prot_H-elongata_contig76369.15311.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76369.15311.1
Unique Nameprot_H-elongata_contig76369.15311.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: D8LDI4_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-21
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 53
            VELNKSYDFNKITEAGAKL+PL GPG+TGIKNLGNSCYMNSCLQVL T
Sbjct:  355 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQVLCT 402          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A836CMU5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.120e-19
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVL 51
            VELNKSYDF+KITEAG KL PL GPGYTG+KNLGNSCYMNSCLQ+L
Sbjct:  323 VELNKSYDFSKITEAGKKLTPLQGPGYTGLKNLGNSCYMNSCLQLL 368          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A7S2V2B3_9STRA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.110e-18
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVL 51
            VELNK+YDF+KITEAGA+L+PL+G G+TGIKNLGNSCY+NS LQVL
Sbjct:  199 VELNKTYDFSKITEAGAQLEPLYGAGFTGIKNLGNSCYINSVLQVL 244          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A7S0N978_9CHLO (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N978_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 53
            VELNKS++F+KITEAGA L PL GPGY G+KNLGNSCYMNS +QVL T
Sbjct:  295 VELNKSFEFDKITEAGADLAPLSGPGYVGLKNLGNSCYMNSVMQVLYT 342          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: I0YIM7_COCSC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIM7_COCSC)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-14
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 53
            ++LN S++F+KITE+G  L+PL GPGY G+KNLGNSCYMNS LQVL T
Sbjct:  303 IDLNMSFEFDKITESGTALEPLSGPGYVGLKNLGNSCYMNSVLQVLWT 350          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A8J9RIB1_9CHLO (Ubiquitin carboxyl-terminal hydrolase 5 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIB1_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 2.170e-14
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 53
            ++LN S++F+K+TE+GA L+PL GPG+ G+KNLGNSCYMNS LQVL T
Sbjct:  303 IDLNMSFEFDKMTESGAALEPLTGPGFVGLKNLGNSCYMNSVLQVLWT 350          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A397G6L8_9GLOM (Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G6L8_9GLOM)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-13
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVTFDCY 57
            +E N  YDF+ +TE G +L+PL+GPGYTGIKNLGNSCYM S LQ + + D +
Sbjct:  280 IEENLKYDFSMVTEDGKELEPLFGPGYTGIKNLGNSCYMGSVLQSVFSLDSF 331          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A2K3E0J5_CHLRE (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E0J5_CHLRE)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 0
Query:    1 MKPRKVELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 53
            M   + +LN  Y+F++ITEAGA L PL GPG+TG+ NLGNSCYMNS LQ+L+T
Sbjct:  292 MSELQADLNTGYEFSRITEAGAALVPLAGPGHTGLINLGNSCYMNSVLQLLLT 344          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A250XHT0_9CHLO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XHT0_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.930e-13
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0
Query:    6 VELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 53
            + LN SY+F +ITE+G  L+PL+GPG+ G+ NLGNSCYMNS LQ+L+T
Sbjct:  297 IGLNLSYEFGRITESGTALRPLYGPGHVGLINLGNSCYMNSVLQILLT 344          
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Match: A0A2G8JS06_STIJA (Ubiquitinyl hydrolase 1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JS06_STIJA)

HSP 1 Score: 72.0 bits (175), Expect = 2.370e-13
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    6 VELN-KSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQVLVT 53
            ++LN + ++++ + EAG+KLKPL+GPGYTG+KNLGNSCYMNS LQVL T
Sbjct:  289 IDLNTRVWEWDAMQEAGSKLKPLYGPGYTGLKNLGNSCYMNSVLQVLFT 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76369.15311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDI4_ECTSI1.060e-2191.67Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A836CMU5_9STRA2.120e-1986.96Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A7S2V2B3_9STRA9.110e-1880.43Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibroca... [more]
A0A7S0N978_9CHLO1.050e-1677.08Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramim... [more]
I0YIM7_COCSC1.160e-1468.75Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cocc... [more]
A0A8J9RIB1_9CHLO2.170e-1466.67Ubiquitin carboxyl-terminal hydrolase 5 n=1 Tax=Co... [more]
A0A397G6L8_9GLOM1.410e-1359.62Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epiga... [more]
A0A2K3E0J5_CHLRE1.410e-1362.26Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Chla... [more]
A0A250XHT0_9CHLO1.930e-1362.50Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chla... [more]
A0A2G8JS06_STIJA2.370e-1365.31Ubiquitinyl hydrolase 1 n=1 Tax=Stichopus japonicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 33..53
e-value: 1.7E-6
score: 27.7
NoneNo IPR availableGENE3D3.90.70.10coord: 26..55
e-value: 9.0E-12
score: 46.4
NoneNo IPR availablePANTHERPTHR21646FAMILY NOT NAMEDcoord: 5..53
NoneNo IPR availablePANTHERPTHR21646:SF10coord: 5..53
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00972USP_1coord: 34..49
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 33..57
score: 10.863
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 24..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76369contigH-elongata_contig76369:236..409 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76369.15311.1mRNA_H-elongata_contig76369.15311.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76369 236..409 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76369.15311.1 ID=prot_H-elongata_contig76369.15311.1|Name=mRNA_H-elongata_contig76369.15311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MKPRKVELNKSYDFNKITEAGAKLKPLWGPGYTGIKNLGNSCYMNSCLQV
LVTFDCY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf