mRNA_H-elongata_contig764.15315.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig764.15315.1
Unique NamemRNA_H-elongata_contig764.15315.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig764.15315.1 vs. uniprot
Match: D7FNR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.010e-22
Identity = 44/53 (83.02%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    7 REMLVGADRCLGDVVSEMLSTIEDSDDPHEEAHVYLVTLFPQFSHIFSELKEA 165
            REMLVGADRCLGD+VSEML+TIED+D+ HE+AH+YL TLFPQFSHIFSE+KEA
Sbjct:  281 REMLVGADRCLGDIVSEMLATIEDNDESHEDAHIYLCTLFPQFSHIFSEMKEA 333
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BLAST of mRNA_H-elongata_contig764.15315.1 vs. uniprot
Match: A0A6H5L333_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L333_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.280e-21
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   13 MLVGADRCLGDVVSEMLSTIEDSDDPHEEAHVYLVTLFPQFSHIFSELKE 162
            MLVG DRCLGD+VSEMLSTIED+D  HEEAH+YL TLFPQF+HIFSE+KE
Sbjct:    1 MLVGTDRCLGDIVSEMLSTIEDNDKSHEEAHIYLCTLFPQFAHIFSEMKE 50
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BLAST of mRNA_H-elongata_contig764.15315.1 vs. uniprot
Match: I2CQC4_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQC4_NANGC)

HSP 1 Score: 52.4 bits (124), Expect = 1.060e-7
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 FCREMLVGADRCLGDVVSEMLSTIEDSDDPHEEAHVYLVTLFPQFSHIFSELKEASG 171
            F R+ L+G +RC G++V+EML  +E+SDDP E      +TLFP  + ++ ++ E  G
Sbjct:    3 FRRDALMGLERCAGELVTEMLLLVEESDDPEEAEMRLALTLFPLLTDLYRQMLEGEG 59
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BLAST of mRNA_H-elongata_contig764.15315.1 vs. uniprot
Match: A0A7S2UYJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYJ0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.000e-6
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    7 REMLVGADRCLGDVVSEMLSTIEDSDDPHEEAHVYLVTLFPQFSHIFSEL 156
            R++L G DRCLG++VS++L  +ED     EEA V L+ LFP+FS +F +L
Sbjct:   84 RDLLEGTDRCLGEIVSDVLRALEDL--AVEEAQVKLLGLFPEFSSLFQQL 131
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BLAST of mRNA_H-elongata_contig764.15315.1 vs. uniprot
Match: A0A4D9CSC2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSC2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.270e-6
Identity = 22/57 (38.60%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 FCREMLVGADRCLGDVVSEMLSTIEDSDDPHEEAHVYLVTLFPQFSHIFSELKEASG 171
            F R+ L+G +RC G++V+EML  +E+SD+P E      +TLFP  + ++ ++ E  G
Sbjct:  241 FRRDALMGLERCAGELVTEMLLLVEESDEPEEAEMRLALTLFPLLTDLYRQMLEGEG 297
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BLAST of mRNA_H-elongata_contig764.15315.1 vs. uniprot
Match: A0A6A4ZLR0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZLR0_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 8.400e-5
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    7 REMLVGADRCLGDVVSEMLSTIEDSDDPHEEAHVYLVT-LFPQFSHIFSELK 159
            R+ L+G +RC+G+VV+EML  IED D   EE  + LV  +FP F+ +FS+LK
Sbjct:  164 RDGLLGLERCMGEVVTEMLHIIEDDDG--EEGEMRLVMDVFPSFADLFSQLK 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig764.15315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FNR0_ECTSI3.010e-2283.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L333_9PHAE6.280e-2182.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I2CQC4_NANGC1.060e-740.35Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2UYJ0_9STRA4.000e-650.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CSC2_9STRA7.270e-638.60Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6A4ZLR0_9STRA8.400e-550.00Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig764contigH-elongata_contig764:18854..19024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.3e-17
Seed eggNOG ortholog2880.D7FNR0
EggNOG OGs293KV@1,2RAHN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.6648984-CDS-H-elongata_contig764:18853..190121622931168.6648984-CDS-H-elongata_contig764:18853..19012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig764 18854..19012 -
1691679726.4550524-CDS-H-elongata_contig764:18853..190121691679726.4550524-CDS-H-elongata_contig764:18853..19012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig764 18854..19012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.6863964-UTR-H-elongata_contig764:19012..190241622931168.6863964-UTR-H-elongata_contig764:19012..19024Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig764 19013..19024 -
1691679726.4696875-UTR-H-elongata_contig764:19012..190241691679726.4696875-UTR-H-elongata_contig764:19012..19024Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig764 19013..19024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig764.15315.1prot_H-elongata_contig764.15315.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig764 18854..19012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig764.15315.1

>prot_H-elongata_contig764.15315.1 ID=prot_H-elongata_contig764.15315.1|Name=mRNA_H-elongata_contig764.15315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MLVGADRCLGDVVSEMLSTIEDSDDPHEEAHVYLVTLFPQFSHIFSELKE
ASG
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mRNA from alignment at H-elongata_contig764:18854..19024-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig764.15315.1 ID=mRNA_H-elongata_contig764.15315.1|Name=mRNA_H-elongata_contig764.15315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig764:18854..19024- (Himanthalia elongata Himel1 dioecious)
TTTTGCAGGGAAATGCTCGTCGGGGCGGATAGGTGTCTGGGCGACGTGGT
GTCGGAAATGCTGTCGACCATCGAGGACAGCGACGACCCCCATGAGGAAG
CGCACGTCTACCTGGTGACCCTTTTCCCGCAGTTCTCCCACATCTTCTCG
GAACTCAAGGAGGCGAGTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig764:18854..19024-

>mRNA_H-elongata_contig764.15315.1 ID=mRNA_H-elongata_contig764.15315.1|Name=mRNA_H-elongata_contig764.15315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig764:18854..19024- (Himanthalia elongata Himel1 dioecious)
ATGCTCGTCGGGGCGGATAGGTGTCTGGGCGACGTGGTGTCGGAAATGCT
GTCGACCATCGAGGACAGCGACGACCCCCATGAGGAAGCGCACGTCTACC
TGGTGACCCTTTTCCCGCAGTTCTCCCACATCTTCTCGGAACTCAAGGAG
GCGAGTGGCATGCTCGTCGGGGCGGATAGGTGTCTGGGCGACGTGGTGTC
GGAAATGCTGTCGACCATCGAGGACAGCGACGACCCCCATGAGGAAGCGC
ACGTCTACCTGGTGACCCTTTTCCCGCAGTTCTCCCACATCTTCTCGGAA
CTCAAGGAGGCGAGTGGC
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