mRNA_H-elongata_contig76344.15310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76344.15310.1
Unique NamemRNA_H-elongata_contig76344.15310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: D7G5K7_ECTSI (RME1L2, RME1-like GTPase/ATPase without a C-terminal EH domain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K7_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 3.310e-77
Identity = 119/163 (73.01%), Postives = 147/163 (90.18%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDIHKV 489
            +V+G+LMWS+GKVFD+PE+VRVY+GSFWD+PLKHT H +LFE+DQ++LTRELT+LPRLSA RKI+Q+I+R N VRAHACVLSYLREQTPW+YG +RRR +LLEN+E V ETVR ++GLHEADMPDA ALR NLQSF+F+SFP LTP+ LR+L  VV+VDIH+V
Sbjct:  234 RVYGALMWSLGKVFDNPEVVRVYIGSFWDQPLKHTAHEKLFEADQESLTRELTDLPRLSATRKINQLIKRANSVRAHACVLSYLREQTPWMYGRARRREDLLENMEGVLETVRAKHGLHEADMPDADALRANLQSFDFASFPILTPAALRQLRHVVDVDIHQV 396          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A6H5JAQ6_9PHAE (Dynamin-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ6_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.070e-76
Identity = 116/162 (71.60%), Postives = 148/162 (91.36%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDIHK 486
            +V+G+LMWS+GKVFD+PE+VRVY+GSFWD+PLKHT H++LFE+DQ++LTRELT+LPRLSA RKI+Q+I+RTN VRAHACVLSYLREQ PW+YG +RRR +LL+N++ V ETVR ++GLHEADMPDA ALR NLQSF+F+SFP LTP+TL++L  VV+VDIH+
Sbjct:  146 RVYGTLMWSLGKVFDNPEVVRVYIGSFWDQPLKHTAHKKLFETDQESLTRELTDLPRLSATRKINQLIKRTNSVRAHACVLSYLREQMPWMYGRARRREDLLDNMDGVLETVRAKHGLHEADMPDADALRANLQSFDFASFPILTPATLQQLRHVVDVDIHQ 307          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A835YIA7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.190e-44
Identity = 82/163 (50.31%), Postives = 113/163 (69.33%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDIHKV 489
            +V+G+LMW+MG +F +PE+VRVY+GSFWDRPLK+T H RLFE DQ AL  EL  LP+ SA RK+  I+ R  R++AH CVL ++R Q          + ELLE+L  VFE VR ++GLHEAD+PD A     L++ + +  P L P+TL++L DVV+V+  +V
Sbjct:  185 RVYGALMWTMGTIFPNPEVVRVYVGSFWDRPLKYTAHARLFERDQTALLGELAALPKESATRKMDAIMARVKRLKAHVCVLGHIRAQA--------YKDELLEDLGGVFEEVRLKHGLHEADLPDVAKFGAVLRALDVADLPALRPATLQQLDDVVDVEFPRV 339          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: B8C4H7_THAPS (Eh domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4H7_THAPS)

HSP 1 Score: 144 bits (363), Expect = 1.280e-38
Identity = 71/164 (43.29%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSF-EFSSFPRLTPSTLRRLHDVVEVDIHKV 489
            +V+GSLMWSMGK+FDSPE+VRVY GS+W+  L +     +FE D+  L REL +LPR +A RK++Q++ R   V+ HAC+L  +R+ TP  +G  + R E+L  LE V + VR ++ L + DMP+ A     L +F +FS FP +  + + RL+ ++E DI ++
Sbjct:  219 RVYGSLMWSMGKIFDSPEVVRVYTGSYWNGSLVNNDFEHMFEKDEQLLVRELVDLPRCAAERKVNQMVNRIRLVKVHACILGTVRQMTPAFFGKKKTREEILNGLETVMDNVRVKFDLSKGDMPEPAEFAKCLDTFSDFSVFPPIDNTLIDRLNRLIEEDIPEI 382          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A7S2PYV9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PYV9_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.000e-37
Identity = 71/164 (43.29%), Postives = 106/164 (64.63%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSF-EFSSFPRLTPSTLRRLHDVVEVDIHKV 489
            +V+GSLMWSMGK+FDSPE+VRVY GS+W+  L +    ++F  D+  L REL +LPR +A RK++Q++ R   V+ H C+L  +R  TP  +G  R R ++L  L+ + + VR E+ L + DMPDA     NL  F +FS FP +  S +++L  +VE DI ++
Sbjct:  324 RVYGSLMWSMGKIFDSPEVVRVYTGSYWNGNLINNDFEKMFTKDEKLLVRELIDLPRCAAERKVNQMVNRIRLVKVHICILGTIRNMTPRFFGKKRSREQILAELDVILDNVRVEFNLSKGDMPDAKEFAANLNKFHDFSVFPPINRSLIKKLDSLVEKDIPEI 487          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A0C2G4C5_9BILA (DUF5600 domain-containing protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2G4C5_9BILA)

HSP 1 Score: 137 bits (344), Expect = 2.310e-37
Identity = 64/163 (39.26%), Postives = 108/163 (66.26%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDIHKV 489
            +V+G+LMWS+GKVF +PE+ RVY+G+FWD PL +  +RRLF+ +Q  L ++L  LPR +A RK++ +I+R    + HA ++S LR+Q P + G  +++ EL++NL+ +FE ++ E+ +   D PD   +R  LQ+ +F+ F  L P  L  +  ++  DI ++
Sbjct:    9 RVYGALMWSLGKVFKTPEVSRVYIGTFWDHPLHYDINRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKRARLAKVHAFIISELRKQMPSMIGREKKKKELIQNLDKIFEQLQREHNISPGDFPDVNKMREKLQNHDFTKFNPLKPKLLEIVDGMLASDIARL 171          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A077ZBA9_TRITR (Protein rme isoform c protein rme isoform b pro tein rme isoform a n=2 Tax=Trichuris TaxID=36086 RepID=A0A077ZBA9_TRITR)

HSP 1 Score: 142 bits (357), Expect = 1.090e-36
Identity = 66/163 (40.49%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDIHKV 489
            +V+G+LMWS+GKVF +PE+ RVY+GSFWD+PL H  +RRLFE +Q  L  +L  LPR +A RK++ +I+R    + HA ++SYLR   P + G  +R+ EL++NL+ ++E ++ E+ +   D PD   ++  LQ  +FS F  L P  +  +  ++  DI ++
Sbjct:  241 RVYGALMWSLGKVFRTPEVARVYIGSFWDQPLHHDINRRLFEDEQHDLFIDLQSLPRNAALRKLNDLIKRARLAKVHAYIISYLRRDMPSMMGKEKRKKELIQNLDKIYEQLQREHNISPGDFPDLKRMQEQLQHHDFSKFNSLKPKLIEMVDGMLSSDIARL 403          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A7S2KM23_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KM23_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.190e-36
Identity = 65/160 (40.62%), Postives = 102/160 (63.75%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDI 480
            +V+GSL+WSMGK+F +PE+ RVY GSFWD+PL H   + +FE D++ L  EL  LP  +AARK++++++R   ++ H C+L +L+ Q P L+G  + +  L++NL  V + V+  Y L + DMP+   L   L++  F SFP L    +  L+ + E DI
Sbjct:  265 RVYGSLLWSMGKIFQTPEVARVYCGSFWDQPLLHEDFKDMFERDEELLIEELMNLPASAAARKVNEVVKRIRAIKVHLCILGHLKRQMPLLFGREKTQMNLIKNLPSVLKEVKTIYDLSDGDMPNVNVLASKLRASNFQSFPTLDSKIIYELNAMTEHDI 424          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A7S1U175_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U175_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.320e-36
Identity = 58/160 (36.25%), Postives = 109/160 (68.12%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDI 480
            +V+G+L++++GK+  +PE+VRV++GSFWD+PL+H+ H+ +F+ D  +L +E+  LP  +A+RK+ ++++R   V+ HAC+L +LR + PW +G   R+ ++++NL+ +F+ V+++YGL   D P        L++F+F   P L  S L  L ++++  I
Sbjct:  255 RVYGALLFNIGKILQTPEVVRVFIGSFWDKPLQHSDHKAIFDRDAQSLMKEIEGLPADAASRKVDEMVKRVRLVKVHACILGHLRSKMPWFWGSEARKEQIIDNLDIIFDEVQQKYGLSAGDFPKTEEFATCLKTFDFRKLPTLEYSALETLQELLDKKI 414          
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Match: A0A6V7UEY6_9BILA (Hypothetical protein n=4 Tax=Meloidogyne TaxID=189290 RepID=A0A6V7UEY6_9BILA)

HSP 1 Score: 140 bits (353), Expect = 4.810e-36
Identity = 65/163 (39.88%), Postives = 110/163 (67.48%), Query Frame = 1
Query:    1 QVHGSLMWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELPRLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLEHVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVVEVDIHKV 489
            +V+G+LMWS+GKVF +PE+ RVY+G+FWD PL +  +RRLF+ +Q  L  +L  LPR +  RK++ +I+R    + HA ++S LR+Q P + G  +++ EL++ L+ +FE +++E+G+   D PD   +R NL++ +FS F  L P  L+ + D++  DI ++
Sbjct:  232 RVYGALMWSLGKVFKTPEVARVYIGTFWDHPLHYDINRRLFQDEQHDLFADLQSLPRNAVLRKLNDLIKRARLAKVHAYIISELRKQMPSMIGKEKKKKELIQKLDKLFEQLQKEHGISPGDFPDINKMRANLENADFSRFNALKPRLLQIVDDMLAKDIARL 394          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76344.15310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K7_ECTSI3.310e-7773.01RME1L2, RME1-like GTPase/ATPase without a C-termin... [more]
A0A6H5JAQ6_9PHAE1.070e-7671.60Dynamin-type G domain-containing protein n=1 Tax=E... [more]
A0A835YIA7_9STRA1.190e-4450.31P-loop containing nucleoside triphosphate hydrolas... [more]
B8C4H7_THAPS1.280e-3843.29Eh domain-containing protein (Fragment) n=1 Tax=Th... [more]
A0A7S2PYV9_9STRA1.000e-3743.29Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A0C2G4C5_9BILA2.310e-3739.26DUF5600 domain-containing protein n=1 Tax=Ancylost... [more]
A0A077ZBA9_TRITR1.090e-3640.49Protein rme isoform c protein rme isoform b pro te... [more]
A0A7S2KM23_9STRA2.190e-3640.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1U175_9STRA4.320e-3636.25Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6V7UEY6_9BILA4.810e-3639.88Hypothetical protein n=4 Tax=Meloidogyne TaxID=189... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76344contigH-elongata_contig76344:244..2737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.1
Seed ortholog evalue2.8e-63
Seed eggNOG ortholog2880.D7G5K7
KEGG koko:K12483
KEGG Pathwayko04144,map04144
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRME1L2, RME1-like GTPase/ATPase without a C-terminal EH domain
Ec32 orthologEc-22_001020.1
Exons4
Model size489
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76344.15310.1prot_H-elongata_contig76344.15310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76344 244..2719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.0783346-CDS-H-elongata_contig76344:243..3991622931168.0783346-CDS-H-elongata_contig76344:243..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 244..399 -
1691679726.194359-CDS-H-elongata_contig76344:243..3991691679726.194359-CDS-H-elongata_contig76344:243..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 244..399 -
1622931168.0926185-CDS-H-elongata_contig76344:800..8881622931168.0926185-CDS-H-elongata_contig76344:800..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 801..888 -
1691679726.2065063-CDS-H-elongata_contig76344:800..8881691679726.2065063-CDS-H-elongata_contig76344:800..888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 801..888 -
1622931168.1107838-CDS-H-elongata_contig76344:1917..20571622931168.1107838-CDS-H-elongata_contig76344:1917..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 1918..2057 -
1691679726.2188451-CDS-H-elongata_contig76344:1917..20571691679726.2188451-CDS-H-elongata_contig76344:1917..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 1918..2057 -
1622931168.1460686-CDS-H-elongata_contig76344:2632..27191622931168.1460686-CDS-H-elongata_contig76344:2632..2719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 2633..2719 -
1691679726.2297323-CDS-H-elongata_contig76344:2632..27191691679726.2297323-CDS-H-elongata_contig76344:2632..2719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76344 2633..2719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.166765-UTR-H-elongata_contig76344:2719..27371622931168.166765-UTR-H-elongata_contig76344:2719..2737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76344 2720..2737 -
1691679726.239246-UTR-H-elongata_contig76344:2719..27371691679726.239246-UTR-H-elongata_contig76344:2719..2737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76344 2720..2737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76344.15310.1

>prot_H-elongata_contig76344.15310.1 ID=prot_H-elongata_contig76344.15310.1|Name=mRNA_H-elongata_contig76344.15310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MWSMGKVFDSPEMVRVYLGSFWDRPLKHTTHRRLFESDQDALTRELTELP
RLSAARKISQIIRRTNRVRAHACVLSYLREQTPWLYGMSRRRAELLENLE
HVFETVREEYGLHEADMPDAAALRLNLQSFEFSSFPRLTPSTLRRLHDVV
EVDIHKV
back to top

mRNA from alignment at H-elongata_contig76344:244..2737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76344.15310.1 ID=mRNA_H-elongata_contig76344.15310.1|Name=mRNA_H-elongata_contig76344.15310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2494bp|location=Sequence derived from alignment at H-elongata_contig76344:244..2737- (Himanthalia elongata Himel1 dioecious)
CAGGTACATGGCTCCCTCATGTGGTCCATGGGCAAGGTTTTCGACAGTCC CGAGATGGTCCGCGTCTACCTCGGGAGCTTCTGGGATCGACCGCTCAAAC ATACCGTGAGTAGTTGGCCTTTTATCTCGCTGCCCAAATGGCCCGCGACG AGAAGCCCGAAAGATGACCAATGTGTGCGTGCGTGCGTGCGTTTATGTAT GTATGTGCTATTTATTTTTTTATTTTTTTATTTTTTTAAGCTTGCAAGCT TGTCTCGACGTCGTCTGAAGACGTGTGTGTGTGTGTTTTTTTTTCTCCTT CTCCGTTACTGCTCGCTGCGCGTTTTATTCCTTTTTATTCCTTTTTATTC CTTTTTATTCCTCTTATTCGTCTTGATTGTGCTAATTACAAGTCTTGTAC CGAAGTATGCCCAGAGCGGTACAACCACGGCTCCCTACCCTACCCTACCC TACCCTACCCCAGGCGGCATGCAGCGAACCGCTGTGTTACATCCACCAAT GACTTACACAGAGCCATACAGGATAACATAATATAACATATATACATATG TTTGCGCGCTCTTGGCCTCCTCGACGGGCGATGACCCGCTAGCCCTAACC GCCGGCGGCGGATGAAGAAACCCTTGAACCAGCACTAGAGTCTCTTCACC GCGTTCCATGCACACGCCATCCCCGCGCAGACTCACCGTCGGCTCTTCGA GTCCGACCAGGACGCGCTGACGAGGGAGCTCACCGAACTCCCACGGCTAT CGGCGGCCCGGAAGATTAGCCAGATCATCCGAAGAACAAACCGCGTCCGA GCGCACGCCTGCGTGTTGAGGTGAGATGTTGCTTTCTGCTGTTGTTATTT TTGACGCTGGTTGGCACGTTCTGCCCTTGCGACCGAGGAACTGCTGTGGT GACACGGCGAAGGCGGGTGGTGGATAACTAGATAAACCTATCGACTGCCA ATTTTTTTGCGTTTGTTTTCGGATACCTTACGAAAGTCGGTGGACAACCC CCAGTCCCTTGGTCCCTGCCCGCTGCGGGTACACTCCGAAATGATGTGTC CAAAATCGCGCCAAAATAATTTTTGAAGCGAAGCCGGCCGGCCGACTCTC ACACAGTGACAATCCCACCCCCGCTGTCATCACGATACCCATGGGGGGGC ATAAGTACTCAATGGTTGCTCAACAGTCCAGAATCTGGTGCACAGGCATT TGCGGAAAACACTCGTCAGATGTGTCACATGTCCTCTATCTTCTGGGTGC AGACGGTGGAAAAACAAGCCACAGTAAGAATTTACGTACACGTGGGTTGA AAATTGATCGTTGTCTGTCCCGAGCGGGCTATCGGCAGACTGAAACGCGG ACGAGGTATTACGGCAGTCGACAGGGAACTGTGCCGCATCATGGGATTGC TTGCACAGTGCGTTTGGAGTCCACGTGGTGCGGATCCCTGCCCTGCTTTT GTGATGCTCCCACGAGTGAGATGCGACGAGACCTAGGCAAGGAAGCTGCG GTGCCAGCGATAAGTAGTGCAGACCGTGTCTCGGGAATGACGAGCGGATT GGATCGAATCGAATCAAACTGGATCGCAACTGCGGTTTCTAAACATCTTG GCCGTAAAATAACCGCTAAACCTTACTAAAACGAAATGTAGGTTTCTTCC TGCAGACTAAAGCATCATCCTGTGCTCAACGGATTGAGGTTTGCCTGACG GTGTCGGTAGCGAGATCGCGAGGTGCACGAAAGGTCAGACCCCACCAACC GTTCCCCCCCCGGCGGCCGCCTCGCTCTTATCGCCCCCCCCCCCCCGACT GCTCCGTTTTATTTCGCCTTCCACCCTTCGTACGCGATTTCGTGGCAAGC TACCTGCGCGAGCAGACGCCTTGGCTGTACGGCATGTCCAGGCGACGCGC GGAACTCTTGGAAAACCTAGAACACGTCTTCGAGACGGTGAGATTCCCAA GAGTCCACAGACAGACCTTCCCGTGTGCCTCGTAGCAGAGGCTTCAGGGC CAAGGCTACTGCTGCTCCCATCGAGCGTTTGGGCAGAGTGACGCTGAGCC TCTGCAGGCGCTGAGTGTTTCATCCACCAATACGCCTATCGCCGTTCGTC GCCAGACCTCCGTCATGAGGTTCTCCGGCTTCGAGGCAGACGCTGCCGTC AGTTACCCCCTTCACAGCATCGCCGTCCTCCGATATATACCAAAACAACC CGCGCGCGGATGGGATTGCGTATTCCACGTCTTAAGATGTGTACAAGAAG AAATATATCCTTGCTACCGGCAGAGCATGTTTTACCCTCTATATAGAAAT TAGAGAAGGGTTGCCTCGATCGCCCCGCGAAAAGGCAGGTGCGGGAAGAG TACGGTCTCCACGAGGCGGATATGCCGGATGCGGCCGCTTTGAGGTTAAA CCTGCAGAGCTTCGAGTTCTCGTCCTTTCCGAGGCTGACGCCATCAACGC TTCGTCGCCTCCACGACGTGGTGGAGGTTGACATCCACAAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76344:244..2737-

>mRNA_H-elongata_contig76344.15310.1 ID=mRNA_H-elongata_contig76344.15310.1|Name=mRNA_H-elongata_contig76344.15310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig76344:244..2737- (Himanthalia elongata Himel1 dioecious)
ATGTGGTCCATGGGCAAGGTTTTCGACAGTCCCGAGATGGTCCGCGTCTA
CCTCGGGAGCTTCTGGGATCGACCGCTCAAACATACCATGTGGTCCATGG
GCAAGGTTTTCGACAGTCCCGAGATGGTCCGCGTCTACCTCGGGAGCTTC
TGGGATCGACCGCTCAAACATACCACTCACCGTCGGCTCTTCGAGTCCGA
CCAGGACGCGCTGACGAGGGAGCTCACCGAACTCCCACGGCTATCGGCGG
CCCGGAAGATTAGCCAGATCATCCGAAGAACAAACCGCGTCCGAGCGCAC
GCCTGCGTGTTGAGACTCACCGTCGGCTCTTCGAGTCCGACCAGGACGCG
CTGACGAGGGAGCTCACCGAACTCCCACGGCTATCGGCGGCCCGGAAGAT
TAGCCAGATCATCCGAAGAACAAACCGCGTCCGAGCGCACGCCTGCGTGT
TGAGCTACCTGCGCGAGCAGACGCCTTGGCTGTACGGCATGTCCAGGCGA
CGCGCGGAACTCTTGGAAAACCTAGAACACGTCTTCGAGACGCTACCTGC
GCGAGCAGACGCCTTGGCTGTACGGCATGTCCAGGCGACGCGCGGAACTC
TTGGAAAACCTAGAACACGTCTTCGAGACGGTGCGGGAAGAGTACGGTCT
CCACGAGGCGGATATGCCGGATGCGGCCGCTTTGAGGTTAAACCTGCAGA
GCTTCGAGTTCTCGTCCTTTCCGAGGCTGACGCCATCAACGCTTCGTCGC
CTCCACGACGTGGTGGAGGTTGACATCCACAAGGTGGTGCGGGAAGAGTA
CGGTCTCCACGAGGCGGATATGCCGGATGCGGCCGCTTTGAGGTTAAACC
TGCAGAGCTTCGAGTTCTCGTCCTTTCCGAGGCTGACGCCATCAACGCTT
CGTCGCCTCCACGACGTGGTGGAGGTTGACATCCACAAGGTG
back to top