726.9644608-CDS-H-elongata_contig76544:26..3111691679726.9644608-CDS-H-elongata_contig76544:26..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76544 27..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76544.15326.1prot_H-elongata_contig76544.15326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76544 27..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76544.15326.1

>prot_H-elongata_contig76544.15326.1 ID=prot_H-elongata_contig76544.15326.1|Name=mRNA_H-elongata_contig76544.15326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MAPEMLLKQKCGRRVDVWSLGCAVIEMITTRPPWADTFKHPVEIIQHFSD
NPGPPPLPDNLAPVLQSFLLACFTWNAELRPSAQELCGHQYLRRQ
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mRNA from alignment at H-elongata_contig76544:3..311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76544.15326.1 ID=mRNA_H-elongata_contig76544.15326.1|Name=mRNA_H-elongata_contig76544.15326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig76544:3..311+ (Himanthalia elongata Himel1 dioecious)
TCCCTGAAGGGAACGCCTCTTTTCATGGCCCCGGAGATGCTTCTCAAGCA
GAAGTGCGGCCGGCGGGTAGACGTGTGGTCTCTCGGTTGCGCCGTGATCG
AGATGATTACAACCCGCCCGCCCTGGGCCGATACATTCAAGCACCCGGTT
GAGATCATCCAACACTTCAGCGACAACCCGGGGCCACCGCCGTTGCCAGA
TAATCTGGCGCCAGTGCTGCAAAGTTTCCTTCTCGCGTGTTTTACCTGGA
ATGCGGAGTTGCGTCCCTCAGCGCAGGAGCTCTGCGGACACCAGTACCTC
CGGAGACAA
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Coding sequence (CDS) from alignment at H-elongata_contig76544:3..311+

>mRNA_H-elongata_contig76544.15326.1 ID=mRNA_H-elongata_contig76544.15326.1|Name=mRNA_H-elongata_contig76544.15326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig76544:3..311+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCCGGAGATGCTTCTCAAGCAGAAGTGCGGCCGGCGGGTAGACGT
GTGGTCTCTCGGTTGCGCCGTGATCGAGATGATTACAACCCGCCCGCCCT
GGGCCGATACATTCAAGCACCCGGTTGAGATCATCCAACACTTCAGCGAC
AACCCGGGGCCACCGCCGTTGCCAGATAATCTGGCGCCAGTGCTGCAAAG
TTTCCTTCTCGCGTGTTTTACCTGGAATGCGGAGTTGCGTCCCTCAGCGC
AGGAGCTCTGCGGACACCAGTACCTCCGGAGACAAATGGCCCCGGAGATG
CTTCTCAAGCAGAAGTGCGGCCGGCGGGTAGACGTGTGGTCTCTCGGTTG
CGCCGTGATCGAGATGATTACAACCCGCCCGCCCTGGGCCGATACATTCA
AGCACCCGGTTGAGATCATCCAACACTTCAGCGACAACCCGGGGCCACCG
CCGTTGCCAGATAATCTGGCGCCAGTGCTGCAAAGTTTCCTTCTCGCGTG
TTTTACCTGGAATGCGGAGTTGCGTCCCTCAGCGCAGGAGCTCTGCGGAC
ACCAGTACCTCCGGAGACAA
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