mRNA_H-elongata_contig76394.15314.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76394.15314.1
Unique NamemRNA_H-elongata_contig76394.15314.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76394.15314.1 vs. uniprot
Match: D7FJF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.810e-33
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 QRLLRISSAAAIMNGIFWSFYVGVLEAQLPSTTWEPWGYLGLGCTVLMFGVSNTFAKHWVSNVSYFSDYRLLSIATHTFFG 243
            QR +RISS+  ++NG++WSFYVGVLE  LP+TTWEPWGYLGLG T +M   ++TFA+HWVS +SY  + RLLSI TH FFG
Sbjct:   32 QRNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPELRLLSIGTHNFFG 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76394.15314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJF7_ECTSI2.810e-3364.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76394contigH-elongata_contig76394:1984..2835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006170.1
Exons3
Model size243
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76394.15314.1prot_H-elongata_contig76394.15314.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76394 1984..2835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.5848773-CDS-H-elongata_contig76394:1983..20961622931168.5848773-CDS-H-elongata_contig76394:1983..2096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76394 1984..2096 +
1691679726.4146285-CDS-H-elongata_contig76394:1983..20961691679726.4146285-CDS-H-elongata_contig76394:1983..2096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76394 1984..2096 +
1622931168.5999627-CDS-H-elongata_contig76394:2430..24881622931168.5999627-CDS-H-elongata_contig76394:2430..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76394 2431..2488 +
1691679726.4332495-CDS-H-elongata_contig76394:2430..24881691679726.4332495-CDS-H-elongata_contig76394:2430..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76394 2431..2488 +
1622931168.6197238-CDS-H-elongata_contig76394:2763..28351622931168.6197238-CDS-H-elongata_contig76394:2763..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76394 2764..2835 +
1691679726.444143-CDS-H-elongata_contig76394:2763..28351691679726.444143-CDS-H-elongata_contig76394:2763..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76394 2764..2835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76394.15314.1

>prot_H-elongata_contig76394.15314.1 ID=prot_H-elongata_contig76394.15314.1|Name=mRNA_H-elongata_contig76394.15314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
QRLLRISSAAAIMNGIFWSFYVGVLEAQLPSTTWEPWGYLGLGCTVLMFG
VSNTFAKHWVSNVSYFSDYRLLSIATHTFFG
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mRNA from alignment at H-elongata_contig76394:1984..2835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76394.15314.1 ID=mRNA_H-elongata_contig76394.15314.1|Name=mRNA_H-elongata_contig76394.15314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=852bp|location=Sequence derived from alignment at H-elongata_contig76394:1984..2835+ (Himanthalia elongata Himel1 dioecious)
CAGAGACTACTCAGAATCTCGAGCGCGGCGGCGATCATGAACGGGATATT
TTGGTCTTTCTACGTCGGCGTACTCGAGGCACAGCTCCCATCTACCACGT
GGGAACCATGGGGGTAAGAGTGTCGCCATATACTGGGGAGAGGGGGAGGG
GTAACTCGCGCTCTTCCAGCCAGCTCATGTAATCAATCCTCACAGTTCCT
CCCTCCGAGAAAGCATGCTGCAGGTTTGGATGGCGATCAATTGCTCGCGC
TTCGCTAATCGCCGAGATCAAATATTCCCACATATCCACCTTAAAGATTA
CGGTGCTTCGTTACAACACAACGTCGCTCCAGGAGCGACTTTAATGGATC
CCCCTTGGACGACAGCGCGTTGATGATGCCTTGGTGCGATCGGTGCCTTT
TATTTATAACCTCTCATATTTGTTTTCCAACCCTTGTGCTGTCGCAGGTA
CTTGGGGCTTGGGTGCACGGTGCTAATGTTTGGGGTGTCGAACACGTTTG
CTAAGGTACGCAGCCTCGTTGCAGGCGCACATCTTCCACGACCGTGTTCC
GTGGCCGAACTGCCCTAGACAGGCATGCATACAGTCCCTCAACGGCCCTA
ACCTTATTGCAGAATCCTCAATGTGAAGGTTTTATTTTCCTCGTCCAGAA
AGGCACACACATATAGGCGGTATACGGCGGTCTATTTCACGTACGAGATG
ATATCCTCATTGCAAGTCTGGTATATTTTCACGTGACAATGCGCCGCAAC
CTTTGTCTTCGAATCCCCCGCCCGGTGCAGCACTGGGTCAGCAACGTGTC
CTACTTTTCTGACTACAGATTGCTGTCCATCGCGACGCACACCTTCTTCG
GG
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Coding sequence (CDS) from alignment at H-elongata_contig76394:1984..2835+

>mRNA_H-elongata_contig76394.15314.1 ID=mRNA_H-elongata_contig76394.15314.1|Name=mRNA_H-elongata_contig76394.15314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig76394:1984..2835+ (Himanthalia elongata Himel1 dioecious)
CAGAGACTACTCAGAATCTCGAGCGCGGCGGCGATCATGAACGGGATATT
TTGGTCTTTCTACGTCGGCGTACTCGAGGCACAGCTCCCATCTACCACGT
GGGAACCATGGGGCAGAGACTACTCAGAATCTCGAGCGCGGCGGCGATCA
TGAACGGGATATTTTGGTCTTTCTACGTCGGCGTACTCGAGGCACAGCTC
CCATCTACCACGTGGGAACCATGGGGGTACTTGGGGCTTGGGTGCACGGT
GCTAATGTTTGGGGTGTCGAACACGTTTGCTAAGGTACTTGGGGCTTGGG
TGCACGGTGCTAATGTTTGGGGTGTCGAACACGTTTGCTAAGCACTGGGT
CAGCAACGTGTCCTACTTTTCTGACTACAGATTGCTGTCCATCGCGACGC
ACACCTTCTTCGGGCACTGGGTCAGCAACGTGTCCTACTTTTCTGACTAC
AGATTGCTGTCCATCGCGACGCACACCTTCTTCGGG
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