mRNA_H-elongata_contig76464.15318.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76464.15318.1
Unique NamemRNA_H-elongata_contig76464.15318.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A085N151_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N151_9BILA)

HSP 1 Score: 71.6 bits (174), Expect = 4.410e-11
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   37 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            C  C + ++ +   P S ++R  +    +  DL GP   A+  GNR+ +  IDD++R+ +VR LKHKS   NA+++IV ++    G K  V+RTD G E
Sbjct:  462 CECCIRGKLNQQPFPNS-KSRAAKPLELIHSDLCGPMQTATPSGNRYCLTVIDDYSRYAVVRLLKHKSQVPNAIQEIVREWTTQVGYKPKVLRTDNGKE 559          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A558HBQ0_9GAMM (DDE-type integrase/transposase/recombinase (Fragment) n=2 Tax=Cobetia crustatorum TaxID=553385 RepID=A0A558HBQ0_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 6.690e-11
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   13 QLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            +L  + ++C  C   +  R +  K   N T R    L +DL+GP    S GG +++++ +DDFTRF  V FLK KS+  + ++ I+      +G ++  IR+D G E
Sbjct:   80 KLQKVDKICGECQLGKQIRSSHKKVNSNTTSRPLELLHMDLIGPTRTESRGGKKYILVIVDDFTRFTWVSFLKDKSETLDEVKKIIKRIQNEKGSQVYKIRSDHGSE 186          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-10
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 3
Query:  348 TPPYTLQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAHVCDMWNRCTSSSLDSGTSPYELWYG 557
            TP Y+LQYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM   C+  N     +     SPYE+WYG
Sbjct:   72 TPAYSLQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHIACFANPDSMSPYEMWYG 148          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY)

HSP 1 Score: 70.1 bits (170), Expect = 1.580e-10
Identity = 39/109 (35.78%), Postives = 54/109 (49.54%), Query Frame = 1
Query:    7 GVQLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            G++ SG    CV C K +  R   P+   +R       L  DL GP +  S+GG R+V+  IDD+TR   V FLK K++    L +         G +I  IR+D GGE
Sbjct:  114 GLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGE 222          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0V1LL02_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1LL02_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 2.160e-10
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 1
Query:   37 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            CV C K +  R   PKS   R++     +  D+ GP   AS+GG R+ +  IDDF+R   V FLKHK++A    +D +         ++  +RTD G E
Sbjct:   43 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQAASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 141          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0A9XD75_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XD75_LYGHE)

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-10
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   82 KSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            K +++R       L +DL GP   AS+GG RF+   +DD +R+  V FLKHKSDA    +D         GLKI +IRTDGG E
Sbjct:  239 KPSKHRAKNILDLLHLDLCGPMETASIGGKRFMFTIVDDCSRYTHVFFLKHKSDAFAVFKDFQTLVERQMGLKIKMIRTDGGTE 322          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6P9DXA8_JUGRE (uncharacterized protein LOC118344254 n=3 Tax=Juglans TaxID=16718 RepID=A0A6P9DXA8_JUGRE)

HSP 1 Score: 69.7 bits (169), Expect = 2.440e-10
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   34 LCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            +C  C   +  R A   +T   T+R    L IDL+GP    SLGG R++++ +DDFTR+  V FL+ K +A N +R +       +G  I  IR+D G E
Sbjct:  870 VCGSCQLGKQVRTAHKNTTAILTERPLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVEFLREKGEAPNVIRTLCKKLQNEQGKAIVRIRSDHGRE 969          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: UPI001C718580 (uncharacterized protein LOC122278499 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C718580)

HSP 1 Score: 68.2 bits (165), Expect = 7.620e-10
Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   34 LCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            +C  C   +  R A  K+T+  T +    L IDL+GP    SLGG R++++ +DDFTR+  V FL+ K++A N ++ +       +G  I  IR+D G E
Sbjct:  403 VCGSCQLGKQVRIARKKTTDILTGQSLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVGFLREKAEAPNVIKILCKKLQNEQGKVIVRIRSDHGRE 502          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME)

HSP 1 Score: 68.2 bits (165), Expect = 7.880e-10
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   31 RLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE*HGH 345
            ++C  C K ++ R   PK + ++T +    L +DL GP    ++GG R++M  IDDF+R+  V  L  KS     +RD + +     G K    R+D GGE   H
Sbjct:  347 QVCSSCIKGKLSRKPFPKESLSKTTKRLELLHMDLCGPMPTKTVGGRRYLMTIIDDFSRYTFVYLLTEKSQDERVIRDFIAEMKTQYGEKPKCFRSDRGGEFMSH 451          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0V1LCB2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1LCB2_9BILA)

HSP 1 Score: 66.2 bits (160), Expect = 7.890e-10
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 1
Query:   37 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 333
            CV C K +  R   PKS   R++     +  D+ GP   AS+GG R+ +  IDDF+R   V FLKHK++A    +D +         ++  +RTD G E
Sbjct:  100 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A085N151_9BILA4.410e-1136.36Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A558HBQ0_9GAMM6.690e-1132.71DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A6H5KKD1_9PHAE1.180e-1044.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1LP39_PHOPY1.580e-1035.78Integrase catalytic domain-containing protein (Fra... [more]
A0A0V1LL02_9BILA2.160e-1035.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9XD75_LYGHE2.300e-1044.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A6P9DXA8_JUGRE2.440e-1037.00uncharacterized protein LOC118344254 n=3 Tax=Jugla... [more]
UPI001C7185807.620e-1036.00uncharacterized protein LOC122278499 n=1 Tax=Carya... [more]
A0A6V7M0T8_9HYME7.880e-1033.33Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]
A0A0V1LCB2_9BILA7.890e-1035.35Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76464contigH-elongata_contig76464:319..969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue2e-10
Seed eggNOG ortholog4558.Sb10g023023.1
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size611
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76464.15318.1prot_H-elongata_contig76464.15318.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76464 634..969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.896297-UTR-H-elongata_contig76464:318..5851622931168.896297-UTR-H-elongata_contig76464:318..585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76464 319..585 -
1691679726.5502958-UTR-H-elongata_contig76464:318..5851691679726.5502958-UTR-H-elongata_contig76464:318..585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76464 319..585 -
1622931168.9214144-UTR-H-elongata_contig76464:625..6331622931168.9214144-UTR-H-elongata_contig76464:625..633Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76464 626..633 -
1691679726.5619707-UTR-H-elongata_contig76464:625..6331691679726.5619707-UTR-H-elongata_contig76464:625..633Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76464 626..633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.94309-CDS-H-elongata_contig76464:633..9691622931168.94309-CDS-H-elongata_contig76464:633..969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76464 634..969 -
1691679726.5735314-CDS-H-elongata_contig76464:633..9691691679726.5735314-CDS-H-elongata_contig76464:633..969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76464 634..969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76464.15318.1

>prot_H-elongata_contig76464.15318.1 ID=prot_H-elongata_contig76464.15318.1|Name=mRNA_H-elongata_contig76464.15318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MAGVQLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFH
EASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLK
IGVIRTDGGGE*
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mRNA from alignment at H-elongata_contig76464:319..969-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76464.15318.1 ID=mRNA_H-elongata_contig76464.15318.1|Name=mRNA_H-elongata_contig76464.15318.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig76464:319..969- (Himanthalia elongata Himel1 dioecious)
ATGGCGGGCGTGCAATTAAGCGGAATTTGGCGACTATGCGTTCACTGCTC CAAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACGGAGAATCGGA CTGACAGGCACGCGGGACGGCTGTTTATTGATCTCTTAGGCCCCTTTCAC GAGGCGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGACTT CACCCGCTTCAAAATGGTTCGTTTCCTCAAACACAAGAGCGACGCCACGA ATGCGTTAAGGGACATAGTCAACGACTACCTCGCGCCCGAGGGCCTCAAG ATCGGCGTCATCCGCACGGACGGTGGGGGAGAATAGCACGGCCAGTTCTT GTCTTTCCTGAGTAAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATA CCCTCCAATACAATGGCGTCGTGGAGCGTGCTTTGGGGCTACTGCGCGAC AAGACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAGCGACCGTCT ATGGGCAGAAGCTATGGCGCATGTATGCGATATGTGGAACCGATGCACCT CATCTTCCCTCGACAGCGGCACCTCGCCATATGAGCTTTGGTACGGCCGA CGTCCGACATTCGACAACATGCCCCCATTCGGGACCGTGGGATATCCACG A
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Coding sequence (CDS) from alignment at H-elongata_contig76464:319..969-

>mRNA_H-elongata_contig76464.15318.1 ID=mRNA_H-elongata_contig76464.15318.1|Name=mRNA_H-elongata_contig76464.15318.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig76464:319..969- (Himanthalia elongata Himel1 dioecious)
ATGGCGGGCGTGCAATTAAGCGGAATTTGGCGACTATGCGTTCACTGCTC
CAAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACGGAGAATCGGA
CTGACAGGCACGCGGGACGGCTGTTTATTGATCTCTTAGGCCCCTTTCAC
GAGGCGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGACTT
CACCCGCTTCAAAATGGTTCGTTTCCTCAAACACAAGAGCGACGCCACGA
ATGCGTTAAGGGACATAGTCAACGACTACCTCGCGCCCGAGGGCCTCAAG
ATCGGCGTCATCCGCACGGACGGTGGGGGAGAATAGATGGCGGGCGTGCA
ATTAAGCGGAATTTGGCGACTATGCGTTCACTGCTCCAAATCTAGGGTGC
GGCGATACGCCGTGCCTAAATCCACGGAGAATCGGACTGACAGGCACGCG
GGACGGCTGTTTATTGATCTCTTAGGCCCCTTTCACGAGGCGTCTCTCGG
AGGAAACAGATTCGTCATGCTGTGCATTGACGACTTCACCCGCTTCAAAA
TGGTTCGTTTCCTCAAACACAAGAGCGACGCCACGAATGCGTTAAGGGAC
ATAGTCAACGACTACCTCGCGCCCGAGGGCCTCAAGATCGGCGTCATCCG
CACGGACGGTGGGGGAGAATAG
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