mRNA_H-elongata_contig76459.15317.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76459.15317.1
Unique NamemRNA_H-elongata_contig76459.15317.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76459.15317.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.270e-20
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   31 SGLGTRATGMPTLRAIGASHAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 192
            SG G   TG   +RAIGASHAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW
Sbjct:  509 SGGGVGTTGG--VRAIGASHAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 560
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BLAST of mRNA_H-elongata_contig76459.15317.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.380e-15
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   43 TRATGMPTLRAIGASHAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 192
            +R+    TLR  GA+HAPIT+ GYL+KKGK+GLKNWQ+RWFVLEG+KLIW
Sbjct:  400 SRSQSPGTLR--GATHAPITKCGYLHKKGKTGLKNWQRRWFVLEGTKLIW 447
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BLAST of mRNA_H-elongata_contig76459.15317.1 vs. uniprot
Match: A0A3B3ZJ74_9GOBI (PH domain-containing protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZJ74_9GOBI)

HSP 1 Score: 47.4 bits (111), Expect = 4.260e-5
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   91 APITRQGYLYKKGKSGLKNWQKRWFVL 171
            A +T+QG+LYK+G SG+K W KRWFVL
Sbjct:   53 AVVTKQGWLYKQGSSGVKQWNKRWFVL 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76459.15317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRN5_9PHAE1.270e-2085.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA8.380e-1570.00LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A3B3ZJ74_9GOBI4.260e-566.67PH domain-containing protein n=1 Tax=Periophthalmu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76459contigH-elongata_contig76459:2396..2590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.8521187-CDS-H-elongata_contig76459:2395..25901622931168.8521187-CDS-H-elongata_contig76459:2395..2590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76459 2396..2590 +
1691679726.5337617-CDS-H-elongata_contig76459:2395..25901691679726.5337617-CDS-H-elongata_contig76459:2395..2590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76459 2396..2590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76459.15317.1prot_H-elongata_contig76459.15317.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76459 2396..2590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76459.15317.1

>prot_H-elongata_contig76459.15317.1 ID=prot_H-elongata_contig76459.15317.1|Name=mRNA_H-elongata_contig76459.15317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
RSPRDGARSDSGLGTRATGMPTLRAIGASHAPITRQGYLYKKGKSGLKNW
QKRWFVLEGSKLIW*
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mRNA from alignment at H-elongata_contig76459:2396..2590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76459.15317.1 ID=mRNA_H-elongata_contig76459.15317.1|Name=mRNA_H-elongata_contig76459.15317.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig76459:2396..2590+ (Himanthalia elongata Himel1 dioecious)
CGATCTCCGCGAGATGGCGCGAGGTCAGACAGCGGGTTGGGCACGAGGGC
GACGGGGATGCCAACGTTACGAGCGATAGGCGCGAGCCACGCGCCGATTA
CGCGACAAGGGTACCTCTACAAGAAGGGGAAAAGTGGGCTGAAGAACTGG
CAGAAGCGGTGGTTCGTGCTGGAGGGGTCGAAACTCATCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig76459:2396..2590+

>mRNA_H-elongata_contig76459.15317.1 ID=mRNA_H-elongata_contig76459.15317.1|Name=mRNA_H-elongata_contig76459.15317.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig76459:2396..2590+ (Himanthalia elongata Himel1 dioecious)
CGATCTCCGCGAGATGGCGCGAGGTCAGACAGCGGGTTGGGCACGAGGGC
GACGGGGATGCCAACGTTACGAGCGATAGGCGCGAGCCACGCGCCGATTA
CGCGACAAGGGTACCTCTACAAGAAGGGGAAAAGTGGGCTGAAGAACTGG
CAGAAGCGGTGGTTCGTGCTGGAGGGGTCGAAACTCATCTGGTGACGATC
TCCGCGAGATGGCGCGAGGTCAGACAGCGGGTTGGGCACGAGGGCGACGG
GGATGCCAACGTTACGAGCGATAGGCGCGAGCCACGCGCCGATTACGCGA
CAAGGGTACCTCTACAAGAAGGGGAAAAGTGGGCTGAAGAACTGGCAGAA
GCGGTGGTTCGTGCTGGAGGGGTCGAAACTCATCTGGTGA
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