mRNA_H-elongata_contig76516.15325.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76516.15325.1
Unique NamemRNA_H-elongata_contig76516.15325.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: D7G110_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 7.520e-27
Identity = 61/80 (76.25%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRK 240
            LP +  A  QSLNHVRQMATF  A+ + GGRSE IES++ETRLTG  VHALVL SLALLPQL KIPMAVVSGIFLYLGRK
Sbjct:  540 LPWQCAATVQSLNHVRQMATFEPATSAAGGRSETIESMHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLYLGRK 619          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A6H5KFP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.980e-26
Identity = 61/81 (75.31%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP +  A  QSLNHVRQMATF  A  + GGRSE IES++ETRLTG  VHALVL SLALLPQL KIPMAVVSGIFL LGRKV
Sbjct:  232 LPWQCAATVQSLNHVRQMATFEPAMSAAGGRSETIESIHETRLTGFCVHALVLGSLALLPQLGKIPMAVVSGIFLDLGRKV 312          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A835ZK65_9STRA (HCO3 transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.940e-19
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP +  A  QSLNHVR M+T       DG + E I+ V ETR+TG S+HAL+LAS+ +LP L +IPM VVSGIFLYLGRKV
Sbjct:  241 LPWQCAATVQSLNHVRAMSTAEIIDSPDGSKEEVIKDVVETRVTGFSIHALILASVGMLPVLKRIPMPVVSGIFLYLGRKV 321          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A0M0JHU2_9EUKA (HCO3_cotransp domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHU2_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 3.160e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP   +A  QSLNHVR M  +R   P DG   E  + V ETR+TG  VHA VL S   +P LS +P+ VV+G+FLYLGRKV
Sbjct:  104 LPWMCSATVQSLNHVRAMTVYRKIKPKDGPELEVPDYVVETRVTGFGVHAAVLCSALAIPTLSLVPLPVVAGVFLYLGRKV 184          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A7S3B5Q5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B5Q5_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 8.350e-16
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP   +A  QSLNH+R M+ +  ++  DG   E  E V ETR+TG  VHA +LAS   +P L  +P+AVVSG+FLYLG+KV
Sbjct:   76 LPWMCSATVQSLNHIRAMSIYTKSTSPDGAVLELPEKVIETRVTGFGVHAAILASALFIPVLKSVPLAVVSGVFLYLGKKV 156          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.420e-15
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP +  A  QSLNHVR ++T +     DG + E +  V ETR+TG + HAL+L S+  LP L  IPM VVSG+FLYLGRKV
Sbjct:  342 LPWQCAATVQSLNHVRALSTTQVVDGPDGEKQEVVTEVCETRVTGFATHALILMSVGALPLLRLIPMPVVSGMFLYLGRKV 422          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A7S1XDV7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDV7_9RHOD)

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-15
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP    A  QSLNHVR ++T R+ + +DG + E+I +V ETRLTG  +H  +  SL LLP +  IPMAV+SG+FLYLGR +
Sbjct:    7 LPWMCAATVQSLNHVRALSTTRSVTGNDGTKKEQI-TVVETRLTGFLIHLSIGVSLLLLPVIKLIPMAVISGLFLYLGRNI 86          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A7S1TD95_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD95_9RHOD)

HSP 1 Score: 75.9 bits (185), Expect = 2.990e-14
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP    A  QSLNHVR ++T R+ + +DG + E+I +V ETRLTG  +H  +  SL LLP +  IPMAV+SG+FLYLGR +
Sbjct:  395 LPWMCAATVQSLNHVRALSTTRSVTGNDGTKKEQI-TVVETRLTGFLIHLSIGVSLLLLPVIKLIPMAVISGLFLYLGRNI 474          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A7S1FU71_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU71_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.940e-13
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRK 240
            LP    A  QSLNHVR ++ +    PS    +EE++SV ETR TG   HA V +S+ LLP LS+IP+ VVSG+FL+LGRK
Sbjct:  427 LPWMCGATVQSLNHVRALSKY---CPSAAPGTEELDSVIETRATGFFTHAAVASSIFLLPLLSRIPIPVVSGVFLFLGRK 503          
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Match: A0A7S4AXV5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4AXV5_CHRCT)

HSP 1 Score: 72.4 bits (176), Expect = 4.470e-13
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 LPSKPNALGQSLNHVRQMATFRAASPSDGGR--SEEIESVYETRLTGLSVHALVLASLALLPQLSKIPMAVVSGIFLYLGRKV 243
            LP   +A  +SLNH+R M+ F+  +  +  R  +E  E V E RLTG  VHAL+L S   +P L+ +P+ VVSG+FLYLGRKV
Sbjct:  221 LPWMCSATVESLNHIRAMSVFKKVAKGNAARQAAEVPERVIENRLTGFGVHALILLSSLFVPLLAVVPLPVVSGVFLYLGRKV 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76516.15325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G110_ECTSI7.520e-2776.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP7_9PHAE1.980e-2675.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK65_9STRA1.940e-1959.26HCO3 transporter family-domain-containing protein ... [more]
A0A0M0JHU2_9EUKA3.160e-1653.09HCO3_cotransp domain-containing protein n=1 Tax=Ch... [more]
A0A7S3B5Q5_9EUKA8.350e-1650.62Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A836CJA6_9STRA2.420e-1553.09Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XDV7_9RHOD3.400e-1551.85Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1TD95_9RHOD2.990e-1451.85Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1FU71_9STRA1.940e-1352.50Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4AXV5_CHRCT4.470e-1348.19Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76516contigH-elongata_contig76516:272..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue7.3e-23
Seed eggNOG ortholog2880.D7G110
EggNOG free text desc.inorganic anion exchanger activity
EggNOG OGsKOG1172@1,KOG1172@2759
Ec32 orthologEc-22_001570.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBicarbonate transporter, eukaryotic
Ec32 orthologEc-22_001570.2
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.775415-CDS-H-elongata_contig76516:271..5141622931169.775415-CDS-H-elongata_contig76516:271..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76516 272..514 +
1691679726.9243894-CDS-H-elongata_contig76516:271..5141691679726.9243894-CDS-H-elongata_contig76516:271..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76516 272..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76516.15325.1prot_H-elongata_contig76516.15325.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76516 272..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76516.15325.1

>prot_H-elongata_contig76516.15325.1 ID=prot_H-elongata_contig76516.15325.1|Name=mRNA_H-elongata_contig76516.15325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
LPSKPNALGQSLNHVRQMATFRAASPSDGGRSEEIESVYETRLTGLSVHA
LVLASLALLPQLSKIPMAVVSGIFLYLGRKV
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mRNA from alignment at H-elongata_contig76516:272..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76516.15325.1 ID=mRNA_H-elongata_contig76516.15325.1|Name=mRNA_H-elongata_contig76516.15325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig76516:272..514+ (Himanthalia elongata Himel1 dioecious)
CTCCCCTCGAAACCTAACGCGCTCGGGCAGAGCCTGAACCACGTCCGCCA GATGGCGACCTTTCGGGCTGCCTCTCCTTCAGACGGAGGGAGATCGGAGG AGATCGAGTCCGTCTACGAGACCCGGCTGACCGGGTTATCCGTGCACGCC CTGGTCCTCGCGAGCCTAGCCCTGCTGCCGCAGCTATCTAAGATCCCCAT GGCCGTTGTGTCCGGAATATTCTTGTATCTCGGTCGAAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig76516:272..514+

>mRNA_H-elongata_contig76516.15325.1 ID=mRNA_H-elongata_contig76516.15325.1|Name=mRNA_H-elongata_contig76516.15325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig76516:272..514+ (Himanthalia elongata Himel1 dioecious)
CTCCCCTCGAAACCTAACGCGCTCGGGCAGAGCCTGAACCACGTCCGCCA
GATGGCGACCTTTCGGGCTGCCTCTCCTTCAGACGGAGGGAGATCGGAGG
AGATCGAGTCCGTCTACGAGACCCGGCTGACCGGGTTATCCGTGCACGCC
CTGGTCCTCGCGAGCCTAGCCCTGCTGCCGCAGCTATCTAAGATCCCCAT
GGCCGTTGTGTCCGGAATATTCTTGTATCTCGGTCGAAAGGTGCTCCCCT
CGAAACCTAACGCGCTCGGGCAGAGCCTGAACCACGTCCGCCAGATGGCG
ACCTTTCGGGCTGCCTCTCCTTCAGACGGAGGGAGATCGGAGGAGATCGA
GTCCGTCTACGAGACCCGGCTGACCGGGTTATCCGTGCACGCCCTGGTCC
TCGCGAGCCTAGCCCTGCTGCCGCAGCTATCTAAGATCCCCATGGCCGTT
GTGTCCGGAATATTCTTGTATCTCGGTCGAAAGGTG
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