mRNA_H-elongata_contig76464.15318.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A085N151_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N151_9BILA) HSP 1 Score: 71.6 bits (174), Expect = 4.410e-11 Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query: 37 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
C C + ++ + P S ++R + + DL GP A+ GNR+ + IDD++R+ +VR LKHKS NA+++IV ++ G K V+RTD G E
Sbjct: 462 CECCIRGKLNQQPFPNS-KSRAAKPLELIHSDLCGPMQTATPSGNRYCLTVIDDYSRYAVVRLLKHKSQVPNAIQEIVREWTTQVGYKPKVLRTDNGKE 559
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A558HBQ0_9GAMM (DDE-type integrase/transposase/recombinase (Fragment) n=2 Tax=Cobetia crustatorum TaxID=553385 RepID=A0A558HBQ0_9GAMM) HSP 1 Score: 68.9 bits (167), Expect = 6.690e-11 Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 13 QLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
+L + ++C C + R + K N T R L +DL+GP S GG +++++ +DDFTRF V FLK KS+ + ++ I+ +G ++ IR+D G E
Sbjct: 80 KLQKVDKICGECQLGKQIRSSHKKVNSNTTSRPLELLHMDLIGPTRTESRGGKKYILVIVDDFTRFTWVSFLKDKSETLDEVKKIIKRIQNEKGSQVYKIRSDHGSE 186
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.180e-10 Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 3
Query: 348 TPPYTLQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAHVCDMWNRCTSSSLDSGTSPYELWYG 557
TP Y+LQYNGV ER LGL+ + +A L V K+D+LWAEAM C+ N + SPYE+WYG
Sbjct: 72 TPAYSLQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHIACFANPDSMSPYEMWYG 148
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY) HSP 1 Score: 70.1 bits (170), Expect = 1.580e-10 Identity = 39/109 (35.78%), Postives = 54/109 (49.54%), Query Frame = 1
Query: 7 GVQLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
G++ SG CV C K + R P+ +R L DL GP + S+GG R+V+ IDD+TR V FLK K++ L + G +I IR+D GGE
Sbjct: 114 GLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGE 222
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0V1LL02_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1LL02_9BILA) HSP 1 Score: 66.6 bits (161), Expect = 2.160e-10 Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 37 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
CV C K + R PKS R++ + D+ GP AS+GG R+ + IDDF+R V FLKHK++A +D + ++ +RTD G E
Sbjct: 43 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQAASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 141
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0A9XD75_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XD75_LYGHE) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-10 Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 82 KSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
K +++R L +DL GP AS+GG RF+ +DD +R+ V FLKHKSDA +D GLKI +IRTDGG E
Sbjct: 239 KPSKHRAKNILDLLHLDLCGPMETASIGGKRFMFTIVDDCSRYTHVFFLKHKSDAFAVFKDFQTLVERQMGLKIKMIRTDGGTE 322
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6P9DXA8_JUGRE (uncharacterized protein LOC118344254 n=3 Tax=Juglans TaxID=16718 RepID=A0A6P9DXA8_JUGRE) HSP 1 Score: 69.7 bits (169), Expect = 2.440e-10 Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 34 LCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
+C C + R A +T T+R L IDL+GP SLGG R++++ +DDFTR+ V FL+ K +A N +R + +G I IR+D G E
Sbjct: 870 VCGSCQLGKQVRTAHKNTTAILTERPLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVEFLREKGEAPNVIRTLCKKLQNEQGKAIVRIRSDHGRE 969
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: UPI001C718580 (uncharacterized protein LOC122278499 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C718580) HSP 1 Score: 68.2 bits (165), Expect = 7.620e-10 Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 34 LCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
+C C + R A K+T+ T + L IDL+GP SLGG R++++ +DDFTR+ V FL+ K++A N ++ + +G I IR+D G E
Sbjct: 403 VCGSCQLGKQVRIARKKTTDILTGQSLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVGFLREKAEAPNVIKILCKKLQNEQGKVIVRIRSDHGRE 502
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME) HSP 1 Score: 68.2 bits (165), Expect = 7.880e-10 Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 31 RLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE*HGH 345
++C C K ++ R PK + ++T + L +DL GP ++GG R++M IDDF+R+ V L KS +RD + + G K R+D GGE H
Sbjct: 347 QVCSSCIKGKLSRKPFPKESLSKTTKRLELLHMDLCGPMPTKTVGGRRYLMTIIDDFSRYTFVYLLTEKSQDERVIRDFIAEMKTQYGEKPKCFRSDRGGEFMSH 451
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0V1LCB2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1LCB2_9BILA) HSP 1 Score: 66.2 bits (160), Expect = 7.890e-10 Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 37 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
CV C K + R PKS R++ + D+ GP AS+GG R+ + IDDF+R V FLKHK++A +D + ++ +RTD G E
Sbjct: 100 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76464.15318.1 >prot_H-elongata_contig76464.15318.1 ID=prot_H-elongata_contig76464.15318.1|Name=mRNA_H-elongata_contig76464.15318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp MAGVQLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHback to top mRNA from alignment at H-elongata_contig76464:319..969- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76464.15318.1 ID=mRNA_H-elongata_contig76464.15318.1|Name=mRNA_H-elongata_contig76464.15318.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig76464:319..969- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76464:319..969- >mRNA_H-elongata_contig76464.15318.1 ID=mRNA_H-elongata_contig76464.15318.1|Name=mRNA_H-elongata_contig76464.15318.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig76464:319..969- (Himanthalia elongata Himel1 dioecious)back to top |